Wall clock time and date at job start Tue Mar 31 2020 11:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99889 * 2 1 4 4 N 1.46903 * 109.46952 * 125.44908 * 3 2 1 5 5 C 1.46903 * 111.00264 * 304.57298 * 4 3 2 6 6 C 1.50693 * 109.47119 * 285.85691 * 5 4 3 7 7 H 1.08002 * 120.00124 * 355.30018 * 6 5 4 8 8 C 1.37877 * 119.99909 * 175.29576 * 6 5 4 9 9 N 1.31515 * 120.00074 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00033 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47501 * 89.99681 * 10 8 6 12 12 H 1.48498 * 109.47366 * 209.99619 * 10 8 6 13 13 H 1.48497 * 109.47390 * 329.99454 * 10 8 6 14 14 C 1.46908 * 110.99978 * 68.52893 * 4 3 2 15 15 C 1.50698 * 109.46898 * 66.04317 * 14 4 3 16 16 C 1.38319 * 120.83401 * 83.72525 * 15 14 4 17 17 Cl 1.73595 * 120.42168 * 359.97438 * 16 15 14 18 18 N 1.32667 * 119.16563 * 180.02562 * 16 15 14 19 19 C 1.31792 * 120.98293 * 359.97438 * 18 16 15 20 20 N 1.31745 * 121.84774 * 359.97438 * 19 18 16 21 21 C 1.33036 * 120.71970 * 359.71632 * 20 19 18 22 22 N 1.38563 * 120.51992 * 180.28291 * 21 20 19 23 23 C 1.46899 * 111.00264 * 328.56749 * 22 21 20 24 24 C 1.46908 * 110.99849 * 92.51738 * 22 21 20 25 25 H 1.08001 * 119.99958 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00208 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99937 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47221 * 5.45153 * 3 2 1 29 29 H 1.08995 * 109.47289 * 245.44776 * 3 2 1 30 30 H 1.09002 * 109.46424 * 45.85495 * 5 4 3 31 31 H 1.08992 * 109.47250 * 165.85173 * 5 4 3 32 32 H 0.97001 * 119.99960 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46740 * 186.04619 * 14 4 3 34 34 H 1.09000 * 109.46685 * 306.04487 * 14 4 3 35 35 H 1.07993 * 119.07164 * 179.97438 * 19 18 16 36 36 H 1.09000 * 109.47345 * 59.99415 * 23 22 21 37 37 H 1.08996 * 109.47469 * 180.02562 * 23 22 21 38 38 H 1.09007 * 109.46304 * 299.99779 * 23 22 21 39 39 H 1.08999 * 109.47038 * 64.27908 * 24 22 21 40 40 H 1.09000 * 109.47270 * 184.28098 * 24 22 21 41 41 H 1.09004 * 109.46982 * 304.27887 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0039 1.3275 1.1283 5 6 2.3078 1.0848 2.3989 6 6 1.5278 2.3144 2.7872 7 1 1.6071 3.2137 2.1944 8 6 0.7129 2.2912 3.8991 9 7 0.0326 3.3644 4.2382 10 14 0.5762 0.7360 4.9247 11 1 1.6107 0.7529 5.9900 12 1 -0.7715 0.6686 5.5445 13 1 0.7808 -0.4501 4.0549 14 6 4.0888 0.3573 0.9287 15 6 4.9303 0.7797 -0.2480 16 6 5.9435 1.7092 -0.0977 17 17 6.2680 2.4123 1.4560 18 7 6.6635 2.0575 -1.1561 19 6 6.4265 1.5313 -2.3410 20 7 5.4724 0.6423 -2.5285 21 6 4.7117 0.2377 -1.5149 22 7 3.7132 -0.7018 -1.7157 23 6 3.1481 -0.5890 -3.0669 24 6 4.2113 -2.0610 -1.4653 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3591 2.1313 0.0976 29 1 2.6149 1.4063 -0.9347 30 1 1.6252 0.2428 2.2841 31 1 3.0379 0.8574 3.1756 32 1 -0.5404 3.3482 5.0207 33 1 4.7097 0.3173 1.8238 34 1 3.6642 -0.6281 0.7367 35 1 7.0313 1.8374 -3.1816 36 1 3.9342 -0.7513 -3.8043 37 1 2.3666 -1.3374 -3.1976 38 1 2.7238 0.4061 -3.2011 39 1 4.4892 -2.1585 -0.4158 40 1 3.4307 -2.7836 -1.7031 41 1 5.0837 -2.2493 -2.0912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292074438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:25 Heat of formation + Delta-G solvation = 81.383034 kcal Electronic energy + Delta-G solvation = -24597.866734 eV Core-core repulsion = 21153.989046 eV Total energy + Delta-G solvation = -3443.877688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.49029 -39.20945 -38.57020 -37.67323 -34.78965 -34.43331 -33.83902 -32.73635 -29.77963 -28.79522 -27.86350 -26.61470 -25.93853 -23.65623 -23.15529 -22.35695 -20.27298 -19.26592 -18.78647 -18.73434 -17.18113 -16.81725 -16.30608 -16.01265 -15.88251 -15.73850 -15.52304 -15.47737 -15.17252 -14.81538 -14.51817 -13.97854 -13.45530 -13.39442 -13.17584 -13.15898 -12.94865 -12.78663 -12.68009 -12.49275 -12.35430 -12.20212 -12.09789 -11.83263 -11.68694 -11.46091 -11.38758 -10.71244 -10.60139 -10.50620 -10.06105 -9.63143 -8.88503 -8.20225 -6.21265 -0.32925 -0.26237 0.63910 1.38100 1.39355 1.49345 1.59100 2.35427 2.39973 2.47406 3.09640 3.14521 3.26017 3.39239 3.62503 3.83997 4.08616 4.19979 4.27211 4.36713 4.43800 4.52764 4.56511 4.64920 4.73149 4.79181 4.89390 4.96727 4.99417 5.03347 5.09688 5.12791 5.28924 5.48099 5.64214 5.80691 5.85978 5.90290 5.95869 6.16443 6.43095 6.71337 6.84474 6.84771 7.41372 8.97008 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.005708 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.729102 B = 4904.633695 C = 6123.177465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.107 3.893 4 N -0.526 5.526 5 C 0.175 3.825 6 C -0.498 4.498 7 H 0.030 0.970 8 C 0.009 3.991 9 N -0.953 5.953 10 Si 0.938 3.062 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.243 1.243 14 C 0.104 3.896 15 C -0.157 4.157 16 C 0.229 3.771 17 Cl -0.007 7.007 18 N -0.543 5.543 19 C 0.325 3.675 20 N -0.554 5.554 21 C 0.369 3.631 22 N -0.490 5.490 23 C 0.035 3.965 24 C 0.028 3.972 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.125 0.875 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.008 0.992 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.240 0.760 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -13.837 -14.712 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.173 4.173 3 C -0.020 4.020 4 N -0.248 5.248 5 C 0.048 3.952 6 C -0.536 4.536 7 H 0.048 0.952 8 C -0.188 4.188 9 N -0.595 5.595 10 Si 0.762 3.238 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.166 1.166 14 C -0.024 4.024 15 C -0.165 4.165 16 C 0.058 3.942 17 Cl 0.021 6.979 18 N -0.261 5.261 19 C 0.037 3.963 20 N -0.273 5.273 21 C 0.129 3.871 22 N -0.211 5.211 23 C -0.112 4.112 24 C -0.118 4.118 25 H 0.128 0.872 26 H 0.092 0.908 27 H 0.143 0.857 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.323 -12.897 -14.840 22.688 hybrid contribution -0.614 -0.705 1.047 1.404 sum 10.709 -13.602 -13.793 22.135 Atomic orbital electron populations 1.23802 0.96338 1.01275 1.02172 1.23394 0.96044 0.99426 0.98485 1.20960 0.93550 0.94539 0.92993 1.62098 1.11299 1.48810 1.02634 1.19943 0.92768 0.94955 0.87523 1.21163 1.24245 0.98027 1.10181 0.95164 1.25757 0.95005 0.99329 0.98669 1.70065 1.30773 1.30902 1.27722 0.85845 0.77546 0.80978 0.79429 1.19378 1.21313 1.16593 1.20838 0.92410 0.95137 0.94032 1.20953 0.98424 0.99348 0.97762 1.21981 0.91544 0.91128 0.89593 1.98450 1.94660 1.82615 1.22132 1.67932 1.29760 1.28516 0.99880 1.25465 0.90996 0.86744 0.93142 1.68571 1.07206 1.16488 1.34985 1.20084 0.87581 0.91890 0.87521 1.59739 1.26137 1.04596 1.30623 1.22357 0.99717 1.03100 0.85978 1.22599 1.00960 0.85736 1.02474 0.87233 0.90774 0.85693 0.94068 0.91329 0.97420 0.95898 0.92783 0.90208 0.91224 0.74456 0.92799 0.88508 0.92695 0.90724 0.87424 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.36 14.32 67.78 0.97 -5.39 16 2 C -0.15 -4.91 6.49 25.64 0.17 -4.75 16 3 C 0.11 4.01 5.18 85.56 0.44 4.45 16 4 N -0.53 -20.92 4.63 -909.94 -4.21 -25.14 16 5 C 0.17 8.05 3.67 85.55 0.31 8.36 16 6 C -0.50 -28.52 9.22 25.60 0.24 -28.28 16 7 H 0.03 1.98 8.01 -2.91 -0.02 1.95 16 8 C 0.01 0.51 5.47 84.65 0.46 0.97 16 9 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 10 Si 0.94 43.64 27.56 68.60 1.89 45.53 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.24 -10.28 6.41 99.48 0.64 -9.64 16 14 C 0.10 3.28 4.36 85.55 0.37 3.65 16 15 C -0.16 -4.56 4.73 -19.54 -0.09 -4.65 16 16 C 0.23 6.98 7.32 84.59 0.62 7.60 16 17 Cl -0.01 -0.23 27.76 -2.72 -0.08 -0.31 16 18 N -0.54 -15.01 10.43 -191.11 -1.99 -17.00 16 19 C 0.33 7.11 12.28 180.90 2.22 9.33 16 20 N -0.55 -12.81 9.16 -197.66 -1.81 -14.62 16 21 C 0.37 9.15 4.56 133.12 0.61 9.75 16 22 N -0.49 -9.96 1.82 -751.23 -1.37 -11.33 16 23 C 0.04 0.61 9.11 127.69 1.16 1.78 16 24 C 0.03 0.41 9.25 127.69 1.18 1.59 16 25 H 0.11 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.07 2.69 7.84 -2.91 -0.02 2.67 16 27 H 0.13 3.45 6.27 -2.91 -0.02 3.43 16 28 H 0.04 1.85 7.32 -2.38 -0.02 1.83 16 29 H 0.07 2.40 5.68 -2.39 -0.01 2.38 16 30 H 0.01 0.37 5.21 -2.39 -0.01 0.36 16 31 H 0.02 1.04 7.43 -2.39 -0.02 1.03 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.08 2.53 6.99 -2.39 -0.02 2.51 16 34 H 0.07 1.94 4.55 -2.39 -0.01 1.93 16 35 H 0.24 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.05 0.90 7.60 -2.39 -0.02 0.88 16 37 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 38 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.14 7.18 -2.39 -0.02 1.13 16 40 H 0.11 1.11 8.05 -2.39 -0.02 1.09 16 41 H 0.04 0.62 8.12 -2.38 -0.02 0.60 16 Total: -1.00 -69.30 342.80 2.36 -66.94 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.97 Total: 11.34 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 8.67 Total: 4.42 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -9.09 Total: -127.91 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.89 Total: 45.53 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -69.30 2.36 -66.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292074438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.321 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds