Wall clock time and date at job start Tue Mar 31 2020 10:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.47256 * 174.35001 * 3 2 1 6 6 H 1.07994 * 120.00318 * 87.45557 * 5 3 2 7 7 C 1.37880 * 119.99677 * 267.45850 * 5 3 2 8 8 N 1.31517 * 119.99784 * 176.07975 * 7 5 3 9 9 Si 1.86796 * 120.00225 * 356.07996 * 7 5 3 10 10 H 1.48499 * 109.47291 * 275.08749 * 9 7 5 11 11 H 1.48504 * 109.47235 * 35.09054 * 9 7 5 12 12 H 1.48508 * 109.47066 * 155.08947 * 9 7 5 13 13 N 1.46501 * 109.46695 * 294.35060 * 3 2 1 14 14 C 1.34773 * 120.00119 * 85.00225 * 13 3 2 15 15 O 1.21277 * 120.00127 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00070 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47556 * 300.00194 * 16 14 13 18 18 C 1.53009 * 109.46995 * 59.99852 * 16 14 13 19 19 N 1.46500 * 109.47584 * 179.97438 * 16 14 13 20 20 C 1.34950 * 126.03956 * 165.00228 * 19 16 14 21 21 C 1.35316 * 107.74305 * 179.97438 * 20 19 16 22 22 N 1.48020 * 126.03701 * 179.97438 * 21 20 19 23 23 O 1.21805 * 120.00143 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99996 * 179.97438 * 22 21 20 25 25 C 1.39872 * 107.92160 * 359.97438 * 21 20 19 26 26 N 1.30835 * 108.20349 * 359.74416 * 25 21 20 27 27 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 31 31 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 32 32 H 0.96995 * 120.00413 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99540 * 264.99698 * 13 3 2 34 34 H 1.09000 * 109.46888 * 59.99738 * 17 16 14 35 35 H 1.08998 * 109.47544 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.46786 * 299.99842 * 17 16 14 37 37 H 1.08995 * 109.46827 * 60.00087 * 18 16 14 38 38 H 1.08998 * 109.47024 * 180.02562 * 18 16 14 39 39 H 1.08996 * 109.46901 * 300.00105 * 18 16 14 40 40 H 1.07991 * 126.12579 * 359.97438 * 20 19 16 41 41 H 1.07999 * 125.89400 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1399 6 1 4.1648 1.3735 -0.7384 7 6 4.1161 1.5380 1.3893 8 7 5.4228 1.4625 1.5185 9 14 3.0403 1.7714 2.8984 10 1 2.7485 3.2161 3.0797 11 1 1.7674 1.0280 2.7187 12 1 3.7499 1.2556 4.0967 13 7 1.6658 2.0927 -1.2584 14 6 0.4498 2.6591 -1.3887 15 8 -0.3348 2.6302 -0.4644 16 6 0.0651 3.3283 -2.6829 17 6 1.0387 4.4719 -2.9749 18 6 0.1213 2.3075 -3.8213 19 7 -1.2952 3.8609 -2.5719 20 6 -1.8681 4.7551 -3.4045 21 6 -3.1252 4.9859 -2.9600 22 7 -4.1117 5.9023 -3.5748 23 8 -3.8171 6.5324 -4.5747 24 8 -5.2181 6.0264 -3.0807 25 6 -3.3276 4.2055 -1.8170 26 7 -2.2333 3.5263 -1.5868 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8279 1.5284 2.3973 33 1 2.2932 2.1155 -1.9977 34 1 2.0506 4.0753 -3.0577 35 1 0.7608 4.9557 -3.9113 36 1 0.9987 5.1991 -2.1640 37 1 -0.5723 1.4929 -3.6134 38 1 -0.1565 2.7917 -4.7575 39 1 1.1332 1.9110 -3.9041 40 1 -1.4061 5.2058 -4.2703 41 1 -4.2323 4.1672 -1.2285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358062382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:31 Heat of formation + Delta-G solvation = 45.937887 kcal Electronic energy + Delta-G solvation = -26532.549498 eV Core-core repulsion = 22646.425629 eV Total energy + Delta-G solvation = -3886.123869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54474 -41.53750 -39.65631 -36.51114 -36.14330 -35.24473 -32.56728 -31.79290 -31.36104 -30.58873 -27.96609 -27.64611 -26.43375 -24.04372 -23.07381 -22.31921 -21.41849 -20.33213 -19.74559 -19.07139 -18.46525 -17.56585 -17.26246 -16.78067 -16.27085 -15.79818 -15.48688 -15.03652 -14.65602 -14.38377 -13.85456 -13.62957 -13.40922 -12.92636 -12.88718 -12.78886 -12.45786 -12.30775 -12.05053 -11.96888 -11.89227 -11.77012 -11.55355 -11.15646 -11.08276 -10.95482 -10.84712 -10.81382 -10.18136 -10.07767 -9.98676 -9.65267 -9.38140 -9.22365 -8.85504 -8.25271 -6.37526 -4.42435 0.19058 1.11121 1.37499 2.02729 2.23243 2.85990 3.13860 3.24390 3.27500 3.31282 3.94960 4.04632 4.19791 4.22881 4.39457 4.63456 4.71907 4.84501 4.99667 5.02436 5.08797 5.19252 5.26629 5.56546 5.65717 5.71352 5.91515 5.96066 6.09791 6.12239 6.37767 6.48632 6.65734 6.78314 6.84988 6.99735 7.11443 7.16879 7.35568 7.68570 7.90273 8.31594 8.58413 8.67374 9.23522 10.73772 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.003585 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.099789 B = 7808.807633 C = 8029.121860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.084 3.916 8 N -0.885 5.885 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.695 5.695 14 C 0.499 3.501 15 O -0.500 6.500 16 C 0.156 3.844 17 C -0.163 4.163 18 C -0.159 4.159 19 N -0.326 5.326 20 C 0.147 3.853 21 C -0.194 4.194 22 N 0.074 4.926 23 O -0.184 6.184 24 O -0.169 6.169 25 C 0.086 3.914 26 N -0.200 5.200 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.392 0.608 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.200 0.800 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 3.923 -11.855 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.140 3.860 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.121 4.121 8 N -0.521 5.521 9 Si 0.697 3.303 10 H -0.199 1.199 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.345 5.345 14 C 0.280 3.720 15 O -0.374 6.374 16 C 0.070 3.930 17 C -0.221 4.221 18 C -0.217 4.217 19 N -0.105 5.105 20 C -0.008 4.008 21 C -0.292 4.292 22 N 0.588 4.412 23 O -0.394 6.394 24 O -0.383 6.383 25 C -0.104 4.104 26 N -0.018 5.018 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.217 0.783 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.314 2.523 -9.952 13.862 hybrid contribution -0.750 1.028 -0.215 1.290 sum -10.063 3.550 -10.167 14.739 Atomic orbital electron populations 1.21898 0.97266 0.98968 1.02028 1.22102 0.93702 0.99295 1.01393 1.19191 0.95641 0.89049 0.82142 0.93122 1.20958 0.88424 1.52828 0.95023 0.90257 1.24907 0.94867 0.93486 0.98867 1.69864 1.09616 1.48037 1.24579 0.86943 0.81317 0.79524 0.82467 1.19903 1.18240 1.21051 1.46552 1.13479 1.55845 1.18594 1.19656 0.83959 0.80724 0.87682 1.90834 1.49613 1.57632 1.39301 1.21229 0.76802 0.96484 0.98495 1.22329 0.99333 0.96999 1.03451 1.22300 1.05223 0.98356 0.95852 1.48873 1.11962 1.30375 1.19281 1.22153 0.91601 0.91059 0.95951 1.21054 0.92964 1.10024 1.05168 1.42485 1.00649 0.98767 0.99276 1.94523 1.84330 1.45584 1.14918 1.94539 1.07467 1.70785 1.65504 1.24240 0.99028 0.93053 0.94115 1.78562 0.96042 1.19784 1.07412 0.93021 0.93314 0.95048 0.92936 0.91930 0.92073 0.77405 0.88120 0.90474 0.90463 0.90683 0.90638 0.88640 0.78303 0.77746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.53 37.16 0.32 -2.37 16 2 C -0.13 -2.51 5.54 -26.73 -0.15 -2.66 16 3 C 0.24 5.15 1.82 -69.08 -0.13 5.02 16 4 H 0.05 1.21 4.92 -51.93 -0.26 0.96 16 5 C -0.53 -13.16 9.05 -34.44 -0.31 -13.48 16 6 H 0.08 2.05 8.06 -52.49 -0.42 1.62 16 7 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 8 N -0.89 -24.76 13.96 55.43 0.77 -23.98 16 9 Si 0.87 20.52 26.69 -169.99 -4.54 15.98 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.26 -5.98 6.88 56.52 0.39 -5.59 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -11.70 4.81 -54.93 -0.26 -11.97 16 14 C 0.50 8.07 5.13 -10.99 -0.06 8.01 16 15 O -0.50 -10.00 11.49 5.56 0.06 -9.93 16 16 C 0.16 1.76 1.08 -132.97 -0.14 1.61 16 17 C -0.16 -1.40 8.19 37.16 0.30 -1.10 16 18 C -0.16 -1.34 8.62 37.16 0.32 -1.02 16 19 N -0.33 -4.01 3.41 -49.73 -0.17 -4.18 16 20 C 0.15 1.50 10.28 -17.22 -0.18 1.33 16 21 C -0.19 -2.37 7.11 -80.38 -0.57 -2.94 16 22 N 0.07 1.00 4.45 33.75 0.15 1.15 16 23 O -0.18 -2.51 19.02 -29.46 -0.56 -3.07 16 24 O -0.17 -2.42 19.05 -29.46 -0.56 -2.98 16 25 C 0.09 1.09 11.75 -17.37 -0.20 0.89 16 26 N -0.20 -3.01 9.92 30.62 0.30 -2.71 16 27 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 28 H 0.05 0.89 5.63 -51.93 -0.29 0.60 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.39 5.53 7.43 -40.82 -0.30 5.23 16 34 H 0.10 0.77 7.56 -51.93 -0.39 0.38 16 35 H 0.08 0.42 7.37 -51.93 -0.38 0.04 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.67 7.56 -51.93 -0.39 0.28 16 40 H 0.20 1.27 7.55 -52.49 -0.40 0.88 16 41 H 0.21 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -31.86 345.42 -5.83 -37.69 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.34 Total: 3.39 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.89 Total: -4.59 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.79 Total: -41.70 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.06 Total: -15.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.54 Total: 15.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.86 -5.83 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358062382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.629 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds