Wall clock time and date at job start Tue Mar 31 2020 10:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50697 * 109.47256 * 174.35001 * 3 2 1 6 6 H 1.07994 * 120.00318 * 87.45557 * 5 3 2 7 7 C 1.37880 * 119.99677 * 267.45850 * 5 3 2 8 8 N 1.31517 * 119.99784 * 176.07975 * 7 5 3 9 9 Si 1.86796 * 120.00225 * 356.07996 * 7 5 3 10 10 H 1.48499 * 109.47291 * 275.08749 * 9 7 5 11 11 H 1.48504 * 109.47235 * 35.09054 * 9 7 5 12 12 H 1.48508 * 109.47066 * 155.08947 * 9 7 5 13 13 N 1.46501 * 109.46695 * 294.35060 * 3 2 1 14 14 C 1.34773 * 120.00119 * 85.00225 * 13 3 2 15 15 O 1.21277 * 120.00127 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00070 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47556 * 300.00194 * 16 14 13 18 18 C 1.53009 * 109.46995 * 59.99852 * 16 14 13 19 19 N 1.46500 * 109.47584 * 179.97438 * 16 14 13 20 20 C 1.34950 * 126.03956 * 165.00228 * 19 16 14 21 21 C 1.35316 * 107.74305 * 179.97438 * 20 19 16 22 22 N 1.48020 * 126.03701 * 179.97438 * 21 20 19 23 23 O 1.21805 * 120.00143 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99996 * 179.97438 * 22 21 20 25 25 C 1.39872 * 107.92160 * 359.97438 * 21 20 19 26 26 N 1.30835 * 108.20349 * 359.74416 * 25 21 20 27 27 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 31 31 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 32 32 H 0.96995 * 120.00413 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99540 * 264.99698 * 13 3 2 34 34 H 1.09000 * 109.46888 * 59.99738 * 17 16 14 35 35 H 1.08998 * 109.47544 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.46786 * 299.99842 * 17 16 14 37 37 H 1.08995 * 109.46827 * 60.00087 * 18 16 14 38 38 H 1.08998 * 109.47024 * 180.02562 * 18 16 14 39 39 H 1.08996 * 109.46901 * 300.00105 * 18 16 14 40 40 H 1.07991 * 126.12579 * 359.97438 * 20 19 16 41 41 H 1.07999 * 125.89400 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1399 6 1 4.1648 1.3735 -0.7384 7 6 4.1161 1.5380 1.3893 8 7 5.4228 1.4625 1.5185 9 14 3.0403 1.7714 2.8984 10 1 2.7485 3.2161 3.0797 11 1 1.7674 1.0280 2.7187 12 1 3.7499 1.2556 4.0967 13 7 1.6658 2.0927 -1.2584 14 6 0.4498 2.6591 -1.3887 15 8 -0.3348 2.6302 -0.4644 16 6 0.0651 3.3283 -2.6829 17 6 1.0387 4.4719 -2.9749 18 6 0.1213 2.3075 -3.8213 19 7 -1.2952 3.8609 -2.5719 20 6 -1.8681 4.7551 -3.4045 21 6 -3.1252 4.9859 -2.9600 22 7 -4.1117 5.9023 -3.5748 23 8 -3.8171 6.5324 -4.5747 24 8 -5.2181 6.0264 -3.0807 25 6 -3.3276 4.2055 -1.8170 26 7 -2.2333 3.5263 -1.5868 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8279 1.5284 2.3973 33 1 2.2932 2.1155 -1.9977 34 1 2.0506 4.0753 -3.0577 35 1 0.7608 4.9557 -3.9113 36 1 0.9987 5.1991 -2.1640 37 1 -0.5723 1.4929 -3.6134 38 1 -0.1565 2.7917 -4.7575 39 1 1.1332 1.9110 -3.9041 40 1 -1.4061 5.2058 -4.2703 41 1 -4.2323 4.1672 -1.2285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358062382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:30 Heat of formation + Delta-G solvation = 24.723344 kcal Electronic energy + Delta-G solvation = -26533.469430 eV Core-core repulsion = 22646.425629 eV Total energy + Delta-G solvation = -3887.043801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49984 -42.53224 -40.93024 -37.54339 -37.35882 -36.61620 -34.42562 -33.23207 -32.30924 -31.62073 -29.40703 -28.59470 -27.37383 -25.23048 -24.56458 -23.49576 -22.43661 -21.61761 -21.08143 -20.25811 -19.49113 -18.88168 -18.56214 -17.90374 -17.51060 -16.92524 -16.78608 -16.31559 -15.97384 -15.61541 -15.12973 -14.81336 -14.49976 -14.43585 -13.84979 -13.78537 -13.62137 -13.54055 -13.27252 -13.23393 -12.97934 -12.84055 -12.68253 -12.60347 -12.57487 -12.36920 -12.21357 -11.97329 -11.89481 -11.70276 -11.23335 -11.09495 -10.87355 -10.58552 -10.49916 -9.75988 -8.41414 -6.46129 -0.78510 0.18040 0.46579 1.11970 1.24600 1.28399 1.31486 1.40471 1.63724 2.07091 2.23468 2.95973 3.09556 3.28808 3.41784 3.57552 3.61946 3.86832 3.98795 4.28513 4.37927 4.41856 4.48207 4.49974 4.56993 4.57994 4.75726 4.80443 4.97416 5.04573 5.08245 5.20652 5.22028 5.26626 5.38668 5.41903 5.52852 5.71038 6.07038 6.10519 6.59690 6.63737 6.80926 7.19289 7.39039 8.73123 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.003585 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.099789 B = 7808.807633 C = 8029.121860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.248 3.752 4 H 0.025 0.975 5 C -0.522 4.522 6 H 0.065 0.935 7 C 0.039 3.961 8 N -0.927 5.927 9 Si 0.917 3.083 10 H -0.279 1.279 11 H -0.256 1.256 12 H -0.281 1.281 13 N -0.692 5.692 14 C 0.494 3.506 15 O -0.540 6.540 16 C 0.164 3.836 17 C -0.163 4.163 18 C -0.157 4.157 19 N -0.331 5.331 20 C 0.174 3.826 21 C -0.209 4.209 22 N 0.077 4.923 23 O -0.174 6.174 24 O -0.204 6.204 25 C 0.089 3.911 26 N -0.251 5.251 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.270 0.730 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.246 0.754 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.491 4.369 -14.434 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 C 0.144 3.856 4 H 0.043 0.957 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.566 5.566 9 Si 0.742 3.258 10 H -0.205 1.205 11 H -0.181 1.181 12 H -0.207 1.207 13 N -0.344 5.344 14 C 0.277 3.723 15 O -0.417 6.417 16 C 0.078 3.922 17 C -0.221 4.221 18 C -0.215 4.215 19 N -0.110 5.110 20 C 0.019 3.981 21 C -0.308 4.308 22 N 0.588 4.412 23 O -0.388 6.388 24 O -0.410 6.410 25 C -0.102 4.102 26 N -0.069 5.069 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.244 0.756 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.262 0.738 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.717 2.964 -12.522 16.125 hybrid contribution -0.622 0.902 0.485 1.199 sum -10.339 3.866 -12.037 16.332 Atomic orbital electron populations 1.21739 0.96056 1.00010 1.00996 1.22009 0.94636 0.98152 1.01404 1.18828 0.93269 0.90000 0.83458 0.95744 1.21191 0.90096 1.50609 0.94112 0.91722 1.25473 0.95496 0.94090 1.01165 1.69951 1.10899 1.50651 1.25054 0.86218 0.80151 0.78946 0.80435 1.20495 1.18054 1.20666 1.46158 1.14613 1.56045 1.17537 1.20441 0.82769 0.79812 0.89240 1.90827 1.50600 1.58821 1.41415 1.21290 0.76910 0.97904 0.96062 1.22453 0.99167 0.95651 1.04840 1.22389 1.05895 0.97243 0.95922 1.48970 1.11975 1.30810 1.19224 1.22787 0.90514 0.88958 0.95853 1.21139 0.93580 1.10522 1.05579 1.42601 1.00694 0.98744 0.99143 1.94496 1.84167 1.45360 1.14800 1.94549 1.08268 1.71972 1.66168 1.24510 0.98983 0.92395 0.94298 1.78532 0.97266 1.21632 1.09470 0.95295 0.93098 0.92862 0.91399 0.93432 0.92102 0.75638 0.87007 0.86096 0.92459 0.92437 0.86978 0.87054 0.73789 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.53 71.98 0.61 -4.15 16 2 C -0.12 -4.80 5.54 30.59 0.17 -4.63 16 3 C 0.25 10.50 1.82 44.24 0.08 10.58 16 4 H 0.02 1.18 4.92 -2.39 -0.01 1.17 16 5 C -0.52 -25.74 9.05 25.60 0.23 -25.51 16 6 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 7 C 0.04 2.05 5.47 84.65 0.46 2.52 16 8 N -0.93 -52.66 13.96 21.45 0.30 -52.36 16 9 Si 0.92 43.04 26.69 68.60 1.83 44.87 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.26 -11.82 6.88 99.48 0.68 -11.14 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.69 -22.42 4.81 -446.11 -2.15 -24.56 16 14 C 0.49 15.31 5.13 87.66 0.45 15.75 16 15 O -0.54 -21.56 11.49 -3.02 -0.03 -21.60 16 16 C 0.16 3.18 1.08 2.86 0.00 3.19 16 17 C -0.16 -2.14 8.19 71.98 0.59 -1.55 16 18 C -0.16 -1.98 8.62 71.99 0.62 -1.36 16 19 N -0.33 -7.28 3.41 -311.24 -1.06 -8.34 16 20 C 0.17 2.89 10.28 83.54 0.86 3.75 16 21 C -0.21 -4.67 7.11 36.10 0.26 -4.41 16 22 N 0.08 1.95 4.45 -47.13 -0.21 1.74 16 23 O -0.17 -4.31 19.02 18.88 0.36 -3.95 16 24 O -0.20 -5.74 19.05 18.89 0.36 -5.38 16 25 C 0.09 2.18 11.75 85.24 1.00 3.18 16 26 N -0.25 -7.35 9.92 -57.02 -0.57 -7.92 16 27 H 0.03 1.16 7.88 -2.39 -0.02 1.14 16 28 H 0.05 1.82 5.63 -2.39 -0.01 1.80 16 29 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 1.98 7.90 -2.38 -0.02 1.96 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.41 10.64 7.43 -92.71 -0.69 9.95 16 34 H 0.11 1.25 7.56 -2.39 -0.02 1.23 16 35 H 0.12 0.56 7.37 -2.39 -0.02 0.54 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.11 1.08 7.56 -2.39 -0.02 1.06 16 40 H 0.25 1.59 7.55 -2.92 -0.02 1.57 16 41 H 0.22 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -72.00 345.42 4.52 -67.48 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.36 Total: 12.68 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.34 Total: -2.65 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.69 Total: -91.44 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: 0.68 Total: -30.93 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.83 Total: 44.87 kcal Total: -72.00 4.52 -67.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358062382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.199 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds