Wall clock time and date at job start Tue Mar 31 2020 10:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46982 * 240.00261 * 2 1 3 5 5 C 1.50695 * 109.47088 * 59.99767 * 4 2 1 6 6 H 1.08003 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99882 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47245 * 89.99518 * 9 7 5 11 11 H 1.48501 * 109.47507 * 209.99538 * 9 7 5 12 12 H 1.48499 * 109.47170 * 329.99678 * 9 7 5 13 13 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 14 14 N 1.46497 * 109.46983 * 300.00028 * 13 2 1 15 15 C 1.34780 * 119.99566 * 180.02562 * 14 13 2 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.34957 * 126.03564 * 124.99847 * 18 17 15 20 20 C 1.35316 * 107.74619 * 179.97438 * 19 18 17 21 21 N 1.48018 * 126.03852 * 179.97438 * 20 19 18 22 22 O 1.21793 * 120.00192 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99671 * 180.02562 * 21 20 19 24 24 C 1.39878 * 107.91913 * 0.02562 * 20 19 18 25 25 N 1.30838 * 108.20024 * 359.73750 * 24 20 19 26 26 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 28 28 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 31 31 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 32 32 H 1.08998 * 109.47061 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46668 * 300.00213 * 4 2 1 34 34 H 0.96996 * 119.99885 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46832 * 179.97438 * 13 2 1 36 36 H 1.09002 * 109.47153 * 60.00035 * 13 2 1 37 37 H 0.96995 * 120.00423 * 359.97438 * 14 13 2 38 38 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 39 39 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 40 40 H 1.07999 * 126.12685 * 359.97438 * 19 18 17 41 41 H 1.07999 * 125.89258 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2481 0.3988 -5.2572 10 1 2.2270 1.4398 -5.6614 11 1 1.0824 -0.5802 -6.3614 12 1 -0.0595 1.0373 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4453 15 6 1.8777 -0.4908 3.6695 16 8 2.5750 -1.4769 3.7808 17 6 1.3749 0.2193 4.8999 18 7 1.8634 -0.4713 6.0961 19 6 2.5625 0.0880 7.1059 20 6 2.8214 -0.8807 8.0145 21 7 3.5662 -0.7092 9.2820 22 8 4.0089 0.3842 9.5851 23 8 3.7364 -1.6616 10.0220 24 6 2.2618 -2.0730 7.5436 25 7 1.6827 -1.8276 6.3962 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7216 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 2.8607 -1.8828 -4.7337 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 1.7375 1.2472 4.8999 39 1 0.2849 0.2185 4.9000 40 1 2.8618 1.1233 7.1762 41 1 2.2979 -3.0300 8.0429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359758685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:54 Heat of formation + Delta-G solvation = 30.789436 kcal Electronic energy + Delta-G solvation = -24834.433037 eV Core-core repulsion = 20947.652281 eV Total energy + Delta-G solvation = -3886.780755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.70421 -41.64109 -39.87179 -37.36482 -36.66583 -34.23385 -33.88548 -32.24265 -31.62823 -29.23666 -27.23166 -26.68879 -26.48926 -25.62090 -23.22082 -22.21448 -21.93715 -20.72816 -19.49903 -18.67786 -18.50031 -17.78189 -17.44501 -17.08094 -16.46261 -15.98790 -15.70046 -15.23779 -14.84053 -14.55610 -14.13184 -13.89177 -13.77856 -13.25343 -13.08450 -12.93631 -12.29786 -12.17031 -12.04369 -11.71833 -11.33325 -11.30329 -11.22783 -11.13637 -10.96345 -10.77557 -10.71402 -10.57438 -10.38275 -10.16510 -10.04210 -9.84475 -9.32573 -9.08012 -9.05768 -8.45717 -6.09544 -4.11685 -0.00836 0.85843 1.09148 1.77340 1.98279 2.27762 2.87156 3.23712 3.31395 3.32288 3.65527 3.83582 4.07968 4.30312 4.36243 4.36927 4.52739 4.63900 5.25622 5.28169 5.41123 5.43012 5.55318 5.73477 5.96271 6.01230 6.06521 6.18728 6.18971 6.25354 6.46463 6.53418 6.64019 6.88566 6.91652 6.95773 7.30001 7.50898 7.51723 7.62416 7.87898 7.95855 8.28827 8.92914 9.52083 11.01780 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.042285 B = 0.002129 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.020719 B =13147.664912 C =13275.286299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.514 4.514 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.129 3.871 14 N -0.714 5.714 15 C 0.493 3.507 16 O -0.514 6.514 17 C 0.106 3.894 18 N -0.333 5.333 19 C 0.155 3.845 20 C -0.192 4.192 21 N 0.072 4.928 22 O -0.178 6.178 23 O -0.164 6.164 24 C 0.107 3.893 25 N -0.234 5.234 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.206 0.794 41 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 6.777 20.326 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 N -0.366 5.366 15 C 0.275 3.725 16 O -0.389 6.389 17 C -0.018 4.018 18 N -0.111 5.111 19 C 0.001 3.999 20 C -0.290 4.290 21 N 0.587 4.413 22 O -0.389 6.389 23 O -0.379 6.379 24 C -0.083 4.083 25 N -0.053 5.053 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.223 0.777 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.849 5.440 18.521 19.903 hybrid contribution 0.131 1.184 -0.100 1.195 sum -4.717 6.624 18.421 20.137 Atomic orbital electron populations 1.21777 0.95137 1.01296 1.00305 1.20924 0.95555 0.95877 0.94904 1.21775 1.00618 0.95795 1.00313 1.19095 0.96389 0.95272 0.89412 1.21144 1.31434 1.12158 0.90452 0.92237 1.25025 0.95273 0.95045 0.99169 1.69959 1.36773 1.22913 1.23585 0.86631 0.79159 0.79418 0.82991 1.20734 1.21289 1.19939 1.21723 0.99074 0.96168 0.82347 1.46113 1.53049 1.32027 1.05438 1.20177 0.82095 0.85617 0.84575 1.90831 1.36816 1.25121 1.86132 1.21911 1.02677 0.96379 0.80862 1.48210 1.39798 1.07552 1.15565 1.22328 0.90992 1.00116 0.86464 1.21025 1.17476 0.97527 0.92990 1.42443 0.98065 1.00222 1.00522 1.94541 1.52159 1.13233 1.78931 1.94556 1.62919 1.32659 1.47739 1.24051 0.93767 0.98588 0.91912 1.77968 1.21994 0.91388 1.13904 0.95325 0.91234 0.93258 0.93291 0.91234 0.95327 0.96331 0.96297 0.92937 0.91540 0.91445 0.76379 0.84556 0.85297 0.77714 0.77326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.05 37.16 0.30 -1.68 16 2 C -0.07 -1.22 0.54 -154.51 -0.08 -1.30 16 3 C -0.13 -1.95 8.05 37.16 0.30 -1.65 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -12.98 7.65 -34.44 -0.26 -13.24 16 6 H 0.06 1.44 5.68 -52.48 -0.30 1.14 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 C 0.13 1.98 4.56 -4.04 -0.02 1.96 16 14 N -0.71 -7.81 4.96 -60.30 -0.30 -8.11 16 15 C 0.49 5.55 7.86 -10.98 -0.09 5.46 16 16 O -0.51 -8.50 15.72 5.56 0.09 -8.42 16 17 C 0.11 0.63 6.99 -5.19 -0.04 0.60 16 18 N -0.33 -2.91 3.40 -62.54 -0.21 -3.12 16 19 C 0.15 1.16 11.13 -17.22 -0.19 0.96 16 20 C -0.19 -1.90 7.11 -80.38 -0.57 -2.47 16 21 N 0.07 0.84 4.45 33.75 0.15 0.99 16 22 O -0.18 -2.15 19.02 -29.46 -0.56 -2.71 16 23 O -0.16 -2.07 19.05 -29.46 -0.56 -2.63 16 24 C 0.11 1.06 11.75 -17.36 -0.20 0.86 16 25 N -0.23 -2.69 11.66 30.63 0.36 -2.33 16 26 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 27 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.18 6.62 -51.93 -0.34 0.83 16 31 H 0.03 0.32 6.86 -51.93 -0.36 -0.03 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.40 3.20 6.16 -40.82 -0.25 2.95 16 38 H 0.14 0.21 8.07 -51.93 -0.42 -0.20 16 39 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -34.53 353.87 -6.37 -40.90 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.31 Total: -2.09 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.07 Total: -8.38 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.73 Total: -37.47 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.03 Total: -13.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.53 -6.37 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359758685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds