Wall clock time and date at job start Tue Mar 31 2020 10:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46982 * 240.00261 * 2 1 3 5 5 C 1.50695 * 109.47088 * 59.99767 * 4 2 1 6 6 H 1.08003 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99882 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47245 * 89.99518 * 9 7 5 11 11 H 1.48501 * 109.47507 * 209.99538 * 9 7 5 12 12 H 1.48499 * 109.47170 * 329.99678 * 9 7 5 13 13 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 14 14 N 1.46497 * 109.46983 * 300.00028 * 13 2 1 15 15 C 1.34780 * 119.99566 * 180.02562 * 14 13 2 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.34957 * 126.03564 * 124.99847 * 18 17 15 20 20 C 1.35316 * 107.74619 * 179.97438 * 19 18 17 21 21 N 1.48018 * 126.03852 * 179.97438 * 20 19 18 22 22 O 1.21793 * 120.00192 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99671 * 180.02562 * 21 20 19 24 24 C 1.39878 * 107.91913 * 0.02562 * 20 19 18 25 25 N 1.30838 * 108.20024 * 359.73750 * 24 20 19 26 26 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 28 28 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 31 31 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 32 32 H 1.08998 * 109.47061 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46668 * 300.00213 * 4 2 1 34 34 H 0.96996 * 119.99885 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46832 * 179.97438 * 13 2 1 36 36 H 1.09002 * 109.47153 * 60.00035 * 13 2 1 37 37 H 0.96995 * 120.00423 * 359.97438 * 14 13 2 38 38 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 39 39 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 40 40 H 1.07999 * 126.12685 * 359.97438 * 19 18 17 41 41 H 1.07999 * 125.89258 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2481 0.3988 -5.2572 10 1 2.2270 1.4398 -5.6614 11 1 1.0824 -0.5802 -6.3614 12 1 -0.0595 1.0373 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4453 15 6 1.8777 -0.4908 3.6695 16 8 2.5750 -1.4769 3.7808 17 6 1.3749 0.2193 4.8999 18 7 1.8634 -0.4713 6.0961 19 6 2.5625 0.0880 7.1059 20 6 2.8214 -0.8807 8.0145 21 7 3.5662 -0.7092 9.2820 22 8 4.0089 0.3842 9.5851 23 8 3.7364 -1.6616 10.0220 24 6 2.2618 -2.0730 7.5436 25 7 1.6827 -1.8276 6.3962 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7216 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 2.8607 -1.8828 -4.7337 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 1.7375 1.2472 4.8999 39 1 0.2849 0.2185 4.9000 40 1 2.8618 1.1233 7.1762 41 1 2.2979 -3.0300 8.0429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359758685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:53 Heat of formation + Delta-G solvation = 6.830565 kcal Electronic energy + Delta-G solvation = -24835.471971 eV Core-core repulsion = 20947.652281 eV Total energy + Delta-G solvation = -3887.819690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.43887 -42.41498 -40.87079 -38.70346 -37.53589 -35.32948 -34.89051 -33.95492 -32.33483 -30.07151 -28.99147 -27.94809 -27.57005 -26.53854 -24.88850 -23.09476 -22.64996 -21.63635 -20.36496 -19.72968 -19.48215 -18.63220 -18.39088 -18.30097 -17.77569 -16.86432 -16.71025 -16.38569 -16.13158 -15.59587 -15.27737 -14.97890 -14.62282 -14.46508 -14.29817 -14.01311 -13.94189 -13.46527 -12.88740 -12.81131 -12.73569 -12.59718 -12.56880 -12.33344 -12.24035 -12.21910 -12.03665 -11.99492 -11.54349 -11.54114 -11.09411 -10.91346 -10.84411 -10.53242 -10.52159 -10.16362 -8.15859 -6.23800 -0.80617 0.17212 0.40835 1.14163 1.24815 1.41793 1.42253 1.45562 1.52295 2.03806 2.43117 3.05057 3.19002 3.35010 3.47105 3.67351 3.94838 3.98739 4.05355 4.07675 4.13688 4.21795 4.67055 4.70260 4.72769 4.76785 4.96927 5.08649 5.13819 5.17339 5.34619 5.38530 5.44269 5.51248 5.54275 5.56056 5.80096 5.88983 5.96321 6.27754 6.46014 6.60916 6.92317 7.14297 7.44481 8.96580 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.042285 B = 0.002129 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.020719 B =13147.664912 C =13275.286299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.063 4.063 3 C -0.123 4.123 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.257 1.257 13 C 0.145 3.855 14 N -0.699 5.699 15 C 0.490 3.510 16 O -0.575 6.575 17 C 0.110 3.890 18 N -0.335 5.335 19 C 0.182 3.818 20 C -0.216 4.216 21 N 0.076 4.924 22 O -0.176 6.176 23 O -0.205 6.205 24 C 0.105 3.895 25 N -0.277 5.277 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.080 0.920 32 H -0.016 1.016 33 H -0.018 1.018 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.420 0.580 38 H 0.196 0.804 39 H 0.165 0.835 40 H 0.253 0.747 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 10.580 21.312 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.205 4.205 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.181 1.181 13 C 0.020 3.980 14 N -0.353 5.353 15 C 0.276 3.724 16 O -0.453 6.453 17 C -0.012 4.012 18 N -0.113 5.113 19 C 0.028 3.972 20 C -0.314 4.314 21 N 0.586 4.414 22 O -0.390 6.390 23 O -0.410 6.410 24 C -0.085 4.085 25 N -0.095 5.095 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.213 0.787 39 H 0.182 0.818 40 H 0.269 0.731 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.818 9.241 19.552 22.675 hybrid contribution 0.736 0.020 -0.433 0.855 sum -6.082 9.261 19.118 22.097 Atomic orbital electron populations 1.21720 0.93382 1.00904 1.02040 1.20697 0.96803 0.96455 0.92427 1.21716 0.99866 0.94298 1.02120 1.19001 0.94193 0.94167 0.92723 1.21600 1.30311 1.12050 0.90957 0.90656 1.25981 0.95757 0.95866 1.02870 1.70126 1.38896 1.25035 1.24065 0.85539 0.79253 0.78062 0.78746 1.20172 1.21871 1.18125 1.21160 0.97683 0.95242 0.83886 1.45788 1.53078 1.32245 1.04190 1.21129 0.80650 0.84852 0.85788 1.90827 1.39498 1.27963 1.87034 1.22329 1.04650 0.97502 0.76704 1.48451 1.39650 1.06805 1.16404 1.23029 0.88211 1.01308 0.84689 1.21195 1.18782 0.98586 0.92858 1.42639 0.97879 0.99879 1.00972 1.94507 1.52051 1.13217 1.79216 1.94558 1.64574 1.32921 1.48951 1.24320 0.93172 0.99410 0.91624 1.77922 1.23413 0.93619 1.14555 0.90271 0.92703 0.94799 0.94592 0.92726 0.90120 0.99804 0.99930 0.93248 0.93730 0.94042 0.74009 0.78689 0.81805 0.73146 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 8.05 71.98 0.58 -2.96 16 2 C -0.06 -2.10 0.54 -52.18 -0.03 -2.12 16 3 C -0.12 -3.44 8.05 71.98 0.58 -2.86 16 4 C 0.04 1.78 4.04 29.85 0.12 1.90 16 5 C -0.51 -26.16 7.65 25.60 0.20 -25.97 16 6 H 0.08 3.55 5.68 -2.91 -0.02 3.54 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -56.20 13.29 21.45 0.28 -55.91 16 9 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 13 C 0.14 4.42 4.56 86.38 0.39 4.82 16 14 N -0.70 -13.01 4.96 -463.06 -2.30 -15.31 16 15 C 0.49 9.58 7.86 87.66 0.69 10.27 16 16 O -0.57 -18.71 15.72 -3.03 -0.05 -18.75 16 17 C 0.11 0.71 6.99 85.63 0.60 1.31 16 18 N -0.34 -4.62 3.40 -351.79 -1.19 -5.82 16 19 C 0.18 1.99 11.13 83.54 0.93 2.92 16 20 C -0.22 -3.90 7.11 36.10 0.26 -3.64 16 21 N 0.08 1.71 4.45 -47.12 -0.21 1.50 16 22 O -0.18 -3.98 19.02 18.90 0.36 -3.62 16 23 O -0.20 -5.26 19.05 18.88 0.36 -4.90 16 24 C 0.11 2.02 11.75 85.24 1.00 3.02 16 25 N -0.28 -5.98 11.66 -57.02 -0.66 -6.65 16 26 H 0.08 1.46 6.86 -2.38 -0.02 1.45 16 27 H 0.05 1.75 6.62 -2.39 -0.02 1.73 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.71 6.62 -2.39 -0.02 1.69 16 31 H 0.08 1.41 6.86 -2.39 -0.02 1.40 16 32 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.42 4.30 6.16 -92.71 -0.57 3.73 16 38 H 0.20 -0.99 8.07 -2.39 -0.02 -1.00 16 39 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.25 0.16 8.06 -2.91 -0.02 0.14 16 41 H 0.22 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -83.55 353.87 4.89 -78.66 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 0.50 Total: -0.18 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 5.78 Total: -13.30 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.08 Total: -82.19 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: 0.67 Total: -27.27 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -83.55 4.89 -78.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359758685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.492 kcal (2) G-P(sol) polarization free energy of solvation -83.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds