Wall clock time and date at job start Tue Mar 31 2020 09:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 C 1.50703 * 119.75127 * 180.27643 * 12 11 10 14 14 O 1.42900 * 109.47255 * 90.00172 * 13 12 11 15 15 C 1.35977 * 117.00006 * 180.02562 * 14 13 12 16 16 C 1.38719 * 120.07193 * 359.72313 * 15 14 13 17 17 C 1.37939 * 119.90152 * 179.84619 * 16 15 14 18 18 C 1.39128 * 120.29755 * 0.51726 * 17 16 15 19 19 C 1.38353 * 119.77655 * 359.61239 * 18 17 16 20 20 C 1.38502 * 119.88689 * 0.17138 * 19 18 17 21 21 C 1.50780 * 121.40769 * 180.32486 * 19 18 17 22 22 C 1.53073 * 109.69194 * 342.17774 * 21 19 18 23 23 C 1.53401 * 108.29447 * 48.22282 * 22 21 19 24 24 O 1.35945 * 118.44039 * 179.46678 * 18 17 16 25 25 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 26 26 C 1.37612 * 120.24660 * 359.97438 * 25 12 11 27 27 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 29 29 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 30 30 H 1.09000 * 109.47397 * 210.00368 * 13 12 11 31 31 H 1.09000 * 109.46654 * 330.00119 * 13 12 11 32 32 H 1.08004 * 120.04821 * 0.07833 * 16 15 14 33 33 H 1.08001 * 119.85268 * 180.26617 * 17 16 15 34 34 H 1.07996 * 119.86326 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.43431 * 102.24383 * 21 19 18 36 36 H 1.09000 * 109.43923 * 222.15553 * 21 19 18 37 37 H 1.08998 * 109.69789 * 167.92119 * 22 21 19 38 38 H 1.09003 * 109.69466 * 288.51897 * 22 21 19 39 39 H 1.08997 * 109.69027 * 54.98671 * 23 22 21 40 40 H 1.09004 * 109.68138 * 175.51469 * 23 22 21 41 41 H 1.08003 * 119.87153 * 179.97438 * 25 12 11 42 42 H 1.08001 * 120.12580 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 6 -0.6331 -6.0230 1.5162 14 8 -1.6564 -6.3239 0.5653 15 6 -2.3885 -7.4492 0.7815 16 6 -2.1233 -8.2501 1.8827 17 6 -2.8702 -9.3891 2.1004 18 6 -3.8820 -9.7450 1.2143 19 6 -4.1443 -8.9474 0.1147 20 6 -3.3968 -7.8015 -0.1007 21 6 -5.2367 -9.2943 -0.8650 22 6 -5.6245 -10.7664 -0.7051 23 6 -5.8364 -11.0492 0.7876 24 8 -4.5872 -10.8812 1.4593 25 6 1.1746 -4.8057 0.2845 26 6 1.8205 -3.6493 -0.0886 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1469 -1.4129 1.5758 29 1 -1.2682 -3.4991 2.2269 30 1 0.0879 -6.8400 1.5449 31 1 -1.0793 -5.8974 2.5027 32 1 -1.3357 -7.9800 2.5707 33 1 -2.6659 -10.0097 2.9604 34 1 -3.6016 -7.1794 -0.9594 35 1 -6.1075 -8.6671 -0.6742 36 1 -4.8811 -9.1219 -1.8808 37 1 -6.5468 -10.9648 -1.2511 38 1 -4.8256 -11.4006 -1.0896 39 1 -6.5683 -10.3509 1.1935 40 1 -6.1909 -12.0714 0.9210 41 1 1.5323 -5.7606 -0.0713 42 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399017029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:12 Heat of formation + Delta-G solvation = -45.937498 kcal Electronic energy + Delta-G solvation = -23753.330096 eV Core-core repulsion = 20241.778723 eV Total energy + Delta-G solvation = -3511.551373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73698 -39.10867 -37.55137 -36.16917 -34.38743 -33.84845 -30.97677 -30.55230 -29.42833 -29.24145 -27.01136 -25.74964 -24.22572 -23.10025 -22.52161 -21.07350 -20.30814 -19.73466 -17.78118 -17.49711 -17.36579 -16.69186 -15.59544 -15.47448 -15.16280 -14.95638 -14.54925 -14.40163 -14.00913 -13.72189 -13.47108 -13.31045 -13.07853 -13.06338 -12.76376 -12.53240 -12.02429 -11.80646 -11.68859 -11.48120 -11.22762 -11.20027 -11.04708 -10.93934 -10.74393 -10.52220 -10.32953 -10.04928 -9.68900 -9.46043 -9.20402 -8.81959 -7.56304 -7.53589 -7.43035 -6.84723 -4.44567 1.27339 1.56713 2.56755 3.01579 3.02296 3.03850 3.09926 3.24163 3.76736 3.84271 3.88604 4.45225 4.48322 4.57290 4.65700 4.79515 4.97915 5.06859 5.18081 5.31475 5.33176 5.44698 5.58809 5.62853 5.63788 5.67117 5.78275 5.82319 5.94402 6.00715 6.12695 6.27513 6.32860 6.40621 6.48786 6.67173 6.88725 6.99327 7.20194 7.28455 7.39254 7.53678 7.73497 7.88847 7.97543 8.03060 8.21366 8.55828 8.80585 8.88848 10.09218 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.002266 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.328136 B =12351.880031 C =12686.309104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.171 4.171 11 C -0.076 4.076 12 C -0.233 4.233 13 C 0.127 3.873 14 O -0.308 6.308 15 C 0.116 3.884 16 C -0.181 4.181 17 C -0.106 4.106 18 C 0.079 3.921 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.078 4.078 22 C -0.159 4.159 23 C 0.062 3.938 24 O -0.320 6.320 25 C -0.065 4.065 26 C -0.230 4.230 27 H 0.282 0.718 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 -15.875 1.429 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.190 4.190 11 C -0.095 4.095 12 C -0.234 4.234 13 C 0.054 3.946 14 O -0.222 6.222 15 C 0.069 3.931 16 C -0.200 4.200 17 C -0.125 4.125 18 C 0.035 3.965 19 C -0.121 4.121 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.197 4.197 23 C -0.014 4.014 24 O -0.235 6.235 25 C -0.083 4.083 26 C -0.250 4.250 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.212 -15.709 1.388 18.788 hybrid contribution 0.238 0.832 -0.085 0.870 sum -9.974 -14.877 1.303 17.958 Atomic orbital electron populations 1.69834 1.07675 1.29458 1.34075 1.25968 0.94748 1.01513 0.92162 0.86286 0.80772 0.80492 0.79148 1.19478 1.19942 1.18329 1.19657 0.98231 0.91265 1.39468 0.90214 1.17679 0.90807 0.92078 0.87938 1.21289 0.99718 0.96649 1.01347 1.20533 0.97592 0.92494 0.98861 1.18652 1.01250 0.91983 1.11515 1.21461 0.87034 0.95988 0.90166 1.86380 1.46447 1.38170 1.51174 1.19026 0.92455 0.87605 0.93965 1.21119 1.02998 0.96500 0.99396 1.20327 0.96098 0.97195 0.98882 1.18456 0.95341 0.88028 0.94692 1.19529 1.00044 0.96270 0.96265 1.20175 0.96245 0.97525 1.00730 1.20479 0.96626 0.95945 0.98477 1.22233 1.03077 0.97246 0.97114 1.22890 0.84277 1.02485 0.91710 1.85980 1.33174 1.37338 1.66981 1.20387 0.95232 0.96630 0.96060 1.20961 1.04245 0.92735 1.07036 0.90677 0.86296 0.89358 0.93007 0.92953 0.84769 0.85292 0.85056 0.90298 0.89812 0.89887 0.90446 0.92085 0.87869 0.89332 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.10 10.97 55.55 0.61 -19.49 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.27 29.60 -169.99 -5.03 13.24 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.12 3.12 5.57 -106.83 -0.60 2.52 16 10 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 12 C -0.23 -5.15 5.53 -104.33 -0.58 -5.73 16 13 C 0.13 2.33 4.86 36.01 0.17 2.50 16 14 O -0.31 -5.91 10.12 -19.67 -0.20 -6.11 16 15 C 0.12 1.90 6.68 -39.29 -0.26 1.63 16 16 C -0.18 -2.60 9.03 -39.51 -0.36 -2.96 16 17 C -0.11 -1.41 9.93 -39.36 -0.39 -1.80 16 18 C 0.08 1.05 6.47 -39.21 -0.25 0.80 16 19 C -0.12 -1.55 5.75 -104.44 -0.60 -2.15 16 20 C -0.13 -1.89 9.60 -39.37 -0.38 -2.27 16 21 C -0.08 -0.74 5.86 -27.81 -0.16 -0.90 16 22 C -0.16 -1.22 6.19 -26.49 -0.16 -1.38 16 23 C 0.06 0.51 7.03 37.37 0.26 0.77 16 24 O -0.32 -3.86 10.27 -19.57 -0.20 -4.06 16 25 C -0.06 -1.46 9.67 -39.66 -0.38 -1.85 16 26 C -0.23 -5.65 9.80 -38.88 -0.38 -6.03 16 27 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 28 H 0.12 3.16 6.17 -52.49 -0.32 2.83 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.05 0.85 7.59 -51.93 -0.39 0.46 16 31 H 0.05 0.87 7.61 -51.93 -0.40 0.48 16 32 H 0.13 1.74 6.31 -52.48 -0.33 1.41 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -28.79 349.83 -10.42 -39.20 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.64 Total: 6.27 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -5.22 Total: -34.32 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.49 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.40 Total: -10.17 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.79 -10.42 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399017029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.736 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds