Wall clock time and date at job start Tue Mar 31 2020 09:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 C 1.50703 * 119.75127 * 180.27643 * 12 11 10 14 14 O 1.42900 * 109.47255 * 90.00172 * 13 12 11 15 15 C 1.35977 * 117.00006 * 180.02562 * 14 13 12 16 16 C 1.38719 * 120.07193 * 359.72313 * 15 14 13 17 17 C 1.37939 * 119.90152 * 179.84619 * 16 15 14 18 18 C 1.39128 * 120.29755 * 0.51726 * 17 16 15 19 19 C 1.38353 * 119.77655 * 359.61239 * 18 17 16 20 20 C 1.38502 * 119.88689 * 0.17138 * 19 18 17 21 21 C 1.50780 * 121.40769 * 180.32486 * 19 18 17 22 22 C 1.53073 * 109.69194 * 342.17774 * 21 19 18 23 23 C 1.53401 * 108.29447 * 48.22282 * 22 21 19 24 24 O 1.35945 * 118.44039 * 179.46678 * 18 17 16 25 25 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 26 26 C 1.37612 * 120.24660 * 359.97438 * 25 12 11 27 27 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 29 29 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 30 30 H 1.09000 * 109.47397 * 210.00368 * 13 12 11 31 31 H 1.09000 * 109.46654 * 330.00119 * 13 12 11 32 32 H 1.08004 * 120.04821 * 0.07833 * 16 15 14 33 33 H 1.08001 * 119.85268 * 180.26617 * 17 16 15 34 34 H 1.07996 * 119.86326 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.43431 * 102.24383 * 21 19 18 36 36 H 1.09000 * 109.43923 * 222.15553 * 21 19 18 37 37 H 1.08998 * 109.69789 * 167.92119 * 22 21 19 38 38 H 1.09003 * 109.69466 * 288.51897 * 22 21 19 39 39 H 1.08997 * 109.69027 * 54.98671 * 23 22 21 40 40 H 1.09004 * 109.68138 * 175.51469 * 23 22 21 41 41 H 1.08003 * 119.87153 * 179.97438 * 25 12 11 42 42 H 1.08001 * 120.12580 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 6 -0.6331 -6.0230 1.5162 14 8 -1.6564 -6.3239 0.5653 15 6 -2.3885 -7.4492 0.7815 16 6 -2.1233 -8.2501 1.8827 17 6 -2.8702 -9.3891 2.1004 18 6 -3.8820 -9.7450 1.2143 19 6 -4.1443 -8.9474 0.1147 20 6 -3.3968 -7.8015 -0.1007 21 6 -5.2367 -9.2943 -0.8650 22 6 -5.6245 -10.7664 -0.7051 23 6 -5.8364 -11.0492 0.7876 24 8 -4.5872 -10.8812 1.4593 25 6 1.1746 -4.8057 0.2845 26 6 1.8205 -3.6493 -0.0886 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1469 -1.4129 1.5758 29 1 -1.2682 -3.4991 2.2269 30 1 0.0879 -6.8400 1.5449 31 1 -1.0793 -5.8974 2.5027 32 1 -1.3357 -7.9800 2.5707 33 1 -2.6659 -10.0097 2.9604 34 1 -3.6016 -7.1794 -0.9594 35 1 -6.1075 -8.6671 -0.6742 36 1 -4.8811 -9.1219 -1.8808 37 1 -6.5468 -10.9648 -1.2511 38 1 -4.8256 -11.4006 -1.0896 39 1 -6.5683 -10.3509 1.1935 40 1 -6.1909 -12.0714 0.9210 41 1 1.5323 -5.7606 -0.0713 42 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399017029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:11 Heat of formation + Delta-G solvation = -59.183898 kcal Electronic energy + Delta-G solvation = -23753.904503 eV Core-core repulsion = 20241.778723 eV Total energy + Delta-G solvation = -3512.125780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71218 -40.36054 -39.26405 -37.33871 -35.67973 -35.17964 -32.65746 -31.49710 -31.23801 -30.50264 -28.65928 -26.57703 -25.75947 -24.15635 -23.60615 -22.95271 -21.90528 -20.81931 -19.27601 -18.79749 -18.56160 -17.75593 -17.22633 -16.71650 -16.31177 -16.27536 -15.75077 -15.54427 -15.31929 -15.12413 -14.86482 -14.45675 -14.19277 -14.08316 -13.98981 -13.86910 -13.74224 -13.50196 -13.06983 -12.80902 -12.72188 -12.48688 -12.44276 -12.03707 -11.90368 -11.86628 -11.51399 -11.43884 -11.29706 -11.11297 -11.03825 -9.84423 -9.44022 -9.33062 -8.69054 -8.66155 -6.40143 0.23339 0.47155 0.79295 1.10337 1.37421 1.44941 1.53559 2.18449 2.34992 2.45516 2.72027 2.85506 3.66981 3.72295 3.77563 3.83977 3.94689 4.04524 4.15953 4.17013 4.25202 4.41418 4.46022 4.49483 4.53858 4.56587 4.63505 4.70856 4.92142 4.96294 4.97298 4.99680 5.06012 5.11501 5.18247 5.30629 5.38189 5.40378 5.40881 5.62978 5.64986 5.87976 6.05046 6.15130 6.32054 6.44132 6.63979 6.64415 6.88177 6.97145 8.27923 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.002266 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.328136 B =12351.880031 C =12686.309104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.495 4.495 8 H 0.079 0.921 9 C 0.085 3.915 10 C -0.195 4.195 11 C -0.083 4.083 12 C -0.227 4.227 13 C 0.132 3.868 14 O -0.334 6.334 15 C 0.086 3.914 16 C -0.182 4.182 17 C -0.113 4.113 18 C 0.078 3.922 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.082 4.082 22 C -0.153 4.153 23 C 0.051 3.949 24 O -0.331 6.331 25 C -0.068 4.068 26 C -0.247 4.247 27 H 0.290 0.710 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -17.726 1.598 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.524 4.524 8 H 0.098 0.902 9 C 0.083 3.917 10 C -0.214 4.214 11 C -0.101 4.101 12 C -0.228 4.228 13 C 0.059 3.941 14 O -0.250 6.250 15 C 0.040 3.960 16 C -0.200 4.200 17 C -0.131 4.131 18 C 0.033 3.967 19 C -0.123 4.123 20 C -0.159 4.159 21 C -0.119 4.119 22 C -0.191 4.191 23 C -0.023 4.023 24 O -0.246 6.246 25 C -0.086 4.086 26 C -0.266 4.266 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.351 -17.592 1.555 20.994 hybrid contribution 0.419 1.147 -0.131 1.228 sum -10.932 -16.446 1.424 19.799 Atomic orbital electron populations 1.69886 1.09176 1.30816 1.34759 1.26850 0.95503 1.04792 0.91069 0.85149 0.79202 0.75651 0.79462 1.18646 1.18933 1.18068 1.19910 0.98532 0.92449 1.41481 0.90249 1.18041 0.91633 0.93223 0.88808 1.21273 1.00629 0.96957 1.02568 1.20793 0.97875 0.92471 0.98979 1.19077 1.00812 0.93223 1.09672 1.21367 0.87564 0.94629 0.90576 1.86266 1.47136 1.39924 1.51636 1.19251 0.93428 0.87601 0.95686 1.21241 1.03382 0.96503 0.98901 1.20601 0.95866 0.97061 0.99575 1.18661 0.95266 0.88254 0.94521 1.19873 1.00361 0.95280 0.96808 1.20349 0.96451 0.98359 1.00706 1.20614 0.95877 0.97605 0.97805 1.22234 1.04278 0.95528 0.97023 1.23262 0.82816 1.04407 0.91842 1.85972 1.34555 1.36480 1.67631 1.20727 0.95048 0.97212 0.95637 1.21185 1.04898 0.92985 1.07530 0.89928 0.87883 0.87636 0.90867 0.91347 0.83581 0.83364 0.85187 0.89145 0.89211 0.86888 0.91052 0.91394 0.85131 0.86488 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.39 10.97 21.82 0.24 -43.15 16 2 C 0.03 1.69 5.14 85.26 0.44 2.13 16 3 Si 0.99 38.03 29.60 68.60 2.03 40.06 16 4 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.49 -26.90 9.05 23.46 0.21 -26.69 16 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 9 C 0.09 4.71 5.57 -21.29 -0.12 4.59 16 10 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 11 C -0.08 -3.95 9.67 22.22 0.21 -3.73 16 12 C -0.23 -9.94 5.53 -19.67 -0.11 -10.05 16 13 C 0.13 4.66 4.86 71.24 0.35 5.01 16 14 O -0.33 -12.67 10.12 -93.29 -0.94 -13.62 16 15 C 0.09 2.75 6.68 22.46 0.15 2.90 16 16 C -0.18 -4.96 9.03 22.31 0.20 -4.75 16 17 C -0.11 -2.79 9.93 22.41 0.22 -2.57 16 18 C 0.08 1.93 6.47 22.51 0.15 2.07 16 19 C -0.12 -2.98 5.75 -19.75 -0.11 -3.10 16 20 C -0.14 -4.06 9.60 22.40 0.22 -3.85 16 21 C -0.08 -1.37 5.86 29.90 0.18 -1.20 16 22 C -0.15 -1.86 6.19 30.75 0.19 -1.67 16 23 C 0.05 0.68 7.03 72.12 0.51 1.19 16 24 O -0.33 -7.18 10.27 -92.93 -0.95 -8.13 16 25 C -0.07 -3.06 9.67 22.22 0.21 -2.84 16 26 C -0.25 -12.36 9.80 22.73 0.22 -12.14 16 27 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 28 H 0.10 5.77 6.17 -2.91 -0.02 5.75 16 29 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.07 2.25 7.59 -2.39 -0.02 2.23 16 31 H 0.07 2.17 7.61 -2.39 -0.02 2.15 16 32 H 0.15 3.50 6.31 -2.91 -0.02 3.48 16 33 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 42 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -64.31 349.83 4.71 -59.60 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 1.02 Total: 30.24 kcal Atomic # 6 Polarization: -68.31 SS G_CDS: 3.31 Total: -65.00 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.24 Total: -43.15 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.90 Total: -21.75 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -64.31 4.71 -59.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399017029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.416 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds