Wall clock time and date at job start Tue Mar 31 2020 10:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 C 1.53002 * 109.46863 * 119.99386 * 2 1 3 5 5 C 1.53001 * 109.47350 * 60.00605 * 4 2 1 6 6 C 1.53005 * 109.47208 * 300.00395 * 4 2 1 7 7 S 1.81401 * 109.47052 * 180.02562 * 4 2 1 8 8 O 1.42096 * 108.58127 * 65.51047 * 7 4 2 9 9 O 1.42097 * 108.57563 * 294.48552 * 7 4 2 10 10 C 1.81405 * 101.92278 * 180.02562 * 7 4 2 11 11 C 1.50695 * 109.47047 * 179.97438 * 10 7 4 12 12 C 1.38641 * 119.74960 * 270.29261 * 11 10 7 13 13 C 1.37613 * 120.24587 * 180.30483 * 12 11 10 14 14 C 1.40709 * 119.74954 * 359.42635 * 13 12 11 15 15 C 1.41391 * 120.24881 * 180.29949 * 14 13 12 16 16 H 1.08004 * 120.00321 * 24.37553 * 15 14 13 17 17 C 1.39949 * 120.00394 * 204.37955 * 15 14 13 18 18 N 1.30826 * 119.99793 * 17.83971 * 17 15 14 19 19 Si 1.86793 * 120.00334 * 197.84214 * 17 15 14 20 20 H 1.48499 * 109.47118 * 89.99811 * 19 17 15 21 21 H 1.48498 * 109.47443 * 210.00158 * 19 17 15 22 22 H 1.48505 * 109.47294 * 329.99982 * 19 17 15 23 23 C 1.40717 * 119.50871 * 0.27696 * 14 13 12 24 24 C 1.37615 * 119.74803 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.47682 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.46638 * 60.00614 * 1 2 3 27 27 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47682 * 239.99844 * 2 1 3 29 29 H 1.08998 * 109.47319 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47171 * 299.99699 * 3 2 1 31 31 H 1.08997 * 109.47048 * 59.99457 * 3 2 1 32 32 H 1.08991 * 109.47341 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.46345 * 300.00027 * 5 4 2 34 34 H 1.08998 * 109.47215 * 59.99368 * 5 4 2 35 35 H 1.09004 * 109.46827 * 299.99657 * 6 4 2 36 36 H 1.08998 * 109.47091 * 60.00179 * 6 4 2 37 37 H 1.09004 * 109.46847 * 180.02562 * 6 4 2 38 38 H 1.08995 * 109.47092 * 59.99718 * 10 7 4 39 39 H 1.09001 * 109.46606 * 300.00023 * 10 7 4 40 40 H 1.07998 * 119.87235 * 0.02562 * 12 11 10 41 41 H 1.08007 * 120.12325 * 179.70340 * 13 12 11 42 42 H 0.97001 * 120.00110 * 179.97438 * 18 17 15 43 43 H 1.08004 * 120.12753 * 180.02562 * 23 14 13 44 44 H 1.08003 * 119.87743 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5301 -2.1637 1.2495 6 6 1.5298 0.0002 2.4985 7 16 3.8540 -0.7205 1.2498 8 8 4.3062 0.6203 1.3793 9 8 4.3071 -1.5028 0.1535 10 6 4.2287 -1.6086 2.7866 11 6 5.7226 -1.7077 2.9580 12 6 6.4053 -2.7920 2.4287 13 6 7.7686 -2.8960 2.5846 14 6 8.4713 -1.8904 3.2738 15 6 9.8729 -1.9833 3.4347 16 1 10.4591 -2.5647 2.7383 17 6 10.5009 -1.3221 4.4963 18 7 9.7977 -0.9178 5.5227 19 14 12.3430 -1.0166 4.4477 20 1 12.6108 0.2927 3.8000 21 1 12.8793 -1.0027 5.8324 22 1 13.0037 -2.0969 3.6718 23 6 7.7687 -0.7912 3.8014 24 6 6.4046 -0.7105 3.6380 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.8929 -2.6773 2.1397 33 1 0.4400 -2.1636 1.2494 34 1 1.8934 -2.6776 0.3595 35 1 1.8932 1.0279 2.4985 36 1 0.4398 0.0001 2.4985 37 1 1.8935 -0.5133 3.3886 38 1 3.8013 -2.6102 2.7408 39 1 3.8005 -1.0692 3.6315 40 1 5.8646 -3.5602 1.8960 41 1 8.2979 -3.7440 2.1756 42 1 10.2329 -0.4598 6.2587 43 1 8.2980 -0.0134 4.3318 44 1 5.8634 0.1324 4.0418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431646551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:27 Heat of formation + Delta-G solvation = -72.645751 kcal Electronic energy + Delta-G solvation = -24263.362280 eV Core-core repulsion = 20886.096701 eV Total energy + Delta-G solvation = -3377.265578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -38.26449 -37.75767 -36.50801 -35.48804 -34.17472 -32.07749 -31.09631 -29.40316 -28.05956 -27.76800 -26.96582 -24.20962 -23.53182 -21.13648 -20.48427 -19.62888 -18.00153 -17.41875 -16.76497 -16.11999 -15.55181 -15.36817 -14.98522 -14.58238 -14.39075 -13.88858 -13.85661 -13.42649 -13.26396 -13.09703 -12.66795 -12.45960 -12.39415 -12.05956 -12.03582 -11.88273 -11.81304 -11.68650 -11.56592 -11.50389 -11.36765 -11.15828 -11.01834 -10.86966 -10.76724 -10.71597 -10.67811 -10.26370 -9.83679 -9.62938 -9.49430 -9.20202 -7.57810 -7.41314 -6.90731 -4.47111 0.36193 2.64620 2.99415 3.01984 3.05408 3.10287 3.26301 3.83897 3.99322 4.18870 4.39651 4.50824 4.61655 4.74608 4.97816 5.05330 5.22848 5.33133 5.36729 5.38097 5.49479 5.52688 5.55865 5.56844 5.60440 5.71697 5.77905 5.80636 5.94823 6.01585 6.11539 6.18246 6.24327 6.30016 6.32845 6.86226 6.93546 7.13213 7.21496 7.48981 7.69849 7.93107 7.93723 8.15304 8.50317 8.74369 8.82863 10.02399 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.003307 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.298445 B = 8465.090932 C = 8615.370178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.549 4.549 5 C -0.140 4.140 6 C -0.141 4.141 7 S 2.386 3.614 8 O -0.938 6.938 9 O -0.944 6.944 10 C -0.505 4.505 11 C -0.231 4.231 12 C -0.067 4.067 13 C -0.226 4.226 14 C 0.117 3.883 15 C -0.448 4.448 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.781 5.781 19 Si 0.913 3.087 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.260 1.260 23 C -0.167 4.167 24 C -0.078 4.078 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.284 0.716 43 H 0.123 0.877 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 1.212 -3.908 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 C -0.243 4.243 4 C -0.636 4.636 5 C -0.197 4.197 6 C -0.199 4.199 7 S 2.574 3.426 8 O -0.935 6.935 9 O -0.941 6.941 10 C -0.635 4.635 11 C -0.236 4.236 12 C -0.086 4.086 13 C -0.246 4.246 14 C 0.114 3.886 15 C -0.477 4.477 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.186 4.186 24 C -0.098 4.098 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.892 1.720 -4.359 15.612 hybrid contribution 0.091 -0.193 0.658 0.692 sum -14.802 1.526 -3.701 15.333 Atomic orbital electron populations 1.21869 0.94116 1.02004 1.01953 1.20884 0.97578 0.96141 0.94618 1.22426 1.03940 0.95196 1.02695 1.30001 1.27064 1.03170 1.03320 1.21806 1.03321 0.91264 1.03353 1.21861 1.03272 1.00978 0.93742 1.10052 0.76632 0.76710 0.79224 1.93480 1.78220 1.34985 1.86807 1.93495 1.78096 1.71501 1.51030 1.28728 1.04034 1.12500 1.18221 1.18099 0.88998 1.01800 1.14681 1.20472 0.94752 0.95848 0.97543 1.20984 0.93162 1.00403 1.10029 1.17735 0.93245 0.89387 0.88228 1.19760 0.92460 1.26065 1.09408 0.89871 1.26015 1.01367 0.93063 0.94154 1.69820 1.38660 1.27203 1.04874 0.86228 0.81516 0.80133 0.78443 1.19012 1.20164 1.18414 1.21321 0.92601 0.99491 1.05227 1.20602 0.95128 0.96427 0.97648 0.92098 0.92495 0.92219 0.90055 0.89899 0.91921 0.91394 0.91271 0.90550 0.90766 0.90394 0.90590 0.91355 0.86148 0.85992 0.88673 0.88338 0.90486 0.85956 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.49 37.16 0.32 -0.91 16 2 C -0.07 -0.83 2.28 -90.62 -0.21 -1.04 16 3 C -0.19 -2.25 8.30 37.16 0.31 -1.95 16 4 C -0.55 -6.48 0.41 -90.62 -0.04 -6.52 16 5 C -0.14 -1.38 7.87 37.16 0.29 -1.08 16 6 C -0.14 -1.40 7.52 37.16 0.28 -1.12 16 7 S 2.39 40.55 3.43 -107.50 -0.37 40.18 16 8 O -0.94 -18.46 15.13 -57.83 -0.87 -19.34 16 9 O -0.94 -19.08 17.91 -57.83 -1.04 -20.12 16 10 C -0.50 -8.36 5.02 36.00 0.18 -8.18 16 11 C -0.23 -5.09 5.16 -104.33 -0.54 -5.63 16 12 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 13 C -0.23 -5.58 9.80 -38.88 -0.38 -5.96 16 14 C 0.12 3.12 5.57 -106.83 -0.60 2.53 16 15 C -0.45 -11.63 9.05 -37.74 -0.34 -11.97 16 16 H 0.08 2.06 7.91 -52.48 -0.41 1.65 16 17 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.78 -19.54 10.95 55.55 0.61 -18.93 16 19 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 24 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 25 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.24 5.27 -51.93 -0.27 0.96 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 32 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 33 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 34 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.08 0.81 6.34 -51.93 -0.33 0.48 16 36 H 0.08 0.61 6.43 -51.93 -0.33 0.27 16 37 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 38 H 0.12 1.64 6.81 -51.93 -0.35 1.29 16 39 H 0.12 1.68 6.81 -51.92 -0.35 1.33 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 41 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 42 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 43 H 0.12 3.24 6.16 -52.48 -0.32 2.92 16 44 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -30.95 350.49 -9.83 -40.77 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.49 Total: 8.00 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: -1.92 Total: -48.94 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: 0.61 Total: -18.93 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -1.91 Total: -39.46 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 40.55 SS G_CDS: -0.37 Total: 40.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.95 -9.83 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431646551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.871 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds