Wall clock time and date at job start Tue Mar 31 2020 10:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 C 1.53002 * 109.46863 * 119.99386 * 2 1 3 5 5 C 1.53001 * 109.47350 * 60.00605 * 4 2 1 6 6 C 1.53005 * 109.47208 * 300.00395 * 4 2 1 7 7 S 1.81401 * 109.47052 * 180.02562 * 4 2 1 8 8 O 1.42096 * 108.58127 * 65.51047 * 7 4 2 9 9 O 1.42097 * 108.57563 * 294.48552 * 7 4 2 10 10 C 1.81405 * 101.92278 * 180.02562 * 7 4 2 11 11 C 1.50695 * 109.47047 * 179.97438 * 10 7 4 12 12 C 1.38641 * 119.74960 * 270.29261 * 11 10 7 13 13 C 1.37613 * 120.24587 * 180.30483 * 12 11 10 14 14 C 1.40709 * 119.74954 * 359.42635 * 13 12 11 15 15 C 1.41391 * 120.24881 * 180.29949 * 14 13 12 16 16 H 1.08004 * 120.00321 * 24.37553 * 15 14 13 17 17 C 1.39949 * 120.00394 * 204.37955 * 15 14 13 18 18 N 1.30826 * 119.99793 * 17.83971 * 17 15 14 19 19 Si 1.86793 * 120.00334 * 197.84214 * 17 15 14 20 20 H 1.48499 * 109.47118 * 89.99811 * 19 17 15 21 21 H 1.48498 * 109.47443 * 210.00158 * 19 17 15 22 22 H 1.48505 * 109.47294 * 329.99982 * 19 17 15 23 23 C 1.40717 * 119.50871 * 0.27696 * 14 13 12 24 24 C 1.37615 * 119.74803 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.47682 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.46638 * 60.00614 * 1 2 3 27 27 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47682 * 239.99844 * 2 1 3 29 29 H 1.08998 * 109.47319 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47171 * 299.99699 * 3 2 1 31 31 H 1.08997 * 109.47048 * 59.99457 * 3 2 1 32 32 H 1.08991 * 109.47341 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.46345 * 300.00027 * 5 4 2 34 34 H 1.08998 * 109.47215 * 59.99368 * 5 4 2 35 35 H 1.09004 * 109.46827 * 299.99657 * 6 4 2 36 36 H 1.08998 * 109.47091 * 60.00179 * 6 4 2 37 37 H 1.09004 * 109.46847 * 180.02562 * 6 4 2 38 38 H 1.08995 * 109.47092 * 59.99718 * 10 7 4 39 39 H 1.09001 * 109.46606 * 300.00023 * 10 7 4 40 40 H 1.07998 * 119.87235 * 0.02562 * 12 11 10 41 41 H 1.08007 * 120.12325 * 179.70340 * 13 12 11 42 42 H 0.97001 * 120.00110 * 179.97438 * 18 17 15 43 43 H 1.08004 * 120.12753 * 180.02562 * 23 14 13 44 44 H 1.08003 * 119.87743 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5301 -2.1637 1.2495 6 6 1.5298 0.0002 2.4985 7 16 3.8540 -0.7205 1.2498 8 8 4.3062 0.6203 1.3793 9 8 4.3071 -1.5028 0.1535 10 6 4.2287 -1.6086 2.7866 11 6 5.7226 -1.7077 2.9580 12 6 6.4053 -2.7920 2.4287 13 6 7.7686 -2.8960 2.5846 14 6 8.4713 -1.8904 3.2738 15 6 9.8729 -1.9833 3.4347 16 1 10.4591 -2.5647 2.7383 17 6 10.5009 -1.3221 4.4963 18 7 9.7977 -0.9178 5.5227 19 14 12.3430 -1.0166 4.4477 20 1 12.6108 0.2927 3.8000 21 1 12.8793 -1.0027 5.8324 22 1 13.0037 -2.0969 3.6718 23 6 7.7687 -0.7912 3.8014 24 6 6.4046 -0.7105 3.6380 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.8929 -2.6773 2.1397 33 1 0.4400 -2.1636 1.2494 34 1 1.8934 -2.6776 0.3595 35 1 1.8932 1.0279 2.4985 36 1 0.4398 0.0001 2.4985 37 1 1.8935 -0.5133 3.3886 38 1 3.8013 -2.6102 2.7408 39 1 3.8005 -1.0692 3.6315 40 1 5.8646 -3.5602 1.8960 41 1 8.2979 -3.7440 2.1756 42 1 10.2329 -0.4598 6.2587 43 1 8.2980 -0.0134 4.3318 44 1 5.8634 0.1324 4.0418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431646551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:26 Heat of formation + Delta-G solvation = -91.441175 kcal Electronic energy + Delta-G solvation = -24264.177310 eV Core-core repulsion = 20886.096701 eV Total energy + Delta-G solvation = -3378.080609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.59344 -39.16218 -37.94186 -36.91771 -35.96674 -33.45725 -32.34038 -31.28425 -29.45503 -28.82235 -27.73032 -25.96877 -24.43608 -23.02552 -22.20086 -20.78371 -19.31817 -19.25913 -17.81837 -17.52351 -17.16367 -16.81028 -16.05152 -15.94602 -15.69296 -15.60241 -15.32545 -14.41576 -14.39106 -14.14721 -13.95407 -13.92057 -13.72247 -13.52139 -13.26859 -13.23151 -12.99861 -12.95034 -12.86721 -12.73446 -12.65775 -12.53405 -12.34622 -12.25309 -12.02940 -11.82636 -11.65558 -11.59732 -11.54414 -11.35740 -11.07077 -10.72046 -9.48008 -9.27025 -8.72044 -6.41400 -0.93996 0.86710 1.05549 1.36740 1.49509 1.50588 1.96028 2.17525 2.62542 2.80733 3.07930 3.40464 3.56267 3.64653 3.83959 3.91462 4.02114 4.18598 4.25392 4.42692 4.45899 4.49909 4.64127 4.67891 4.74399 4.76406 4.81132 4.85302 4.94092 4.97058 5.03692 5.07520 5.12523 5.17288 5.24164 5.28246 5.33961 5.43943 5.48015 5.60171 5.83011 6.01193 6.03695 6.27088 6.59490 6.83914 6.92049 8.24603 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.003307 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.298445 B = 8465.090932 C = 8615.370178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.192 4.192 4 C -0.506 4.506 5 C -0.151 4.151 6 C -0.152 4.152 7 S 2.376 3.624 8 O -0.977 6.977 9 O -0.988 6.988 10 C -0.518 4.518 11 C -0.227 4.227 12 C -0.079 4.079 13 C -0.247 4.247 14 C 0.084 3.916 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.815 5.815 19 Si 0.987 3.013 20 H -0.263 1.263 21 H -0.263 1.263 22 H -0.257 1.257 23 C -0.195 4.195 24 C -0.091 4.091 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.292 0.708 43 H 0.107 0.893 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.055 0.997 -3.796 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.250 4.250 4 C -0.600 4.600 5 C -0.208 4.208 6 C -0.210 4.210 7 S 2.569 3.431 8 O -0.974 6.974 9 O -0.985 6.985 10 C -0.647 4.647 11 C -0.230 4.230 12 C -0.098 4.098 13 C -0.267 4.267 14 C 0.081 3.919 15 C -0.521 4.521 16 H 0.098 0.902 17 C -0.182 4.182 18 N -0.440 5.440 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.214 4.214 24 C -0.111 4.111 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.475 1.481 -4.220 19.009 hybrid contribution 0.832 -0.091 0.508 0.979 sum -17.643 1.390 -3.712 18.083 Atomic orbital electron populations 1.21887 0.90951 1.03437 1.03239 1.21032 0.99994 0.95152 0.93814 1.22482 1.01786 0.96488 1.04202 1.29603 1.19448 1.05718 1.05206 1.22035 1.05524 0.89197 1.04094 1.22084 1.05466 1.00515 0.92907 1.09656 0.79827 0.75440 0.78228 1.93451 1.80861 1.36132 1.86920 1.93447 1.80818 1.72065 1.52150 1.28859 1.00394 1.15492 1.19976 1.18560 0.92181 1.00193 1.12109 1.20868 0.94333 0.97020 0.97594 1.21233 0.94403 1.00504 1.10547 1.18076 0.94130 0.90238 0.89422 1.19961 0.92784 1.28451 1.10857 0.90160 1.26857 1.06075 0.92153 0.93134 1.69860 1.40688 1.27920 1.05532 0.85137 0.75429 0.79833 0.78944 1.18775 1.18748 1.18018 1.21333 0.93887 0.99555 1.06653 1.20920 0.94583 0.97636 0.97916 0.90659 0.91560 0.90676 0.91022 0.93321 0.90338 0.90156 0.89492 0.87162 0.91406 0.91097 0.87187 0.89649 0.82609 0.82802 0.85902 0.87724 0.89711 0.87517 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.49 71.98 0.61 -1.05 16 2 C -0.08 -1.57 2.28 -10.79 -0.02 -1.59 16 3 C -0.19 -4.34 8.30 71.98 0.60 -3.74 16 4 C -0.51 -10.07 0.41 -10.79 0.00 -10.08 16 5 C -0.15 -2.21 7.87 71.98 0.57 -1.65 16 6 C -0.15 -2.27 7.52 71.98 0.54 -1.73 16 7 S 2.38 77.99 3.43 -56.49 -0.19 77.79 16 8 O -0.98 -38.79 15.13 -127.37 -1.93 -40.72 16 9 O -0.99 -39.94 17.91 -127.37 -2.28 -42.22 16 10 C -0.52 -15.90 5.02 71.23 0.36 -15.54 16 11 C -0.23 -9.98 5.16 -19.67 -0.10 -10.09 16 12 C -0.08 -3.66 9.67 22.22 0.21 -3.44 16 13 C -0.25 -12.79 9.80 22.73 0.22 -12.57 16 14 C 0.08 4.76 5.57 -21.29 -0.12 4.64 16 15 C -0.49 -27.16 9.05 23.46 0.21 -26.95 16 16 H 0.08 4.26 7.91 -2.91 -0.02 4.24 16 17 C 0.03 1.74 5.14 85.26 0.44 2.18 16 18 N -0.81 -42.71 10.95 21.83 0.24 -42.48 16 19 Si 0.99 38.41 29.59 68.60 2.03 40.44 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 C -0.19 -10.74 8.70 22.73 0.20 -10.55 16 24 C -0.09 -4.45 9.67 22.22 0.21 -4.23 16 25 H 0.07 0.73 6.43 -2.39 -0.02 0.71 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.71 6.43 -2.39 -0.02 0.70 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.45 5.27 -2.39 -0.01 1.44 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.57 6.43 -2.39 -0.02 1.56 16 32 H 0.09 1.00 6.56 -2.39 -0.02 0.99 16 33 H 0.11 0.99 6.43 -2.39 -0.02 0.98 16 34 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 35 H 0.07 1.22 6.34 -2.38 -0.02 1.21 16 36 H 0.11 1.02 6.43 -2.39 -0.02 1.01 16 37 H 0.08 1.02 6.55 -2.38 -0.02 1.01 16 38 H 0.16 3.64 6.81 -2.39 -0.02 3.62 16 39 H 0.15 3.70 6.81 -2.39 -0.02 3.69 16 40 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 41 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 42 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 43 H 0.11 6.07 6.16 -2.91 -0.02 6.05 16 44 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -73.90 350.49 2.79 -71.11 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.99 Total: 32.46 kcal Atomic # 6 Polarization: -100.32 SS G_CDS: 3.92 Total: -96.39 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.24 Total: -42.48 kcal Atomic # 8 Polarization: -78.73 SS G_CDS: -4.21 Total: -82.94 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 16 Polarization: 77.99 SS G_CDS: -0.19 Total: 77.79 kcal Total: -73.90 2.79 -71.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431646551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.330 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds