Wall clock time and date at job start Tue Mar 31 2020 10:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99932 * 2 1 4 4 O 1.42901 * 109.46909 * 135.00595 * 3 2 1 5 5 C 1.35984 * 117.00210 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00349 * 179.97438 * 5 4 3 7 7 C 1.38135 * 119.99829 * 180.02562 * 6 5 4 8 8 C 1.38694 * 120.00329 * 359.97438 * 7 6 5 9 9 O 1.35985 * 119.99942 * 179.97438 * 8 7 6 10 10 C 1.42894 * 116.99717 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47114 * 180.02562 * 10 9 8 12 12 C 1.38633 * 119.74675 * 269.72870 * 11 10 9 13 13 C 1.37620 * 120.24615 * 179.71626 * 12 11 10 14 14 C 1.40718 * 119.74411 * 0.57380 * 13 12 11 15 15 C 1.41397 * 120.24530 * 179.67786 * 14 13 12 16 16 H 1.08001 * 120.00291 * 204.40564 * 15 14 13 17 17 C 1.39947 * 119.99876 * 24.40755 * 15 14 13 18 18 N 1.30822 * 119.99799 * 17.84526 * 17 15 14 19 19 Si 1.86797 * 119.99729 * 197.84452 * 17 15 14 20 20 H 1.48498 * 109.47324 * 60.00298 * 19 17 15 21 21 H 1.48506 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47664 * 299.99955 * 19 17 15 23 23 C 1.40711 * 119.51185 * 359.70093 * 14 13 12 24 24 C 1.37618 * 119.74457 * 0.02562 * 23 14 13 25 25 C 1.38703 * 119.99780 * 0.25835 * 8 7 6 26 26 C 1.38126 * 120.00112 * 359.48643 * 25 8 7 27 27 H 1.07995 * 119.99953 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00063 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99736 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47341 * 15.00376 * 3 2 1 31 31 H 1.09003 * 109.47635 * 255.00065 * 3 2 1 32 32 H 1.08000 * 119.99811 * 359.97438 * 6 5 4 33 33 H 1.08004 * 119.99223 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47405 * 300.00059 * 10 9 8 35 35 H 1.08999 * 109.47583 * 59.99915 * 10 9 8 36 36 H 1.07995 * 119.87715 * 359.97438 * 12 11 10 37 37 H 1.07994 * 120.13119 * 180.27392 * 13 12 11 38 38 H 0.97005 * 119.99550 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.12863 * 179.97438 * 23 14 13 40 40 H 1.08009 * 119.87664 * 180.02562 * 24 23 14 41 41 H 1.08001 * 119.99599 * 179.72193 * 25 8 7 42 42 H 1.08000 * 120.00033 * 180.23437 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9096 2.3458 1.0790 6 6 4.9593 2.3519 1.9856 7 6 5.7542 3.4743 2.1143 8 6 5.5030 4.5949 1.3367 9 8 6.2853 5.7000 1.4638 10 6 5.9690 6.8178 0.6318 11 6 6.9357 7.9401 0.9094 12 6 6.6367 8.8803 1.8833 13 6 7.5148 9.9061 2.1493 14 6 8.7141 10.0052 1.4201 15 6 9.6207 11.0587 1.6799 16 1 10.3104 11.3793 0.9131 17 6 9.6244 11.6861 2.9309 18 7 9.0633 11.1010 3.9577 19 14 10.4305 13.3589 3.1344 20 1 9.7641 14.3414 2.2423 21 1 10.3001 13.8028 4.5455 22 1 11.8686 13.2621 2.7774 23 6 9.0044 9.0485 0.4300 24 6 8.1143 8.0279 0.1848 25 6 4.4504 4.5905 0.4335 26 6 3.6588 3.4664 0.3010 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4755 1.4868 -0.9926 32 1 5.1546 1.4794 2.5915 33 1 6.5713 3.4791 2.8206 34 1 6.0445 6.5244 -0.4153 35 1 4.9532 7.1521 0.8430 36 1 5.7133 8.8052 2.4382 37 1 7.2820 10.6350 2.9115 38 1 9.0662 11.5358 4.8249 39 1 9.9218 9.1152 -0.1360 40 1 8.3352 7.2921 -0.5744 41 1 4.2520 5.4647 -0.1688 42 1 2.8414 3.4616 -0.4050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543149271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:53 Heat of formation + Delta-G solvation = -15.166033 kcal Electronic energy + Delta-G solvation = -23135.037193 eV Core-core repulsion = 19624.820171 eV Total energy + Delta-G solvation = -3510.217022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.34383 -38.99227 -37.57371 -36.30178 -34.29697 -33.83122 -31.21126 -30.77048 -29.37080 -28.92929 -27.05795 -26.63666 -24.14768 -22.56213 -21.75294 -21.07426 -20.36420 -19.92107 -18.40619 -17.55018 -17.37078 -16.61597 -16.11144 -15.53569 -15.14101 -15.08517 -14.78218 -14.39170 -13.92902 -13.76163 -13.42045 -13.32616 -13.21010 -13.02053 -12.55445 -12.44946 -12.06203 -11.97431 -11.67407 -11.51184 -11.41877 -11.15090 -11.06368 -10.77373 -10.69061 -10.37255 -10.20945 -9.86498 -9.70234 -9.46000 -9.21215 -9.04916 -7.59867 -7.54835 -7.43934 -6.84963 -4.45238 1.28007 1.55505 1.67002 2.56906 3.01282 3.02413 3.03502 3.08382 3.21000 3.79656 3.85097 3.89584 4.45044 4.60105 4.62996 4.78134 4.81143 4.93439 5.05798 5.23569 5.36514 5.47204 5.50599 5.60497 5.61053 5.70548 5.91758 5.95251 6.09216 6.12689 6.20133 6.26016 6.29956 6.32067 6.45687 6.65152 6.88149 6.98845 7.19596 7.27998 7.31500 7.52918 7.72465 7.86993 7.96797 8.02392 8.20785 8.55163 8.79952 8.88293 10.08855 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.043789 B = 0.001964 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.274149 B =14252.737303 C =14343.720313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.087 3.913 4 O -0.315 6.315 5 C 0.076 3.924 6 C -0.109 4.109 7 C -0.120 4.120 8 C 0.110 3.890 9 O -0.307 6.307 10 C 0.128 3.872 11 C -0.234 4.234 12 C -0.076 4.076 13 C -0.171 4.171 14 C 0.118 3.882 15 C -0.458 4.458 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.230 4.230 24 C -0.065 4.065 25 C -0.177 4.177 26 C -0.167 4.167 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 -14.846 -5.297 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.012 3.988 4 O -0.230 6.230 5 C 0.032 3.968 6 C -0.128 4.128 7 C -0.139 4.139 8 C 0.063 3.937 9 O -0.221 6.221 10 C 0.054 3.946 11 C -0.235 4.235 12 C -0.095 4.095 13 C -0.190 4.190 14 C 0.115 3.885 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.250 4.250 24 C -0.083 4.083 25 C -0.195 4.195 26 C -0.186 4.186 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.566 -14.942 -4.812 20.108 hybrid contribution 0.099 0.900 -0.150 0.918 sum -12.467 -14.041 -4.962 19.422 Atomic orbital electron populations 1.23882 0.95452 1.02537 0.99288 1.22691 0.95645 0.97890 1.00914 1.21758 0.88104 0.96564 0.92382 1.86056 1.42279 1.35865 1.58789 1.18780 0.93463 0.86520 0.98029 1.20184 0.94482 0.98886 0.99244 1.20325 1.01504 0.90907 1.01134 1.19132 0.91097 0.88440 0.94992 1.86390 1.52848 1.21230 1.61654 1.21448 0.97578 0.83351 0.92212 1.18646 0.99406 0.99024 1.06464 1.20530 0.98024 0.95272 0.95651 1.21291 0.94185 0.99996 1.03514 1.17679 0.91128 0.90234 0.89467 1.19639 1.16823 1.14127 0.98073 0.90232 1.25969 0.94253 0.98827 0.95340 1.69825 1.33996 1.36421 1.00746 0.86327 0.80357 0.81790 0.78059 1.18720 1.20240 1.18898 1.20956 0.99935 0.98372 1.05724 1.20382 0.93338 0.96879 0.97697 1.21113 0.97277 0.99551 1.01605 1.20975 1.02126 0.93470 1.01991 0.88241 0.87500 0.86300 0.91678 0.91228 0.84837 0.84449 0.93095 0.93029 0.89365 0.86267 0.90584 0.88764 0.89343 0.85136 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 14.31 29.01 0.42 -0.62 16 2 C -0.15 -1.13 9.89 -36.03 -0.36 -1.49 16 3 C 0.09 0.75 5.15 36.00 0.19 0.94 16 4 O -0.32 -3.72 10.12 -19.69 -0.20 -3.92 16 5 C 0.08 0.98 6.69 -39.24 -0.26 0.71 16 6 C -0.11 -1.40 9.98 -39.45 -0.39 -1.80 16 7 C -0.12 -1.72 9.98 -39.45 -0.39 -2.12 16 8 C 0.11 1.76 6.69 -39.24 -0.26 1.50 16 9 O -0.31 -5.84 10.12 -19.69 -0.20 -6.03 16 10 C 0.13 2.32 4.85 36.01 0.17 2.49 16 11 C -0.23 -5.17 5.53 -104.33 -0.58 -5.74 16 12 C -0.08 -1.78 9.67 -39.66 -0.38 -2.17 16 13 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 14 C 0.12 3.11 5.57 -106.82 -0.60 2.52 16 15 C -0.46 -11.95 9.05 -37.74 -0.34 -12.29 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.79 -20.05 10.95 55.55 0.61 -19.44 16 19 Si 0.91 18.25 29.59 -169.99 -5.03 13.21 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 24 C -0.06 -1.45 9.67 -39.66 -0.38 -1.84 16 25 C -0.18 -2.46 9.03 -39.45 -0.36 -2.82 16 26 C -0.17 -2.05 9.03 -39.45 -0.36 -2.41 16 27 H 0.10 0.52 7.90 -52.49 -0.41 0.11 16 28 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 29 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 30 H 0.07 0.51 7.38 -51.93 -0.38 0.13 16 31 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.05 0.83 7.61 -51.93 -0.40 0.44 16 35 H 0.05 0.86 7.59 -51.93 -0.39 0.46 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.12 3.16 6.15 -52.49 -0.32 2.83 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.13 1.66 6.29 -52.49 -0.33 1.33 16 42 H 0.13 1.21 6.29 -52.49 -0.33 0.88 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -28.44 360.33 -9.56 -38.00 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.48 Total: 6.87 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -4.70 Total: -34.12 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.40 Total: -9.96 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.44 -9.56 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543149271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.837 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds