Wall clock time and date at job start Tue Mar 31 2020 10:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99932 * 2 1 4 4 O 1.42901 * 109.46909 * 135.00595 * 3 2 1 5 5 C 1.35984 * 117.00210 * 180.02562 * 4 3 2 6 6 C 1.38699 * 120.00349 * 179.97438 * 5 4 3 7 7 C 1.38135 * 119.99829 * 180.02562 * 6 5 4 8 8 C 1.38694 * 120.00329 * 359.97438 * 7 6 5 9 9 O 1.35985 * 119.99942 * 179.97438 * 8 7 6 10 10 C 1.42894 * 116.99717 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47114 * 180.02562 * 10 9 8 12 12 C 1.38633 * 119.74675 * 269.72870 * 11 10 9 13 13 C 1.37620 * 120.24615 * 179.71626 * 12 11 10 14 14 C 1.40718 * 119.74411 * 0.57380 * 13 12 11 15 15 C 1.41397 * 120.24530 * 179.67786 * 14 13 12 16 16 H 1.08001 * 120.00291 * 204.40564 * 15 14 13 17 17 C 1.39947 * 119.99876 * 24.40755 * 15 14 13 18 18 N 1.30822 * 119.99799 * 17.84526 * 17 15 14 19 19 Si 1.86797 * 119.99729 * 197.84452 * 17 15 14 20 20 H 1.48498 * 109.47324 * 60.00298 * 19 17 15 21 21 H 1.48506 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47664 * 299.99955 * 19 17 15 23 23 C 1.40711 * 119.51185 * 359.70093 * 14 13 12 24 24 C 1.37618 * 119.74457 * 0.02562 * 23 14 13 25 25 C 1.38703 * 119.99780 * 0.25835 * 8 7 6 26 26 C 1.38126 * 120.00112 * 359.48643 * 25 8 7 27 27 H 1.07995 * 119.99953 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00063 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99736 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47341 * 15.00376 * 3 2 1 31 31 H 1.09003 * 109.47635 * 255.00065 * 3 2 1 32 32 H 1.08000 * 119.99811 * 359.97438 * 6 5 4 33 33 H 1.08004 * 119.99223 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47405 * 300.00059 * 10 9 8 35 35 H 1.08999 * 109.47583 * 59.99915 * 10 9 8 36 36 H 1.07995 * 119.87715 * 359.97438 * 12 11 10 37 37 H 1.07994 * 120.13119 * 180.27392 * 13 12 11 38 38 H 0.97005 * 119.99550 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.12863 * 179.97438 * 23 14 13 40 40 H 1.08009 * 119.87664 * 180.02562 * 24 23 14 41 41 H 1.08001 * 119.99599 * 179.72193 * 25 8 7 42 42 H 1.08000 * 120.00033 * 180.23437 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9096 2.3458 1.0790 6 6 4.9593 2.3519 1.9856 7 6 5.7542 3.4743 2.1143 8 6 5.5030 4.5949 1.3367 9 8 6.2853 5.7000 1.4638 10 6 5.9690 6.8178 0.6318 11 6 6.9357 7.9401 0.9094 12 6 6.6367 8.8803 1.8833 13 6 7.5148 9.9061 2.1493 14 6 8.7141 10.0052 1.4201 15 6 9.6207 11.0587 1.6799 16 1 10.3104 11.3793 0.9131 17 6 9.6244 11.6861 2.9309 18 7 9.0633 11.1010 3.9577 19 14 10.4305 13.3589 3.1344 20 1 9.7641 14.3414 2.2423 21 1 10.3001 13.8028 4.5455 22 1 11.8686 13.2621 2.7774 23 6 9.0044 9.0485 0.4300 24 6 8.1143 8.0279 0.1848 25 6 4.4504 4.5905 0.4335 26 6 3.6588 3.4664 0.3010 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3856 2.1160 0.2660 31 1 2.4755 1.4868 -0.9926 32 1 5.1546 1.4794 2.5915 33 1 6.5713 3.4791 2.8206 34 1 6.0445 6.5244 -0.4153 35 1 4.9532 7.1521 0.8430 36 1 5.7133 8.8052 2.4382 37 1 7.2820 10.6350 2.9115 38 1 9.0662 11.5358 4.8249 39 1 9.9218 9.1152 -0.1360 40 1 8.3352 7.2921 -0.5744 41 1 4.2520 5.4647 -0.1688 42 1 2.8414 3.4616 -0.4050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543149271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:52 Heat of formation + Delta-G solvation = -27.760028 kcal Electronic energy + Delta-G solvation = -23135.583310 eV Core-core repulsion = 19624.820171 eV Total energy + Delta-G solvation = -3510.763139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38008 -40.17979 -39.24641 -37.43286 -35.68522 -34.86509 -32.64520 -32.07404 -31.22765 -30.08397 -28.62995 -27.38830 -25.76685 -23.67589 -22.95870 -22.83118 -21.74163 -20.82939 -19.39839 -19.26534 -18.63884 -17.63645 -17.20564 -16.98091 -16.57179 -16.21809 -15.79662 -15.73126 -15.44216 -15.11625 -14.64904 -14.52286 -14.23305 -14.12035 -13.88735 -13.83492 -13.52673 -13.39684 -13.10955 -12.86667 -12.70812 -12.58248 -12.34090 -12.16471 -11.99353 -11.66706 -11.51977 -11.36784 -11.24952 -11.03997 -10.41334 -10.06311 -9.43601 -9.32836 -8.68476 -8.68151 -6.39927 0.26674 0.48964 0.80241 1.10961 1.15248 1.37728 1.47583 1.51451 2.18779 2.37408 2.47503 2.75186 2.87276 3.72478 3.73675 3.84712 3.95413 4.09176 4.15599 4.17234 4.18685 4.31896 4.43154 4.46023 4.49911 4.56872 4.58358 4.59589 4.90612 4.98653 5.00307 5.08307 5.11684 5.28788 5.31261 5.37964 5.40713 5.58726 5.62434 5.65340 5.71454 5.88519 6.05371 6.15593 6.32579 6.39960 6.62982 6.64564 6.88500 6.97652 8.28164 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.043789 B = 0.001964 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.274149 B =14252.737303 C =14343.720313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.080 3.920 4 O -0.326 6.326 5 C 0.078 3.922 6 C -0.114 4.114 7 C -0.128 4.128 8 C 0.078 3.922 9 O -0.335 6.335 10 C 0.133 3.867 11 C -0.228 4.228 12 C -0.083 4.083 13 C -0.195 4.195 14 C 0.085 3.915 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.821 5.821 19 Si 0.986 3.014 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.246 4.246 24 C -0.068 4.068 25 C -0.176 4.176 26 C -0.165 4.165 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.290 0.710 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.143 0.857 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.358 -16.057 -6.250 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C 0.005 3.995 4 O -0.241 6.241 5 C 0.034 3.966 6 C -0.132 4.132 7 C -0.147 4.147 8 C 0.033 3.967 9 O -0.250 6.250 10 C 0.059 3.941 11 C -0.229 4.229 12 C -0.101 4.101 13 C -0.214 4.214 14 C 0.082 3.918 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.182 4.182 18 N -0.446 5.446 19 Si 0.806 3.194 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.182 1.182 23 C -0.266 4.266 24 C -0.086 4.086 25 C -0.195 4.195 26 C -0.183 4.183 27 H 0.126 0.874 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.161 0.839 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.232 -16.184 -5.777 22.312 hybrid contribution 0.415 1.003 0.089 1.089 sum -13.818 -15.180 -5.688 21.301 Atomic orbital electron populations 1.24115 0.95022 1.03701 0.96920 1.22694 0.96162 0.97383 1.03084 1.22018 0.87564 0.97731 0.92159 1.86060 1.42865 1.35426 1.59706 1.18955 0.93228 0.86960 0.97502 1.20382 0.94325 0.98938 0.99556 1.20451 1.01965 0.91104 1.01170 1.19354 0.92303 0.88024 0.97026 1.86274 1.54240 1.22154 1.62310 1.21351 0.96977 0.82373 0.93353 1.19091 0.99616 0.99553 1.04689 1.20795 0.98305 0.94915 0.96111 1.21274 0.95077 1.01001 1.04066 1.18047 0.91766 0.91330 0.90629 1.19901 1.17844 1.15615 0.99123 0.90229 1.26845 0.94583 1.02322 0.94409 1.69882 1.35264 1.38085 1.01369 0.85200 0.79328 0.76509 0.78379 1.18298 1.19148 1.18249 1.21178 1.00901 0.98769 1.05734 1.20728 0.93038 0.96679 0.98177 1.21278 0.96629 1.00527 1.01022 1.21252 1.02388 0.92592 1.02086 0.87418 0.86021 0.86330 0.90717 0.90302 0.83115 0.84388 0.90884 0.91381 0.87612 0.87881 0.89915 0.88074 0.86445 0.83903 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 14.31 67.78 0.97 -0.50 16 2 C -0.18 -2.19 9.89 25.64 0.25 -1.94 16 3 C 0.08 1.18 5.15 71.23 0.37 1.54 16 4 O -0.33 -6.97 10.12 -93.37 -0.95 -7.91 16 5 C 0.08 1.83 6.69 22.49 0.15 1.98 16 6 C -0.11 -2.75 9.98 22.36 0.22 -2.52 16 7 C -0.13 -3.58 9.98 22.35 0.22 -3.36 16 8 C 0.08 2.41 6.69 22.49 0.15 2.56 16 9 O -0.33 -12.40 10.12 -93.38 -0.95 -13.34 16 10 C 0.13 4.59 4.85 71.24 0.35 4.94 16 11 C -0.23 -9.92 5.53 -19.67 -0.11 -10.02 16 12 C -0.08 -3.92 9.67 22.22 0.21 -3.71 16 13 C -0.19 -10.44 8.70 22.73 0.20 -10.24 16 14 C 0.08 4.65 5.57 -21.29 -0.12 4.53 16 15 C -0.50 -26.89 9.05 23.46 0.21 -26.68 16 16 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 17 C 0.03 1.72 5.14 85.26 0.44 2.16 16 18 N -0.82 -43.31 10.95 21.83 0.24 -43.07 16 19 Si 0.99 37.93 29.59 68.60 2.03 39.96 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.25 -12.28 9.80 22.73 0.22 -12.06 16 24 C -0.07 -3.03 9.67 22.22 0.21 -2.81 16 25 C -0.18 -4.50 9.03 22.35 0.20 -4.30 16 26 C -0.16 -3.60 9.03 22.36 0.20 -3.40 16 27 H 0.11 0.80 7.90 -2.91 -0.02 0.77 16 28 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 29 H 0.12 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.07 0.95 7.38 -2.39 -0.02 0.93 16 31 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.07 2.18 7.61 -2.38 -0.02 2.16 16 35 H 0.07 2.10 7.59 -2.39 -0.02 2.08 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 37 H 0.10 5.75 6.15 -2.91 -0.02 5.73 16 38 H 0.29 13.81 8.30 -92.70 -0.77 13.04 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.14 3.21 6.29 -2.91 -0.02 3.19 16 42 H 0.15 2.40 6.29 -2.91 -0.02 2.38 16 Total: -1.00 -63.02 360.33 5.75 -57.27 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 1.01 Total: 30.91 kcal Atomic # 6 Polarization: -68.17 SS G_CDS: 4.36 Total: -63.81 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.24 Total: -43.07 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.89 Total: -21.25 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -63.02 5.75 -57.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543149271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.508 kcal (2) G-P(sol) polarization free energy of solvation -63.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds