Wall clock time and date at job start Tue Mar 31 2020 10:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47219 * 2 1 4 4 H 1.09000 * 109.46857 * 54.99599 * 3 2 1 5 5 O 1.45198 * 109.46822 * 295.00112 * 3 2 1 6 6 C 1.34806 * 117.00457 * 90.00369 * 5 3 2 7 7 O 1.21535 * 119.99452 * 359.97438 * 6 5 3 8 8 C 1.47284 * 120.00371 * 179.97438 * 6 5 3 9 9 C 1.39289 * 120.28671 * 5.51044 * 8 6 5 10 10 C 1.38197 * 120.08696 * 179.72438 * 9 8 6 11 11 C 1.38843 * 120.68333 * 0.30278 * 10 9 8 12 12 C 1.37601 * 120.57984 * 359.97438 * 11 10 9 13 13 C 1.40709 * 119.88774 * 359.97438 * 12 11 10 14 14 C 1.40857 * 120.32935 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99854 * 213.32159 * 14 13 12 16 16 C 1.40296 * 120.00340 * 33.32468 * 14 13 12 17 17 N 1.30612 * 119.99738 * 8.75075 * 16 14 13 18 18 Si 1.86792 * 120.00136 * 188.75385 * 16 14 13 19 19 H 1.48504 * 109.47298 * 90.00035 * 18 16 14 20 20 H 1.48502 * 109.47152 * 209.99503 * 18 16 14 21 21 H 1.48502 * 109.47282 * 329.99941 * 18 16 14 22 22 C 1.50693 * 109.47028 * 175.00055 * 3 2 1 23 23 C 1.38231 * 120.00305 * 84.72462 * 22 3 2 24 24 C 1.38236 * 120.00187 * 179.80674 * 23 22 3 25 25 C 1.38236 * 120.00049 * 0.39911 * 24 23 22 26 26 C 1.38237 * 119.99723 * 359.85693 * 25 24 23 27 27 C 1.38231 * 120.00277 * 359.95393 * 26 25 24 28 28 H 1.08999 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47060 * 299.99991 * 1 2 3 30 30 H 1.08998 * 109.47116 * 59.99973 * 1 2 3 31 31 H 1.08997 * 109.47164 * 239.99677 * 2 1 3 32 32 H 1.09006 * 109.46919 * 119.99807 * 2 1 3 33 33 H 1.08006 * 119.95799 * 0.02562 * 9 8 6 34 34 H 1.08000 * 119.66206 * 180.27471 * 10 9 8 35 35 H 1.07998 * 119.70967 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.05645 * 180.02562 * 12 11 10 37 37 H 0.97006 * 120.00162 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99603 * 0.02562 * 23 22 3 39 39 H 1.08001 * 119.99675 * 180.23295 * 24 23 22 40 40 H 1.07996 * 119.99836 * 179.82869 * 25 24 23 41 41 H 1.08000 * 119.99977 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00365 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6559 2.0916 -1.2407 6 6 0.4677 2.7282 -1.2561 7 8 -0.2283 2.7398 -0.2598 8 6 0.0130 3.4095 -2.4801 9 6 0.7495 3.3041 -3.6576 10 6 0.3160 3.9404 -4.8052 11 6 -0.8497 4.6947 -4.7999 12 6 -1.5957 4.8221 -3.6507 13 6 -1.1773 4.1836 -2.4687 14 6 -1.9342 4.3074 -1.2872 15 1 -1.4389 4.3209 -0.3276 16 6 -3.3314 4.4130 -1.3570 17 7 -3.9444 4.2260 -2.4951 18 14 -4.3150 4.8210 0.1777 19 1 -4.4582 6.2944 0.2967 20 1 -5.6603 4.1991 0.0834 21 1 -3.6087 4.2942 1.3730 22 6 3.5419 1.4442 0.1238 23 6 4.3286 1.3004 -1.0037 24 6 5.7063 1.3060 -0.8906 25 6 6.2973 1.4472 0.3511 26 6 5.5106 1.5857 1.4793 27 6 4.1329 1.5840 1.3657 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6581 2.7204 -3.6751 34 1 0.8901 3.8505 -5.7156 35 1 -1.1737 5.1856 -5.7056 36 1 -2.5013 5.4105 -3.6562 37 1 -4.9106 4.2986 -2.5433 38 1 3.8668 1.1872 -1.9734 39 1 6.3209 1.1974 -1.7720 40 1 7.3736 1.4488 0.4398 41 1 5.9723 1.6956 2.4494 42 1 3.5183 1.6918 2.2471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733427895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:44 Heat of formation + Delta-G solvation = -52.199219 kcal Electronic energy + Delta-G solvation = -25162.734248 eV Core-core repulsion = 21650.911347 eV Total energy + Delta-G solvation = -3511.822902 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.96757 -38.85666 -37.32613 -35.52117 -33.84418 -33.33639 -30.96010 -30.85580 -30.07405 -29.59487 -26.24652 -25.43964 -22.94204 -22.48558 -22.04136 -21.11639 -20.38295 -19.46929 -17.53951 -16.95937 -16.76993 -15.74652 -15.53600 -15.19327 -15.01424 -14.56461 -14.24698 -13.78624 -13.65052 -13.35900 -13.25506 -12.95561 -12.84717 -12.64882 -12.25014 -11.93814 -11.73740 -11.63538 -11.47568 -11.20604 -11.13741 -10.99770 -10.77544 -10.69127 -10.61264 -10.44216 -10.15455 -9.78068 -9.72795 -9.36047 -8.89838 -8.76073 -8.67923 -7.65811 -7.44897 -6.89374 -4.50494 1.32567 1.43186 2.20840 2.77885 3.04989 3.11212 3.20136 3.52240 3.84021 3.89860 3.92299 4.58928 4.75009 4.93214 4.98470 5.15078 5.22998 5.34375 5.47298 5.53894 5.56182 5.61558 5.84583 5.98795 6.00625 6.09351 6.11493 6.16327 6.20461 6.33296 6.40129 6.46149 6.52388 6.53473 6.73402 6.77714 6.93060 7.00668 7.04753 7.13257 7.35400 7.47459 7.61515 7.89215 7.93005 8.12582 8.55802 8.70327 8.77724 9.11185 10.04600 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.004230 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.094979 B = 6617.583326 C = 7683.498244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.129 3.871 4 H 0.089 0.911 5 O -0.360 6.360 6 C 0.506 3.494 7 O -0.510 6.510 8 C -0.250 4.250 9 C -0.038 4.038 10 C -0.248 4.248 11 C -0.091 4.091 12 C -0.150 4.150 13 C 0.147 3.853 14 C -0.416 4.416 15 H 0.106 0.894 16 C 0.070 3.930 17 N -0.786 5.786 18 Si 0.916 3.084 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.257 1.257 22 C -0.079 4.079 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.111 4.111 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.284 0.716 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.615 -5.203 4.133 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.073 3.927 4 H 0.107 0.893 5 O -0.279 6.279 6 C 0.357 3.643 7 O -0.400 6.400 8 C -0.253 4.253 9 C -0.056 4.056 10 C -0.267 4.267 11 C -0.109 4.109 12 C -0.169 4.169 13 C 0.143 3.857 14 C -0.443 4.443 15 H 0.124 0.876 16 C -0.149 4.149 17 N -0.411 5.411 18 Si 0.740 3.260 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.180 1.180 22 C -0.079 4.079 23 C -0.109 4.109 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.129 4.129 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.171 -5.232 4.355 13.081 hybrid contribution -0.538 0.065 0.570 0.787 sum 10.632 -5.167 4.925 12.807 Atomic orbital electron populations 1.21836 0.94263 1.00870 1.03775 1.21901 0.97315 0.95007 1.02390 1.21270 0.89974 0.93548 0.87903 0.89288 1.86641 1.39041 1.65049 1.37159 1.21321 0.77941 0.75868 0.89191 1.90731 1.54075 1.59481 1.35757 1.18766 1.04234 1.11363 0.90924 1.20819 0.96658 0.95812 0.92321 1.20354 1.00529 1.08506 0.97337 1.20861 0.94946 0.98068 0.97072 1.21346 1.00462 1.02409 0.92651 1.17450 0.88644 0.86388 0.93191 1.20236 0.90795 1.37692 0.95612 0.87636 1.26142 0.98802 0.92151 0.97792 1.69705 1.11279 1.33495 1.26619 0.86150 0.78434 0.79381 0.82001 1.19191 1.20173 1.18019 1.19785 0.94243 1.00078 0.93809 1.21100 0.93264 0.97690 0.98875 1.21178 0.94869 1.00621 0.97523 1.21138 0.99617 1.00545 0.92873 1.21052 0.93520 1.01019 0.98583 1.20976 0.94988 1.00114 0.96812 0.93336 0.91860 0.91865 0.91334 0.91057 0.88088 0.88883 0.88908 0.86129 0.90495 0.85249 0.86076 0.86326 0.86121 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.56 37.16 0.32 -2.23 16 2 C -0.13 -1.93 5.63 -26.73 -0.15 -2.08 16 3 C 0.13 2.15 2.46 -27.89 -0.07 2.08 16 4 H 0.09 1.59 7.07 -51.93 -0.37 1.22 16 5 O -0.36 -7.17 8.24 -40.78 -0.34 -7.50 16 6 C 0.51 11.81 6.30 34.41 0.22 12.03 16 7 O -0.51 -12.64 10.77 -19.29 -0.21 -12.84 16 8 C -0.25 -6.19 5.92 -104.39 -0.62 -6.81 16 9 C -0.04 -0.84 9.60 -39.21 -0.38 -1.22 16 10 C -0.25 -5.34 10.03 -39.37 -0.39 -5.73 16 11 C -0.09 -2.03 10.01 -39.59 -0.40 -2.42 16 12 C -0.15 -3.74 8.63 -38.88 -0.34 -4.08 16 13 C 0.15 3.88 5.52 -106.53 -0.59 3.30 16 14 C -0.42 -11.09 7.71 -37.82 -0.29 -11.38 16 15 H 0.11 2.89 5.88 -52.49 -0.31 2.58 16 16 C 0.07 1.75 5.27 -17.30 -0.09 1.66 16 17 N -0.79 -19.79 11.05 55.57 0.61 -19.18 16 18 Si 0.92 19.01 29.57 -169.99 -5.03 13.99 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.08 -1.15 5.01 -104.63 -0.52 -1.68 16 23 C -0.09 -1.26 9.35 -39.58 -0.37 -1.63 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 27 C -0.11 -1.41 9.68 -39.58 -0.38 -1.79 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.12 7.79 -51.93 -0.40 0.71 16 30 H 0.06 1.28 6.06 -51.93 -0.31 0.96 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 2.02 7.61 -52.48 -0.40 1.62 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.12 3.06 6.51 -52.49 -0.34 2.72 16 37 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 38 H 0.13 1.81 7.63 -52.49 -0.40 1.41 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -28.10 350.39 -10.40 -38.50 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.48 Total: 9.05 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -5.25 Total: -27.29 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.54 Total: -20.35 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.10 -10.40 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733427895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.701 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds