Wall clock time and date at job start Tue Mar 31 2020 10:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47219 * 2 1 4 4 H 1.09000 * 109.46857 * 54.99599 * 3 2 1 5 5 O 1.45198 * 109.46822 * 295.00112 * 3 2 1 6 6 C 1.34806 * 117.00457 * 90.00369 * 5 3 2 7 7 O 1.21535 * 119.99452 * 359.97438 * 6 5 3 8 8 C 1.47284 * 120.00371 * 179.97438 * 6 5 3 9 9 C 1.39289 * 120.28671 * 5.51044 * 8 6 5 10 10 C 1.38197 * 120.08696 * 179.72438 * 9 8 6 11 11 C 1.38843 * 120.68333 * 0.30278 * 10 9 8 12 12 C 1.37601 * 120.57984 * 359.97438 * 11 10 9 13 13 C 1.40709 * 119.88774 * 359.97438 * 12 11 10 14 14 C 1.40857 * 120.32935 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99854 * 213.32159 * 14 13 12 16 16 C 1.40296 * 120.00340 * 33.32468 * 14 13 12 17 17 N 1.30612 * 119.99738 * 8.75075 * 16 14 13 18 18 Si 1.86792 * 120.00136 * 188.75385 * 16 14 13 19 19 H 1.48504 * 109.47298 * 90.00035 * 18 16 14 20 20 H 1.48502 * 109.47152 * 209.99503 * 18 16 14 21 21 H 1.48502 * 109.47282 * 329.99941 * 18 16 14 22 22 C 1.50693 * 109.47028 * 175.00055 * 3 2 1 23 23 C 1.38231 * 120.00305 * 84.72462 * 22 3 2 24 24 C 1.38236 * 120.00187 * 179.80674 * 23 22 3 25 25 C 1.38236 * 120.00049 * 0.39911 * 24 23 22 26 26 C 1.38237 * 119.99723 * 359.85693 * 25 24 23 27 27 C 1.38231 * 120.00277 * 359.95393 * 26 25 24 28 28 H 1.08999 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47060 * 299.99991 * 1 2 3 30 30 H 1.08998 * 109.47116 * 59.99973 * 1 2 3 31 31 H 1.08997 * 109.47164 * 239.99677 * 2 1 3 32 32 H 1.09006 * 109.46919 * 119.99807 * 2 1 3 33 33 H 1.08006 * 119.95799 * 0.02562 * 9 8 6 34 34 H 1.08000 * 119.66206 * 180.27471 * 10 9 8 35 35 H 1.07998 * 119.70967 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.05645 * 180.02562 * 12 11 10 37 37 H 0.97006 * 120.00162 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99603 * 0.02562 * 23 22 3 39 39 H 1.08001 * 119.99675 * 180.23295 * 24 23 22 40 40 H 1.07996 * 119.99836 * 179.82869 * 25 24 23 41 41 H 1.08000 * 119.99977 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00365 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6559 2.0916 -1.2407 6 6 0.4677 2.7282 -1.2561 7 8 -0.2283 2.7398 -0.2598 8 6 0.0130 3.4095 -2.4801 9 6 0.7495 3.3041 -3.6576 10 6 0.3160 3.9404 -4.8052 11 6 -0.8497 4.6947 -4.7999 12 6 -1.5957 4.8221 -3.6507 13 6 -1.1773 4.1836 -2.4687 14 6 -1.9342 4.3074 -1.2872 15 1 -1.4389 4.3209 -0.3276 16 6 -3.3314 4.4130 -1.3570 17 7 -3.9444 4.2260 -2.4951 18 14 -4.3150 4.8210 0.1777 19 1 -4.4582 6.2944 0.2967 20 1 -5.6603 4.1991 0.0834 21 1 -3.6087 4.2942 1.3730 22 6 3.5419 1.4442 0.1238 23 6 4.3286 1.3004 -1.0037 24 6 5.7063 1.3060 -0.8906 25 6 6.2973 1.4472 0.3511 26 6 5.5106 1.5857 1.4793 27 6 4.1329 1.5840 1.3657 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6581 2.7204 -3.6751 34 1 0.8901 3.8505 -5.7156 35 1 -1.1737 5.1856 -5.7056 36 1 -2.5013 5.4105 -3.6562 37 1 -4.9106 4.2986 -2.5433 38 1 3.8668 1.1872 -1.9734 39 1 6.3209 1.1974 -1.7720 40 1 7.3736 1.4488 0.4398 41 1 5.9723 1.6956 2.4494 42 1 3.5183 1.6918 2.2471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733427895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:44 Heat of formation + Delta-G solvation = -63.194069 kcal Electronic energy + Delta-G solvation = -25163.211021 eV Core-core repulsion = 21650.911347 eV Total energy + Delta-G solvation = -3512.299674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49262 -40.08188 -39.03551 -37.18611 -35.65934 -34.76828 -32.05789 -31.91801 -31.78241 -31.41779 -27.74073 -27.09921 -24.60040 -23.53504 -23.20463 -22.88280 -21.78147 -21.08923 -19.38872 -18.45795 -18.10068 -17.30084 -17.08897 -16.85945 -16.17847 -15.92612 -15.69225 -15.29888 -14.98485 -14.85043 -14.51107 -14.43321 -14.24373 -14.20604 -13.63731 -13.54754 -13.20261 -12.99939 -12.88381 -12.87550 -12.80850 -12.56162 -12.34315 -12.03002 -11.97606 -11.94520 -11.72168 -11.53321 -11.28440 -11.17079 -10.58261 -9.81972 -9.68691 -9.50779 -9.32421 -8.74186 -6.45686 0.34798 0.37164 0.50541 0.98645 1.33128 1.44963 1.50055 2.00329 2.08369 2.17993 2.71819 2.87020 3.56997 3.64506 3.91417 3.92440 4.12847 4.14892 4.19173 4.31005 4.40526 4.43154 4.51429 4.59021 4.66276 4.72157 4.78743 4.85523 4.90389 5.02952 5.05888 5.10316 5.18290 5.19429 5.27274 5.32651 5.50261 5.55777 5.60493 5.63948 5.77350 5.82944 6.01237 6.06587 6.10138 6.28403 6.62910 6.78350 6.87837 7.31771 8.22336 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.004230 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.094979 B = 6617.583326 C = 7683.498244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.125 3.875 4 H 0.070 0.930 5 O -0.356 6.356 6 C 0.508 3.492 7 O -0.533 6.533 8 C -0.275 4.275 9 C -0.041 4.041 10 C -0.239 4.239 11 C -0.085 4.085 12 C -0.176 4.176 13 C 0.120 3.880 14 C -0.453 4.453 15 H 0.085 0.915 16 C 0.035 3.965 17 N -0.813 5.813 18 Si 0.980 3.020 19 H -0.253 1.253 20 H -0.262 1.262 21 H -0.271 1.271 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.293 0.707 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.988 -5.882 3.971 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.070 3.930 4 H 0.088 0.912 5 O -0.275 6.275 6 C 0.359 3.641 7 O -0.425 6.425 8 C -0.277 4.277 9 C -0.059 4.059 10 C -0.258 4.258 11 C -0.103 4.103 12 C -0.195 4.195 13 C 0.117 3.883 14 C -0.481 4.481 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.438 5.438 18 Si 0.800 3.200 19 H -0.177 1.177 20 H -0.186 1.186 21 H -0.195 1.195 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.139 4.139 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.564 -5.914 4.169 15.373 hybrid contribution -1.057 0.205 0.557 1.212 sum 12.507 -5.709 4.726 14.538 Atomic orbital electron populations 1.21762 0.95932 1.01511 1.01040 1.21883 0.95590 0.94252 1.04062 1.21509 0.91953 0.93849 0.85639 0.91211 1.86587 1.37196 1.64682 1.39030 1.21216 0.78553 0.75740 0.88602 1.90707 1.55033 1.60290 1.36494 1.19145 1.04445 1.11560 0.92586 1.21123 0.97148 0.95887 0.91769 1.20812 1.00025 1.06610 0.98336 1.21242 0.94536 0.97314 0.97217 1.21331 1.01098 1.03507 0.93556 1.17804 0.89587 0.87045 0.93893 1.20210 0.92085 1.40745 0.95020 0.89700 1.26822 0.98997 0.91582 1.00709 1.69722 1.11968 1.34110 1.28050 0.85235 0.77234 0.79809 0.77690 1.17721 1.18564 1.19519 1.19675 0.92524 1.02672 0.95189 1.21138 0.94503 0.98960 0.98160 1.21468 0.94007 0.99745 0.99103 1.21568 1.01337 0.98586 0.92138 1.21425 0.92680 0.99598 1.00235 1.21163 0.96223 1.00255 0.96293 0.90918 0.93376 0.95758 0.90586 0.88219 0.85791 0.84970 0.85680 0.87356 0.89632 0.86257 0.83791 0.83081 0.83246 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 8.56 71.98 0.62 -4.46 16 2 C -0.12 -3.60 5.63 30.60 0.17 -3.43 16 3 C 0.13 4.30 2.46 29.85 0.07 4.37 16 4 H 0.07 2.63 7.07 -2.39 -0.02 2.62 16 5 O -0.36 -14.67 8.24 -57.18 -0.47 -15.14 16 6 C 0.51 24.92 6.30 70.20 0.44 25.36 16 7 O -0.53 -28.23 10.77 19.72 0.21 -28.01 16 8 C -0.27 -14.07 5.92 -19.71 -0.12 -14.19 16 9 C -0.04 -1.81 9.60 22.51 0.22 -1.59 16 10 C -0.24 -9.78 10.03 22.40 0.22 -9.56 16 11 C -0.08 -3.69 10.01 22.26 0.22 -3.47 16 12 C -0.18 -9.02 8.63 22.72 0.20 -8.83 16 13 C 0.12 6.64 5.52 -21.10 -0.12 6.52 16 14 C -0.45 -25.60 7.71 23.41 0.18 -25.42 16 15 H 0.09 5.01 5.88 -2.91 -0.02 4.99 16 16 C 0.04 1.83 5.27 85.37 0.45 2.28 16 17 N -0.81 -42.33 11.05 21.88 0.24 -42.09 16 18 Si 0.98 40.40 29.57 68.60 2.03 42.42 16 19 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C -0.10 -2.88 5.01 -19.87 -0.10 -2.98 16 23 C -0.11 -2.91 9.35 22.27 0.21 -2.70 16 24 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 25 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 26 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 27 C -0.12 -2.91 9.68 22.27 0.22 -2.70 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.79 7.79 -2.38 -0.02 1.77 16 30 H 0.02 1.01 6.06 -2.39 -0.01 1.00 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.12 4.80 7.61 -2.91 -0.02 4.78 16 34 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.11 5.72 6.51 -2.91 -0.02 5.70 16 37 H 0.29 13.67 8.29 -92.70 -0.77 12.90 16 38 H 0.12 3.30 7.63 -2.91 -0.02 3.28 16 39 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -64.66 350.39 6.59 -58.07 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 1.02 Total: 31.86 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 3.56 Total: -47.11 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.24 Total: -42.09 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.26 Total: -43.16 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -64.66 6.59 -58.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733427895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.123 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds