Wall clock time and date at job start Tue Mar 31 2020 09:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38239 * 120.00167 * 2 1 4 4 C 1.38224 * 120.00095 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00215 * 0.25712 * 4 3 2 6 6 C 1.50697 * 120.00255 * 179.72986 * 5 4 3 7 7 C 1.52993 * 109.47626 * 89.99603 * 6 5 4 8 8 O 1.45202 * 109.47317 * 180.02562 * 7 6 5 9 9 C 1.34777 * 117.00168 * 180.02562 * 8 7 6 10 10 O 1.21512 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.47507 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.40061 * 119.89691 * 359.72415 * 11 9 8 13 13 C 1.36309 * 120.10095 * 179.75782 * 12 11 9 14 14 C 1.40908 * 119.89331 * 0.51530 * 13 12 11 15 15 C 1.41088 * 120.09738 * 179.71570 * 14 13 12 16 16 H 1.07998 * 119.99874 * 204.65798 * 15 14 13 17 17 C 1.40246 * 119.99652 * 24.66328 * 15 14 13 18 18 N 1.30631 * 120.00612 * 17.86429 * 17 15 14 19 19 Si 1.86808 * 119.99545 * 197.86044 * 17 15 14 20 20 H 1.48503 * 109.47058 * 90.00544 * 19 17 15 21 21 H 1.48503 * 109.46714 * 209.99805 * 19 17 15 22 22 H 1.48494 * 109.47383 * 330.00224 * 19 17 15 23 23 C 1.40899 * 119.80440 * 359.73919 * 14 13 12 24 24 C 1.36305 * 119.89554 * 0.02562 * 23 14 13 25 25 C 1.38238 * 119.99786 * 359.48664 * 5 4 3 26 26 C 1.38227 * 119.99813 * 0.48900 * 25 5 4 27 27 H 1.09001 * 109.47346 * 89.99855 * 1 2 3 28 28 H 1.09000 * 109.47306 * 209.99926 * 1 2 3 29 29 H 1.09003 * 109.47615 * 329.99666 * 1 2 3 30 30 H 1.07997 * 119.99602 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.99886 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47124 * 210.00021 * 6 5 4 33 33 H 1.08999 * 109.47157 * 329.99277 * 6 5 4 34 34 H 1.09002 * 109.47279 * 299.99865 * 7 6 5 35 35 H 1.09001 * 109.47148 * 60.00194 * 7 6 5 36 36 H 1.07996 * 119.95349 * 0.02562 * 12 11 9 37 37 H 1.07998 * 120.05392 * 180.23281 * 13 12 11 38 38 H 0.96998 * 120.00529 * 179.97438 * 18 17 15 39 39 H 1.07990 * 120.05079 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.94838 * 179.97438 * 24 23 14 41 41 H 1.08003 * 120.00171 * 180.25602 * 25 5 4 42 42 H 1.08008 * 119.99990 * 179.76486 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0064 6 6 5.7786 0.0000 -0.0132 7 6 6.2951 -0.0033 1.4269 8 8 7.7471 -0.0027 1.4203 9 6 8.3645 -0.0059 2.6184 10 8 7.7073 -0.0086 3.6405 11 6 9.8378 -0.0061 2.6890 12 6 10.5932 -0.0088 1.5095 13 6 11.9550 -0.0040 1.5699 14 6 12.6025 -0.0073 2.8214 15 6 14.0118 -0.0084 2.8888 16 1 14.5102 -0.4009 3.7628 17 6 14.7652 0.5004 1.8210 18 7 14.2016 1.2789 0.9362 19 14 16.5750 0.0649 1.6639 20 1 16.7183 -1.1700 0.8515 21 1 17.2967 1.1803 1.0004 22 1 17.1487 -0.1619 3.0146 23 6 11.8384 -0.0100 4.0052 24 6 10.4772 -0.0099 3.9352 25 6 3.5805 -1.1972 -0.0011 26 6 2.1982 -1.1972 0.0000 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6581 2.1324 -0.0004 31 1 4.1204 2.1324 -0.0010 32 1 6.1396 -0.8888 -0.5307 33 1 6.1396 0.8911 -0.5266 34 1 5.9342 0.8855 1.9444 35 1 5.9341 -0.8945 1.9404 36 1 10.0961 -0.0103 0.5508 37 1 12.5367 -0.0022 0.6599 38 1 14.7229 1.6311 0.1979 39 1 12.3306 -0.0129 4.9664 40 1 9.8907 -0.0124 4.8421 41 1 4.1205 -2.1325 -0.0015 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758691173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:35 Heat of formation + Delta-G solvation = -68.992097 kcal Electronic energy + Delta-G solvation = -23176.330638 eV Core-core repulsion = 19663.779543 eV Total energy + Delta-G solvation = -3512.551095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.81789 -39.37575 -37.47192 -35.84904 -34.26404 -33.95084 -31.10219 -30.85655 -30.13593 -29.51021 -26.84150 -25.87479 -23.25703 -22.90129 -22.03466 -20.96013 -20.71882 -19.91664 -17.57084 -16.98811 -16.17165 -16.15908 -16.03974 -15.41527 -15.34350 -15.19030 -14.14152 -14.02165 -13.64259 -13.63931 -13.42240 -13.31741 -12.94627 -12.84533 -12.52475 -12.32516 -12.12100 -11.91133 -11.64637 -11.44228 -11.40171 -11.30918 -11.19818 -11.08558 -10.97709 -10.70304 -10.12473 -10.06339 -9.61972 -9.45430 -9.37665 -9.09411 -8.67524 -7.76198 -7.64617 -7.10404 -4.68458 1.11324 1.23404 2.05744 2.86434 2.92333 2.95200 3.02380 3.31250 3.63881 3.64931 3.70084 4.46197 4.59810 4.61482 4.83325 4.85380 4.92909 5.18157 5.18679 5.29113 5.31685 5.48157 5.49216 5.51402 5.54794 5.76480 5.77084 5.95199 5.97863 6.12379 6.20708 6.24841 6.26831 6.39790 6.48949 6.73745 6.79179 6.83587 6.98370 7.04292 7.13163 7.40817 7.66873 7.77851 7.83115 7.99984 8.34657 8.55769 8.68823 8.75957 9.80877 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.002074 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.143399 B =13497.982879 C =13939.932861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.080 4.080 7 C 0.075 3.925 8 O -0.361 6.361 9 C 0.515 3.485 10 O -0.553 6.553 11 C -0.274 4.274 12 C -0.043 4.043 13 C -0.185 4.185 14 C 0.131 3.869 15 C -0.435 4.435 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.764 5.764 19 Si 0.916 3.084 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.239 4.239 24 C -0.018 4.018 25 C -0.109 4.109 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 -1.576 -5.932 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.117 4.117 7 C 0.001 3.999 8 O -0.279 6.279 9 C 0.367 3.633 10 O -0.447 6.447 11 C -0.277 4.277 12 C -0.062 4.062 13 C -0.204 4.204 14 C 0.127 3.873 15 C -0.462 4.462 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.386 5.386 19 Si 0.739 3.261 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.258 4.258 24 C -0.037 4.037 25 C -0.127 4.127 26 C -0.138 4.138 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.715 -1.416 -5.874 17.774 hybrid contribution 0.627 -0.029 -0.060 0.630 sum -16.089 -1.445 -5.934 17.209 Atomic orbital electron populations 1.20784 0.91305 1.02739 1.02208 1.19938 0.96043 0.93298 0.99978 1.21017 0.94112 0.97528 1.01132 1.21107 0.94194 0.97754 0.99623 1.19713 0.94862 0.93399 1.00429 1.20506 0.90433 1.04631 0.96168 1.22754 0.78440 1.02230 0.96507 1.86566 1.21157 1.85496 1.34701 1.21571 0.89674 0.71944 0.80084 1.90697 1.67630 1.50571 1.35818 1.18221 0.86345 1.28104 0.95021 1.20646 0.94309 0.95532 0.95664 1.21017 0.92763 1.08278 0.98358 1.17859 0.93280 0.84856 0.91282 1.19931 0.91493 1.32631 1.02126 0.89460 1.26160 1.02104 0.92455 0.94251 1.69738 1.39257 1.19524 1.10120 0.86165 0.80503 0.79347 0.80040 1.18816 1.19918 1.18192 1.20680 0.92724 1.14945 0.97482 1.20356 0.94310 0.94062 0.94976 1.21103 0.94189 0.97734 0.99669 1.21017 0.94110 0.97521 1.01156 0.91270 0.91599 0.91594 0.86086 0.85795 0.89795 0.89770 0.91786 0.91791 0.88014 0.86033 0.89987 0.88068 0.87965 0.85813 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.16 9.70 -39.59 -0.38 -1.54 16 4 C -0.11 -1.16 9.70 -39.59 -0.38 -1.55 16 5 C -0.08 -0.96 5.13 -104.62 -0.54 -1.49 16 6 C -0.08 -0.98 5.72 -27.89 -0.16 -1.14 16 7 C 0.08 1.18 5.46 37.15 0.20 1.38 16 8 O -0.36 -7.04 9.45 -40.70 -0.38 -7.42 16 9 C 0.51 11.60 7.89 34.51 0.27 11.88 16 10 O -0.55 -13.26 16.11 -19.27 -0.31 -13.57 16 11 C -0.27 -6.52 5.89 -104.75 -0.62 -7.13 16 12 C -0.04 -1.00 9.55 -39.59 -0.38 -1.38 16 13 C -0.19 -4.59 8.63 -39.27 -0.34 -4.93 16 14 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 15 C -0.43 -10.63 9.04 -37.75 -0.34 -10.98 16 16 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 17 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 18 N -0.76 -18.10 10.95 55.56 0.61 -17.49 16 19 Si 0.92 16.93 29.60 -169.99 -5.03 11.90 16 20 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 24 C -0.02 -0.44 9.52 -39.59 -0.38 -0.81 16 25 C -0.11 -1.16 9.70 -39.59 -0.38 -1.54 16 26 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 33 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 2.17 7.59 -52.49 -0.40 1.77 16 37 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 38 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -28.11 364.04 -10.50 -38.61 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.73 Total: 6.95 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -5.13 Total: -24.46 kcal Atomic # 7 Polarization: -18.10 SS G_CDS: 0.61 Total: -17.49 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.70 Total: -20.99 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.11 -10.50 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758691173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.383 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds