Wall clock time and date at job start Tue Mar 31 2020 09:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38239 * 120.00167 * 2 1 4 4 C 1.38224 * 120.00095 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00215 * 0.25712 * 4 3 2 6 6 C 1.50697 * 120.00255 * 179.72986 * 5 4 3 7 7 C 1.52993 * 109.47626 * 89.99603 * 6 5 4 8 8 O 1.45202 * 109.47317 * 180.02562 * 7 6 5 9 9 C 1.34777 * 117.00168 * 180.02562 * 8 7 6 10 10 O 1.21512 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.47507 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.40061 * 119.89691 * 359.72415 * 11 9 8 13 13 C 1.36309 * 120.10095 * 179.75782 * 12 11 9 14 14 C 1.40908 * 119.89331 * 0.51530 * 13 12 11 15 15 C 1.41088 * 120.09738 * 179.71570 * 14 13 12 16 16 H 1.07998 * 119.99874 * 204.65798 * 15 14 13 17 17 C 1.40246 * 119.99652 * 24.66328 * 15 14 13 18 18 N 1.30631 * 120.00612 * 17.86429 * 17 15 14 19 19 Si 1.86808 * 119.99545 * 197.86044 * 17 15 14 20 20 H 1.48503 * 109.47058 * 90.00544 * 19 17 15 21 21 H 1.48503 * 109.46714 * 209.99805 * 19 17 15 22 22 H 1.48494 * 109.47383 * 330.00224 * 19 17 15 23 23 C 1.40899 * 119.80440 * 359.73919 * 14 13 12 24 24 C 1.36305 * 119.89554 * 0.02562 * 23 14 13 25 25 C 1.38238 * 119.99786 * 359.48664 * 5 4 3 26 26 C 1.38227 * 119.99813 * 0.48900 * 25 5 4 27 27 H 1.09001 * 109.47346 * 89.99855 * 1 2 3 28 28 H 1.09000 * 109.47306 * 209.99926 * 1 2 3 29 29 H 1.09003 * 109.47615 * 329.99666 * 1 2 3 30 30 H 1.07997 * 119.99602 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.99886 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47124 * 210.00021 * 6 5 4 33 33 H 1.08999 * 109.47157 * 329.99277 * 6 5 4 34 34 H 1.09002 * 109.47279 * 299.99865 * 7 6 5 35 35 H 1.09001 * 109.47148 * 60.00194 * 7 6 5 36 36 H 1.07996 * 119.95349 * 0.02562 * 12 11 9 37 37 H 1.07998 * 120.05392 * 180.23281 * 13 12 11 38 38 H 0.96998 * 120.00529 * 179.97438 * 18 17 15 39 39 H 1.07990 * 120.05079 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.94838 * 179.97438 * 24 23 14 41 41 H 1.08003 * 120.00171 * 180.25602 * 25 5 4 42 42 H 1.08008 * 119.99990 * 179.76486 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0064 6 6 5.7786 0.0000 -0.0132 7 6 6.2951 -0.0033 1.4269 8 8 7.7471 -0.0027 1.4203 9 6 8.3645 -0.0059 2.6184 10 8 7.7073 -0.0086 3.6405 11 6 9.8378 -0.0061 2.6890 12 6 10.5932 -0.0088 1.5095 13 6 11.9550 -0.0040 1.5699 14 6 12.6025 -0.0073 2.8214 15 6 14.0118 -0.0084 2.8888 16 1 14.5102 -0.4009 3.7628 17 6 14.7652 0.5004 1.8210 18 7 14.2016 1.2789 0.9362 19 14 16.5750 0.0649 1.6639 20 1 16.7183 -1.1700 0.8515 21 1 17.2967 1.1803 1.0004 22 1 17.1487 -0.1619 3.0146 23 6 11.8384 -0.0100 4.0052 24 6 10.4772 -0.0099 3.9352 25 6 3.5805 -1.1972 -0.0011 26 6 2.1982 -1.1972 0.0000 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6581 2.1324 -0.0004 31 1 4.1204 2.1324 -0.0010 32 1 6.1396 -0.8888 -0.5307 33 1 6.1396 0.8911 -0.5266 34 1 5.9342 0.8855 1.9444 35 1 5.9341 -0.8945 1.9404 36 1 10.0961 -0.0103 0.5508 37 1 12.5367 -0.0022 0.6599 38 1 14.7229 1.6311 0.1979 39 1 12.3306 -0.0129 4.9664 40 1 9.8907 -0.0124 4.8421 41 1 4.1205 -2.1325 -0.0015 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758691173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:34 Heat of formation + Delta-G solvation = -78.795013 kcal Electronic energy + Delta-G solvation = -23176.755724 eV Core-core repulsion = 19663.779543 eV Total energy + Delta-G solvation = -3512.976182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29654 -40.37245 -39.26832 -37.45212 -35.75462 -35.21002 -32.32334 -31.84661 -31.41773 -31.36927 -28.23061 -27.15699 -24.56270 -23.65170 -23.52066 -22.81629 -21.72915 -21.46986 -19.40703 -18.62960 -17.86150 -17.50201 -17.08983 -16.86303 -16.35096 -15.95257 -15.78616 -15.34221 -15.10775 -14.82539 -14.64161 -14.39559 -14.29506 -13.98230 -13.75988 -13.73669 -13.35268 -13.18101 -13.09122 -12.88544 -12.73201 -12.59714 -12.47632 -12.36876 -12.02874 -11.86803 -11.80851 -11.48273 -11.42595 -11.25107 -11.13547 -9.85559 -9.63824 -9.53839 -9.45090 -8.85090 -6.55557 0.23254 0.32501 0.47412 1.13128 1.37008 1.41980 1.54912 1.87294 1.88404 2.15245 2.67557 2.80275 3.61979 3.78728 3.80173 4.01034 4.02704 4.08748 4.13882 4.20249 4.35180 4.39559 4.41433 4.44743 4.56631 4.75201 4.83754 4.87635 4.87862 4.92555 4.98307 5.00324 5.11512 5.18346 5.22501 5.28662 5.44318 5.48652 5.55527 5.67161 5.68719 5.81199 5.90951 5.96103 6.10013 6.14603 6.48803 6.69839 6.81708 7.00885 8.09681 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.002074 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.143399 B =13497.982879 C =13939.932861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.129 4.129 4 C -0.121 4.121 5 C -0.102 4.102 6 C -0.068 4.068 7 C 0.073 3.927 8 O -0.361 6.361 9 C 0.519 3.481 10 O -0.572 6.572 11 C -0.292 4.292 12 C -0.039 4.039 13 C -0.203 4.203 14 C 0.103 3.897 15 C -0.458 4.458 16 H 0.093 0.907 17 C 0.035 3.965 18 N -0.790 5.790 19 Si 0.992 3.008 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.254 1.254 23 C -0.249 4.249 24 C -0.024 4.024 25 C -0.120 4.120 26 C -0.128 4.128 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.300 0.700 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -1.750 -6.707 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.102 4.102 6 C -0.105 4.105 7 C -0.001 4.001 8 O -0.278 6.278 9 C 0.372 3.628 10 O -0.468 6.468 11 C -0.294 4.294 12 C -0.058 4.058 13 C -0.222 4.222 14 C 0.100 3.900 15 C -0.484 4.484 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.413 5.413 19 Si 0.811 3.189 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.177 1.177 23 C -0.268 4.268 24 C -0.043 4.043 25 C -0.138 4.138 26 C -0.146 4.146 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.137 -1.584 -6.662 18.455 hybrid contribution 0.634 0.057 0.149 0.654 sum -16.503 -1.528 -6.512 17.807 Atomic orbital electron populations 1.20837 0.89313 1.03622 1.03149 1.20334 0.97631 0.93031 0.98646 1.21305 0.93866 0.98676 1.00794 1.21302 0.94968 0.97828 0.99772 1.19690 0.94150 0.94171 1.02229 1.20423 0.91225 1.05187 0.93708 1.23061 0.76024 1.01988 0.99033 1.86536 1.23490 1.84797 1.32992 1.21363 0.89343 0.71523 0.80615 1.90676 1.67981 1.51511 1.36627 1.18449 0.87399 1.28392 0.95178 1.20784 0.93930 0.94636 0.96419 1.21027 0.93312 1.09742 0.98104 1.18218 0.94266 0.85653 0.91867 1.20253 0.91574 1.33180 1.03371 0.88862 1.27049 1.06608 0.91618 0.93244 1.69760 1.41369 1.19622 1.10543 0.85039 0.74467 0.79232 0.80149 1.18319 1.18900 1.17739 1.20858 0.92967 1.15175 0.97821 1.20516 0.94401 0.93867 0.95484 1.21305 0.94950 0.97814 0.99719 1.21313 0.93877 0.98663 1.00761 0.90183 0.90728 0.90766 0.84247 0.85218 0.89162 0.89317 0.92128 0.91948 0.86341 0.86702 0.88862 0.86792 0.87155 0.85094 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.23 0.71 -0.51 16 2 C -0.10 -1.62 5.88 -19.87 -0.12 -1.74 16 3 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 4 C -0.12 -2.48 9.70 22.27 0.22 -2.27 16 5 C -0.10 -2.27 5.13 -19.87 -0.10 -2.37 16 6 C -0.07 -1.63 5.72 29.84 0.17 -1.46 16 7 C 0.07 2.26 5.46 71.98 0.39 2.65 16 8 O -0.36 -14.01 9.45 -56.88 -0.54 -14.55 16 9 C 0.52 23.50 7.89 70.27 0.55 24.05 16 10 O -0.57 -27.58 16.11 19.79 0.32 -27.26 16 11 C -0.29 -14.00 5.89 -19.95 -0.12 -14.11 16 12 C -0.04 -1.84 9.55 22.26 0.21 -1.63 16 13 C -0.20 -10.24 8.63 22.47 0.19 -10.05 16 14 C 0.10 5.32 5.58 -21.27 -0.12 5.20 16 15 C -0.46 -22.46 9.04 23.46 0.21 -22.25 16 16 H 0.09 4.32 7.91 -2.91 -0.02 4.29 16 17 C 0.04 1.59 5.14 85.36 0.44 2.03 16 18 N -0.79 -37.30 10.95 21.87 0.24 -37.06 16 19 Si 0.99 33.68 29.60 68.60 2.03 35.71 16 20 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 21 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 22 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 23 C -0.25 -12.11 9.73 22.47 0.22 -11.89 16 24 C -0.02 -1.15 9.52 22.26 0.21 -0.94 16 25 C -0.12 -2.43 9.70 22.27 0.22 -2.22 16 26 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.12 5.06 7.59 -2.91 -0.02 5.04 16 37 H 0.12 5.86 6.16 -2.91 -0.02 5.84 16 38 H 0.30 12.52 8.29 -92.71 -0.77 11.75 16 39 H 0.11 5.08 8.06 -2.92 -0.02 5.06 16 40 H 0.11 5.00 7.63 -2.91 -0.02 4.98 16 41 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -59.77 364.04 6.79 -52.98 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 1.01 Total: 31.80 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 3.73 Total: -41.62 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.24 Total: -37.06 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.22 Total: -41.80 kcal Atomic # 14 Polarization: 33.68 SS G_CDS: 2.03 Total: 35.71 kcal Total: -59.77 6.79 -52.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758691173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.817 kcal (2) G-P(sol) polarization free energy of solvation -59.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds