Wall clock time and date at job start Tue Mar 31 2020 09:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37942 * 120.07872 * 2 1 4 4 C 1.38361 * 120.15247 * 179.72270 * 3 2 1 5 5 C 1.38371 * 120.30566 * 0.25904 * 4 3 2 6 6 C 1.37940 * 120.14600 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.07409 * 180.02562 * 6 5 4 8 8 C 1.39628 * 119.84985 * 359.97438 * 6 5 4 9 9 C 1.47731 * 120.15031 * 179.97438 * 8 6 5 10 10 O 1.21476 * 119.99416 * 90.00158 * 9 8 6 11 11 O 1.34712 * 120.00254 * 270.00538 * 9 8 6 12 12 C 1.45198 * 116.99676 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46980 * 179.97438 * 12 11 9 14 14 C 1.38637 * 119.74577 * 269.72823 * 13 12 11 15 15 C 1.37614 * 120.24726 * 179.72127 * 14 13 12 16 16 C 1.40718 * 119.74765 * 0.56543 * 15 14 13 17 17 C 1.41389 * 120.24877 * 179.68438 * 16 15 14 18 18 H 1.07999 * 120.00105 * 155.30968 * 17 16 15 19 19 C 1.39948 * 119.99980 * 335.30792 * 17 16 15 20 20 N 1.30817 * 119.99991 * 342.23761 * 19 17 16 21 21 Si 1.86797 * 120.00047 * 162.23332 * 19 17 16 22 22 H 1.48494 * 109.47391 * 94.66466 * 21 19 17 23 23 H 1.48506 * 109.47205 * 214.67046 * 21 19 17 24 24 H 1.48508 * 109.47262 * 334.66557 * 21 19 17 25 25 C 1.40722 * 119.50563 * 359.70626 * 16 15 14 26 26 C 1.37618 * 119.74656 * 359.97438 * 25 16 15 27 27 H 1.08994 * 109.47559 * 89.99914 * 1 2 3 28 28 H 1.09004 * 109.47101 * 209.99381 * 1 2 3 29 29 H 1.08995 * 109.46863 * 329.99236 * 1 2 3 30 30 H 1.08001 * 119.92020 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.84746 * 180.23466 * 4 3 2 32 32 H 1.08003 * 119.92499 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.47045 * 90.00308 * 7 6 5 34 34 H 1.09001 * 109.47358 * 210.00018 * 7 6 5 35 35 H 1.08997 * 109.47226 * 330.00134 * 7 6 5 36 36 H 1.08999 * 109.47154 * 299.99013 * 12 11 9 37 37 H 1.08994 * 109.47845 * 59.99772 * 12 11 9 38 38 H 1.08000 * 119.87883 * 359.96976 * 14 13 12 39 39 H 1.08008 * 120.13136 * 180.27320 * 15 14 13 40 40 H 0.97009 * 120.00492 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.12467 * 179.97438 * 25 16 15 42 42 H 1.07997 * 119.87033 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1937 0.0000 4 6 3.5820 1.1954 0.0058 5 6 4.2817 0.0017 0.0062 6 6 3.6030 -1.1991 0.0014 7 6 4.3668 -2.4983 0.0024 8 6 2.2068 -1.2083 -0.0034 9 6 1.4732 -2.4906 -0.0091 10 8 1.1680 -3.0203 1.0406 11 8 1.1428 -3.0723 -1.1784 12 6 0.4220 -4.3308 -1.1079 13 6 0.1403 -4.8271 -2.5026 14 6 -1.0355 -4.4601 -3.1390 15 6 -1.3006 -4.9027 -4.4148 16 6 -0.3784 -5.7405 -5.0689 17 6 -0.6432 -6.2068 -6.3771 18 1 0.1730 -6.4936 -7.0237 19 6 -1.9628 -6.2969 -6.8342 20 7 -2.9529 -6.2919 -5.9792 21 14 -2.3105 -6.4240 -8.6651 22 1 -2.4486 -7.8529 -9.0448 23 1 -3.5702 -5.7038 -8.9810 24 1 -1.1889 -5.8160 -9.4254 25 6 0.8091 -6.1112 -4.4110 26 6 1.0564 -5.6513 -3.1377 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6583 2.1290 0.0004 31 1 4.1182 2.1329 0.0096 32 1 5.3617 0.0103 0.0112 33 1 4.5466 -2.8132 1.0304 34 1 3.7859 -3.2617 -0.5151 35 1 5.3203 -2.3596 -0.5071 36 1 1.0255 -5.0659 -0.5754 37 1 -0.5192 -4.1815 -0.5788 38 1 -1.7442 -3.8212 -2.6331 39 1 -2.2151 -4.6120 -4.9104 40 1 -3.8677 -6.3539 -6.2960 41 1 1.5236 -6.7541 -4.9035 42 1 1.9669 -5.9348 -2.6308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776213903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:25 Heat of formation + Delta-G solvation = -59.847516 kcal Electronic energy + Delta-G solvation = -24193.864143 eV Core-core repulsion = 20681.709587 eV Total energy + Delta-G solvation = -3512.154557 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59505 -38.97135 -37.63689 -35.97845 -33.87565 -33.80523 -32.34620 -30.76647 -29.38173 -28.12569 -27.09728 -26.85228 -24.37557 -23.23289 -21.10269 -20.92884 -20.57823 -20.05654 -17.75081 -17.40061 -16.74764 -16.52687 -15.61454 -15.38816 -15.02324 -14.58457 -14.15581 -14.08398 -13.76699 -13.60061 -13.32791 -13.19686 -12.95060 -12.74987 -12.47947 -12.32685 -12.08571 -12.04086 -11.79930 -11.64787 -11.50712 -11.28495 -11.24759 -11.12793 -10.66897 -10.63804 -10.26463 -10.16911 -9.70752 -9.48192 -9.22265 -8.97276 -8.78094 -7.57039 -7.46469 -6.88061 -4.47102 0.93517 1.15314 2.30320 2.44316 2.93766 2.99943 3.02186 3.07421 3.31993 3.52446 3.85089 4.48631 4.53610 4.58659 4.71089 4.97065 5.07673 5.17539 5.29921 5.43267 5.47309 5.53061 5.59632 5.62359 5.64037 5.65006 5.68600 5.89986 6.04750 6.05273 6.19768 6.23907 6.25478 6.30248 6.32495 6.69739 6.78023 6.86468 6.96591 7.17084 7.25370 7.50758 7.72605 7.94976 7.98399 8.00398 8.18296 8.52911 8.77720 8.85890 10.06070 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002795 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.974837 B =10014.822401 C =10181.645591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.040 4.040 3 C -0.129 4.129 4 C -0.096 4.096 5 C -0.129 4.129 6 C -0.041 4.041 7 C -0.125 4.125 8 C -0.104 4.104 9 C 0.510 3.490 10 O -0.510 6.510 11 O -0.341 6.341 12 C 0.133 3.867 13 C -0.235 4.235 14 C -0.075 4.075 15 C -0.170 4.170 16 C 0.119 3.881 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.786 5.786 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.230 4.230 26 C -0.063 4.063 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.283 0.717 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 12.020 8.851 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.041 4.041 3 C -0.147 4.147 4 C -0.114 4.114 5 C -0.147 4.147 6 C -0.041 4.041 7 C -0.181 4.181 8 C -0.105 4.105 9 C 0.354 3.646 10 O -0.399 6.399 11 O -0.257 6.257 12 C 0.061 3.939 13 C -0.237 4.237 14 C -0.093 4.093 15 C -0.189 4.189 16 C 0.117 3.883 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.410 5.410 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.250 4.250 26 C -0.081 4.081 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.089 11.775 9.148 16.964 hybrid contribution -0.339 -0.214 -0.683 0.792 sum 7.750 11.561 8.464 16.290 Atomic orbital electron populations 1.20940 0.90511 1.03327 1.03476 1.19878 0.96307 0.91499 0.96376 1.20928 0.94291 0.97126 1.02355 1.21271 0.94184 0.98132 0.97776 1.20927 1.00017 0.91388 1.02382 1.19869 0.91454 0.96322 0.96481 1.20931 1.00301 0.93958 1.02945 1.19020 0.93142 0.90928 1.07429 1.21226 0.76132 0.84469 0.82815 1.90827 1.51764 1.63936 1.33395 1.86895 1.67868 1.38526 1.32442 1.21782 0.94432 0.80788 0.96889 1.18640 0.98976 1.09908 0.96134 1.20528 0.95196 0.98287 0.95319 1.21289 1.01791 1.01093 0.94757 1.17685 0.90406 0.87971 0.92275 1.19672 0.92605 1.37814 0.98406 0.90165 1.25971 0.95961 0.92223 1.00189 1.69822 1.00795 1.34076 1.36349 0.86281 0.78942 0.79197 0.82259 1.19458 1.19914 1.18285 1.20951 1.01159 1.07389 0.95461 1.20376 0.96191 0.96704 0.94866 0.89867 0.91369 0.90680 0.85269 0.85499 0.85278 0.90441 0.91117 0.90493 0.91998 0.91916 0.89335 0.86279 0.90638 0.88701 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.62 36.01 0.35 -1.13 16 2 C -0.04 -0.52 5.91 -104.21 -0.62 -1.14 16 3 C -0.13 -1.33 9.69 -39.64 -0.38 -1.72 16 4 C -0.10 -0.90 10.04 -39.49 -0.40 -1.29 16 5 C -0.13 -1.32 9.69 -39.64 -0.38 -1.71 16 6 C -0.04 -0.53 5.91 -104.21 -0.62 -1.14 16 7 C -0.12 -1.44 9.62 36.01 0.35 -1.09 16 8 C -0.10 -1.56 5.75 -104.98 -0.60 -2.16 16 9 C 0.51 8.91 4.34 34.61 0.15 9.06 16 10 O -0.51 -9.80 16.89 -19.25 -0.33 -10.13 16 11 O -0.34 -6.52 10.21 -40.52 -0.41 -6.93 16 12 C 0.13 2.58 5.59 36.01 0.20 2.78 16 13 C -0.24 -5.23 5.54 -104.33 -0.58 -5.81 16 14 C -0.07 -1.74 9.67 -39.66 -0.38 -2.13 16 15 C -0.17 -4.36 8.70 -38.87 -0.34 -4.69 16 16 C 0.12 3.13 5.57 -106.82 -0.60 2.53 16 17 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 18 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 19 C 0.08 1.84 5.14 -17.34 -0.09 1.76 16 20 N -0.79 -19.77 10.97 55.55 0.61 -19.16 16 21 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 26 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.91 7.09 -51.93 -0.37 0.54 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.07 0.95 7.08 -51.93 -0.37 0.58 16 35 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.13 6.18 -52.48 -0.32 2.80 16 40 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 41 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -29.06 361.78 -10.43 -39.49 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.67 Total: 6.01 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -5.05 Total: -27.79 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.61 Total: -19.16 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.74 Total: -17.06 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.06 -10.43 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776213903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.359 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds