Wall clock time and date at job start Tue Mar 31 2020 09:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37942 * 120.07872 * 2 1 4 4 C 1.38361 * 120.15247 * 179.72270 * 3 2 1 5 5 C 1.38371 * 120.30566 * 0.25904 * 4 3 2 6 6 C 1.37940 * 120.14600 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.07409 * 180.02562 * 6 5 4 8 8 C 1.39628 * 119.84985 * 359.97438 * 6 5 4 9 9 C 1.47731 * 120.15031 * 179.97438 * 8 6 5 10 10 O 1.21476 * 119.99416 * 90.00158 * 9 8 6 11 11 O 1.34712 * 120.00254 * 270.00538 * 9 8 6 12 12 C 1.45198 * 116.99676 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46980 * 179.97438 * 12 11 9 14 14 C 1.38637 * 119.74577 * 269.72823 * 13 12 11 15 15 C 1.37614 * 120.24726 * 179.72127 * 14 13 12 16 16 C 1.40718 * 119.74765 * 0.56543 * 15 14 13 17 17 C 1.41389 * 120.24877 * 179.68438 * 16 15 14 18 18 H 1.07999 * 120.00105 * 155.30968 * 17 16 15 19 19 C 1.39948 * 119.99980 * 335.30792 * 17 16 15 20 20 N 1.30817 * 119.99991 * 342.23761 * 19 17 16 21 21 Si 1.86797 * 120.00047 * 162.23332 * 19 17 16 22 22 H 1.48494 * 109.47391 * 94.66466 * 21 19 17 23 23 H 1.48506 * 109.47205 * 214.67046 * 21 19 17 24 24 H 1.48508 * 109.47262 * 334.66557 * 21 19 17 25 25 C 1.40722 * 119.50563 * 359.70626 * 16 15 14 26 26 C 1.37618 * 119.74656 * 359.97438 * 25 16 15 27 27 H 1.08994 * 109.47559 * 89.99914 * 1 2 3 28 28 H 1.09004 * 109.47101 * 209.99381 * 1 2 3 29 29 H 1.08995 * 109.46863 * 329.99236 * 1 2 3 30 30 H 1.08001 * 119.92020 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.84746 * 180.23466 * 4 3 2 32 32 H 1.08003 * 119.92499 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.47045 * 90.00308 * 7 6 5 34 34 H 1.09001 * 109.47358 * 210.00018 * 7 6 5 35 35 H 1.08997 * 109.47226 * 330.00134 * 7 6 5 36 36 H 1.08999 * 109.47154 * 299.99013 * 12 11 9 37 37 H 1.08994 * 109.47845 * 59.99772 * 12 11 9 38 38 H 1.08000 * 119.87883 * 359.96976 * 14 13 12 39 39 H 1.08008 * 120.13136 * 180.27320 * 15 14 13 40 40 H 0.97009 * 120.00492 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.12467 * 179.97438 * 25 16 15 42 42 H 1.07997 * 119.87033 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1937 0.0000 4 6 3.5820 1.1954 0.0058 5 6 4.2817 0.0017 0.0062 6 6 3.6030 -1.1991 0.0014 7 6 4.3668 -2.4983 0.0024 8 6 2.2068 -1.2083 -0.0034 9 6 1.4732 -2.4906 -0.0091 10 8 1.1680 -3.0203 1.0406 11 8 1.1428 -3.0723 -1.1784 12 6 0.4220 -4.3308 -1.1079 13 6 0.1403 -4.8271 -2.5026 14 6 -1.0355 -4.4601 -3.1390 15 6 -1.3006 -4.9027 -4.4148 16 6 -0.3784 -5.7405 -5.0689 17 6 -0.6432 -6.2068 -6.3771 18 1 0.1730 -6.4936 -7.0237 19 6 -1.9628 -6.2969 -6.8342 20 7 -2.9529 -6.2919 -5.9792 21 14 -2.3105 -6.4240 -8.6651 22 1 -2.4486 -7.8529 -9.0448 23 1 -3.5702 -5.7038 -8.9810 24 1 -1.1889 -5.8160 -9.4254 25 6 0.8091 -6.1112 -4.4110 26 6 1.0564 -5.6513 -3.1377 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6583 2.1290 0.0004 31 1 4.1182 2.1329 0.0096 32 1 5.3617 0.0103 0.0112 33 1 4.5466 -2.8132 1.0304 34 1 3.7859 -3.2617 -0.5151 35 1 5.3203 -2.3596 -0.5071 36 1 1.0255 -5.0659 -0.5754 37 1 -0.5192 -4.1815 -0.5788 38 1 -1.7442 -3.8212 -2.6331 39 1 -2.2151 -4.6120 -4.9104 40 1 -3.8677 -6.3539 -6.2960 41 1 1.5236 -6.7541 -4.9035 42 1 1.9669 -5.9348 -2.6308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776213903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:25 Heat of formation + Delta-G solvation = -71.494488 kcal Electronic energy + Delta-G solvation = -24194.369194 eV Core-core repulsion = 20681.709587 eV Total energy + Delta-G solvation = -3512.659607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84548 -40.09768 -39.40230 -37.49711 -35.70603 -34.67492 -33.29512 -32.51527 -31.26374 -29.35840 -28.60198 -27.67395 -25.91726 -24.55282 -22.98541 -21.95596 -21.80121 -21.67711 -19.29496 -18.98734 -18.13559 -17.76621 -17.20058 -16.52001 -16.28607 -15.97945 -15.68082 -15.30987 -15.13899 -14.99563 -14.41470 -14.23663 -14.08589 -13.99199 -13.92235 -13.87001 -13.69364 -13.32538 -13.09267 -12.98456 -12.79713 -12.63561 -12.55684 -12.43865 -12.22220 -12.08023 -11.76449 -11.67095 -11.46072 -11.32380 -11.04948 -9.88537 -9.61666 -9.46677 -9.36628 -8.70974 -6.41547 0.01631 0.31831 0.71904 0.95139 1.08460 1.37868 1.42505 1.53632 1.88411 2.18735 2.63107 2.69919 3.55035 3.66922 3.74918 3.79706 3.98305 4.02227 4.03389 4.31557 4.32896 4.41076 4.41306 4.44129 4.50877 4.59729 4.62822 4.66922 4.74023 4.83982 4.97533 5.04095 5.09828 5.17411 5.25490 5.28375 5.36786 5.38017 5.47559 5.48463 5.62393 5.84728 5.93324 6.03161 6.10936 6.29031 6.57883 6.61593 6.86269 6.94478 8.26140 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.002795 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.974837 B =10014.822401 C =10181.645591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 C -0.128 4.128 4 C -0.085 4.085 5 C -0.127 4.127 6 C -0.058 4.058 7 C -0.124 4.124 8 C -0.143 4.143 9 C 0.518 3.482 10 O -0.535 6.535 11 O -0.353 6.353 12 C 0.138 3.862 13 C -0.232 4.232 14 C -0.080 4.080 15 C -0.192 4.192 16 C 0.089 3.911 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.818 5.818 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.257 1.257 25 C -0.244 4.244 26 C -0.064 4.064 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.291 0.709 41 H 0.104 0.896 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 14.193 9.010 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.145 4.145 6 C -0.058 4.058 7 C -0.181 4.181 8 C -0.145 4.145 9 C 0.363 3.637 10 O -0.425 6.425 11 O -0.269 6.269 12 C 0.066 3.934 13 C -0.233 4.233 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.087 3.913 17 C -0.521 4.521 18 H 0.099 0.901 19 C -0.181 4.181 20 N -0.443 5.443 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.181 1.181 25 C -0.264 4.264 26 C -0.083 4.083 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.177 0.823 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.678 13.952 9.325 19.372 hybrid contribution -0.742 -0.786 -0.574 1.224 sum 8.936 13.165 8.752 18.160 Atomic orbital electron populations 1.20949 0.90425 1.03503 1.03262 1.20129 0.96748 0.91896 0.97141 1.21319 0.95108 0.97104 1.01025 1.21783 0.93947 0.99413 0.95160 1.21330 1.01622 0.90583 1.00960 1.20140 0.90757 0.97885 0.97053 1.20956 1.00933 0.92950 1.03240 1.19143 0.94212 0.89973 1.11123 1.21745 0.75306 0.84968 0.81702 1.90793 1.52912 1.64896 1.33945 1.86858 1.68040 1.38239 1.33793 1.21618 0.95133 0.81530 0.95134 1.18934 0.98269 1.09036 0.97064 1.20758 0.96064 0.98217 0.94789 1.21259 1.01705 1.02331 0.95876 1.18045 0.91451 0.88719 0.93118 1.19932 0.93683 1.39597 0.98867 0.90138 1.26839 0.95161 0.91193 1.04883 1.69867 1.01456 1.34445 1.38526 0.85155 0.78875 0.79501 0.75989 1.18574 1.18935 1.18113 1.21166 1.00992 1.07893 0.96329 1.20688 0.97168 0.96047 0.94360 0.90273 0.93835 0.87826 0.82307 0.81623 0.82194 0.89961 0.93760 0.87937 0.90920 0.91462 0.87685 0.87716 0.89817 0.87770 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 9.62 71.24 0.69 -2.20 16 2 C -0.06 -1.46 5.91 -19.60 -0.12 -1.57 16 3 C -0.13 -2.23 9.69 22.23 0.22 -2.01 16 4 C -0.09 -1.24 10.04 22.33 0.22 -1.01 16 5 C -0.13 -2.17 9.69 22.23 0.22 -1.96 16 6 C -0.06 -1.41 5.91 -19.60 -0.12 -1.53 16 7 C -0.12 -2.75 9.62 71.24 0.69 -2.06 16 8 C -0.14 -4.25 5.75 -20.10 -0.12 -4.36 16 9 C 0.52 18.43 4.34 70.33 0.30 18.74 16 10 O -0.53 -21.07 16.89 19.92 0.34 -20.73 16 11 O -0.35 -13.70 10.21 -56.22 -0.57 -14.27 16 12 C 0.14 5.39 5.59 71.24 0.40 5.79 16 13 C -0.23 -10.39 5.54 -19.67 -0.11 -10.50 16 14 C -0.08 -3.82 9.67 22.22 0.21 -3.61 16 15 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 16 C 0.09 4.85 5.57 -21.29 -0.12 4.73 16 17 C -0.49 -26.31 9.05 23.46 0.21 -26.10 16 18 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 19 C 0.04 1.76 5.14 85.26 0.44 2.19 16 20 N -0.82 -42.23 10.97 21.83 0.24 -42.00 16 21 Si 0.98 37.34 29.59 68.60 2.03 39.37 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 C -0.24 -12.10 9.80 22.73 0.22 -11.88 16 26 C -0.06 -2.90 9.67 22.22 0.21 -2.68 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.19 7.09 -2.38 -0.02 1.18 16 29 H 0.10 1.69 8.09 -2.39 -0.02 1.68 16 30 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.04 1.19 7.08 -2.39 -0.02 1.17 16 35 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.07 2.66 8.08 -2.39 -0.02 2.64 16 37 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 38 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.10 5.78 6.18 -2.91 -0.02 5.76 16 40 H 0.29 13.48 8.30 -92.70 -0.77 12.71 16 41 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -65.78 361.78 6.71 -59.07 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.02 Total: 28.63 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 3.65 Total: -50.07 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.24 Total: -35.00 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -65.78 6.71 -59.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776213903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.424 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds