Wall clock time and date at job start Tue Mar 31 2020 10:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46963 * 2 1 4 4 O 1.45205 * 109.47197 * 240.00000 * 2 1 3 5 5 C 1.34233 * 116.99623 * 89.99632 * 4 2 1 6 6 O 1.20826 * 120.00248 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99899 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47446 * 180.02562 * 7 5 4 9 9 C 1.37640 * 120.12560 * 264.98189 * 8 7 5 10 10 C 1.38615 * 120.24508 * 179.97438 * 9 8 7 11 11 C 1.38653 * 120.50505 * 0.03574 * 10 9 8 12 12 C 1.37602 * 120.24670 * 359.68187 * 11 10 9 13 13 C 1.40697 * 120.13087 * 84.99821 * 8 7 5 14 14 C 1.41400 * 120.24037 * 359.97438 * 13 8 7 15 15 H 1.07995 * 120.00005 * 26.26997 * 14 13 8 16 16 C 1.39948 * 119.99664 * 206.27031 * 14 13 8 17 17 N 1.30820 * 120.00409 * 16.45094 * 16 14 13 18 18 Si 1.86804 * 119.99707 * 196.45301 * 16 14 13 19 19 H 1.48496 * 109.47268 * 265.18600 * 18 16 14 20 20 H 1.48501 * 109.46902 * 25.18601 * 18 16 14 21 21 H 1.48505 * 109.47086 * 145.18489 * 18 16 14 22 22 C 1.50695 * 109.47352 * 120.00274 * 2 1 3 23 23 C 1.38232 * 120.00285 * 84.72647 * 22 2 1 24 24 C 1.38239 * 120.00207 * 179.81430 * 23 22 2 25 25 C 1.38230 * 119.99870 * 0.39356 * 24 23 22 26 26 C 1.38241 * 120.00149 * 359.85868 * 25 24 23 27 27 C 1.38229 * 119.99553 * 359.95325 * 26 25 24 28 28 H 1.08999 * 109.47081 * 59.99399 * 1 2 3 29 29 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46734 * 299.99983 * 1 2 3 31 31 H 1.09003 * 109.47096 * 60.00044 * 7 5 4 32 32 H 1.09006 * 109.46769 * 300.00307 * 7 5 4 33 33 H 1.07998 * 119.87799 * 0.02562 * 9 8 7 34 34 H 1.08003 * 119.74331 * 180.02562 * 10 9 8 35 35 H 1.07998 * 119.87893 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.13026 * 180.30283 * 12 11 10 37 37 H 0.96999 * 120.00009 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.00072 * 359.97438 * 23 22 2 39 39 H 1.08000 * 120.00203 * 180.22895 * 24 23 22 40 40 H 1.07997 * 119.99947 * 179.83827 * 25 24 23 41 41 H 1.08000 * 119.99723 * 179.97438 * 26 25 24 42 42 H 1.08008 * 119.99601 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7182 -0.5771 -3.5495 8 6 2.8612 0.4731 -4.6208 9 6 1.8418 0.6851 -5.5209 10 6 1.9705 1.6508 -6.5070 11 6 3.1251 2.4130 -6.5992 12 6 4.1547 2.2223 -5.7064 13 6 4.0375 1.2405 -4.7049 14 6 5.0913 1.0317 -3.7855 15 1 5.2122 0.0685 -3.3124 16 6 5.9776 2.0734 -3.4887 17 7 5.6632 3.3064 -3.7925 18 14 7.6096 1.7031 -2.6586 19 1 7.4682 1.8741 -1.1903 20 1 8.0110 0.3050 -2.9577 21 1 8.6469 2.6357 -3.1681 22 6 2.0324 -0.7104 1.2304 23 6 2.1591 -2.0869 1.2304 24 6 2.6236 -2.7383 2.3578 25 6 2.9536 -2.0138 3.4878 26 6 2.8220 -0.6377 3.4896 27 6 2.3612 0.0139 2.3609 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.0087 -1.3368 -3.8775 32 1 3.6871 -1.0407 -3.3640 33 1 0.9379 0.0974 -5.4583 34 1 1.1654 1.8106 -7.2088 35 1 3.2148 3.1624 -7.3717 36 1 5.0512 2.8203 -5.7770 37 1 6.2773 4.0283 -3.5864 38 1 1.8976 -2.6533 0.3488 39 1 2.7261 -3.8134 2.3566 40 1 3.3140 -2.5229 4.3695 41 1 3.0795 -0.0718 4.3727 42 1 2.2580 1.0890 2.3625 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776747249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:15 Heat of formation + Delta-G solvation = -51.525274 kcal Electronic energy + Delta-G solvation = -24858.155104 eV Core-core repulsion = 21346.361427 eV Total energy + Delta-G solvation = -3511.793677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14765 -39.03119 -37.61702 -35.88881 -33.62910 -32.94627 -31.72302 -30.92698 -29.49599 -29.24972 -27.08843 -25.11012 -23.98711 -22.72664 -21.55127 -20.95719 -20.26010 -19.27117 -17.28848 -17.14531 -16.93306 -15.82467 -15.60896 -15.34126 -14.96074 -14.65011 -14.42062 -13.85404 -13.68905 -13.60599 -13.39933 -13.04418 -12.88153 -12.60437 -12.31356 -12.13904 -11.82151 -11.58002 -11.49149 -11.23411 -11.17059 -11.09730 -10.93765 -10.75331 -10.69088 -10.42329 -10.22888 -9.61855 -9.51684 -9.38732 -9.15568 -8.95400 -8.79213 -7.38298 -7.33510 -6.73379 -4.35490 1.25697 1.37205 2.71233 2.88251 3.07079 3.08098 3.11140 3.25228 3.39654 3.77147 3.93688 4.62802 4.66841 4.86861 4.93677 5.08456 5.18233 5.28798 5.40562 5.47129 5.52282 5.69714 5.79215 5.84179 5.92886 5.93908 5.99610 6.12368 6.16643 6.26548 6.33804 6.39983 6.45748 6.49556 6.59166 6.74198 6.94134 7.08938 7.10765 7.25727 7.38600 7.61760 7.88183 8.00426 8.09905 8.28862 8.59147 8.63086 8.88403 8.97516 10.21172 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.004479 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.497968 B = 6249.855464 C = 7741.420514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.092 0.908 4 O -0.362 6.362 5 C 0.460 3.540 6 O -0.483 6.483 7 C -0.039 4.039 8 C -0.195 4.195 9 C -0.076 4.076 10 C -0.242 4.242 11 C -0.103 4.103 12 C -0.161 4.161 13 C 0.132 3.868 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.788 5.788 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.259 1.259 21 H -0.275 1.275 22 C -0.081 4.081 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.109 4.109 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.280 0.720 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -8.641 10.876 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.110 0.890 4 O -0.281 6.281 5 C 0.302 3.698 6 O -0.366 6.366 7 C -0.076 4.076 8 C -0.197 4.197 9 C -0.095 4.095 10 C -0.261 4.261 11 C -0.121 4.121 12 C -0.180 4.180 13 C 0.130 3.870 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.139 4.139 17 N -0.413 5.413 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.183 1.183 21 H -0.199 1.199 22 C -0.082 4.082 23 C -0.111 4.111 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.127 4.127 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.956 -8.000 10.935 14.427 hybrid contribution 0.725 0.240 0.546 0.939 sum -4.231 -7.760 11.481 14.489 Atomic orbital electron populations 1.22142 0.93725 1.02845 1.03022 1.21280 0.94106 0.96684 0.81107 0.88975 1.86575 1.78018 1.43076 1.20382 1.24314 0.74355 0.86531 0.84651 1.90653 1.46105 1.16404 1.83480 1.19953 1.02148 0.97562 0.87932 1.18967 0.96339 1.04938 0.99434 1.20311 0.96101 0.97451 0.95590 1.20305 0.99151 1.03208 1.03445 1.20701 0.94740 0.98258 0.98439 1.21295 0.99049 1.02143 0.95518 1.17334 0.90102 0.89326 0.90260 1.19512 1.09582 0.97994 1.22100 0.90527 1.25849 0.99104 0.94414 0.94537 1.69832 1.34974 0.99854 1.36602 0.86421 0.81500 0.79846 0.79767 1.19622 1.18297 1.19946 1.19721 0.99993 0.94277 0.94161 1.21063 0.97966 0.93852 0.98173 1.21170 0.99749 0.99924 0.93352 1.21159 1.00228 0.94288 0.98333 1.21075 1.00141 0.94685 0.98124 1.20997 0.98865 0.99972 0.92866 0.91418 0.91683 0.91077 0.89589 0.87972 0.89576 0.89544 0.89490 0.86465 0.90945 0.85274 0.86010 0.86233 0.86001 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.53 37.16 0.35 -1.76 16 2 C 0.12 1.94 2.77 -27.89 -0.08 1.86 16 3 H 0.09 1.62 7.07 -51.93 -0.37 1.26 16 4 O -0.36 -6.44 9.04 -39.27 -0.35 -6.80 16 5 C 0.46 9.62 7.92 36.00 0.29 9.90 16 6 O -0.48 -11.89 15.25 -18.75 -0.29 -12.17 16 7 C -0.04 -0.77 5.46 -29.04 -0.16 -0.93 16 8 C -0.20 -4.66 4.43 -103.91 -0.46 -5.12 16 9 C -0.08 -1.73 9.66 -39.66 -0.38 -2.12 16 10 C -0.24 -5.55 10.05 -39.29 -0.39 -5.94 16 11 C -0.10 -2.48 10.02 -39.66 -0.40 -2.87 16 12 C -0.16 -4.25 8.68 -38.87 -0.34 -4.58 16 13 C 0.13 3.50 5.56 -106.82 -0.59 2.91 16 14 C -0.46 -12.13 8.46 -37.74 -0.32 -12.45 16 15 H 0.08 1.91 6.37 -52.49 -0.33 1.57 16 16 C 0.08 2.02 5.16 -17.34 -0.09 1.93 16 17 N -0.79 -20.87 10.97 55.55 0.61 -20.26 16 18 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.08 -1.14 5.01 -104.63 -0.52 -1.66 16 23 C -0.09 -1.19 9.35 -39.58 -0.37 -1.56 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.11 -1.37 9.68 -39.58 -0.38 -1.76 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 32 H 0.10 1.98 6.49 -51.93 -0.34 1.65 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 37 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.13 1.59 7.63 -52.49 -0.40 1.19 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -30.39 359.03 -10.24 -40.63 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.55 Total: 8.55 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -5.04 Total: -29.32 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.61 Total: -20.26 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.64 Total: -18.97 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.39 -10.24 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776747249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.893 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds