Wall clock time and date at job start Tue Mar 31 2020 10:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46963 * 2 1 4 4 O 1.45205 * 109.47197 * 240.00000 * 2 1 3 5 5 C 1.34233 * 116.99623 * 89.99632 * 4 2 1 6 6 O 1.20826 * 120.00248 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99899 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47446 * 180.02562 * 7 5 4 9 9 C 1.37640 * 120.12560 * 264.98189 * 8 7 5 10 10 C 1.38615 * 120.24508 * 179.97438 * 9 8 7 11 11 C 1.38653 * 120.50505 * 0.03574 * 10 9 8 12 12 C 1.37602 * 120.24670 * 359.68187 * 11 10 9 13 13 C 1.40697 * 120.13087 * 84.99821 * 8 7 5 14 14 C 1.41400 * 120.24037 * 359.97438 * 13 8 7 15 15 H 1.07995 * 120.00005 * 26.26997 * 14 13 8 16 16 C 1.39948 * 119.99664 * 206.27031 * 14 13 8 17 17 N 1.30820 * 120.00409 * 16.45094 * 16 14 13 18 18 Si 1.86804 * 119.99707 * 196.45301 * 16 14 13 19 19 H 1.48496 * 109.47268 * 265.18600 * 18 16 14 20 20 H 1.48501 * 109.46902 * 25.18601 * 18 16 14 21 21 H 1.48505 * 109.47086 * 145.18489 * 18 16 14 22 22 C 1.50695 * 109.47352 * 120.00274 * 2 1 3 23 23 C 1.38232 * 120.00285 * 84.72647 * 22 2 1 24 24 C 1.38239 * 120.00207 * 179.81430 * 23 22 2 25 25 C 1.38230 * 119.99870 * 0.39356 * 24 23 22 26 26 C 1.38241 * 120.00149 * 359.85868 * 25 24 23 27 27 C 1.38229 * 119.99553 * 359.95325 * 26 25 24 28 28 H 1.08999 * 109.47081 * 59.99399 * 1 2 3 29 29 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46734 * 299.99983 * 1 2 3 31 31 H 1.09003 * 109.47096 * 60.00044 * 7 5 4 32 32 H 1.09006 * 109.46769 * 300.00307 * 7 5 4 33 33 H 1.07998 * 119.87799 * 0.02562 * 9 8 7 34 34 H 1.08003 * 119.74331 * 180.02562 * 10 9 8 35 35 H 1.07998 * 119.87893 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.13026 * 180.30283 * 12 11 10 37 37 H 0.96999 * 120.00009 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.00072 * 359.97438 * 23 22 2 39 39 H 1.08000 * 120.00203 * 180.22895 * 24 23 22 40 40 H 1.07997 * 119.99947 * 179.83827 * 25 24 23 41 41 H 1.08000 * 119.99723 * 179.97438 * 26 25 24 42 42 H 1.08008 * 119.99601 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7182 -0.5771 -3.5495 8 6 2.8612 0.4731 -4.6208 9 6 1.8418 0.6851 -5.5209 10 6 1.9705 1.6508 -6.5070 11 6 3.1251 2.4130 -6.5992 12 6 4.1547 2.2223 -5.7064 13 6 4.0375 1.2405 -4.7049 14 6 5.0913 1.0317 -3.7855 15 1 5.2122 0.0685 -3.3124 16 6 5.9776 2.0734 -3.4887 17 7 5.6632 3.3064 -3.7925 18 14 7.6096 1.7031 -2.6586 19 1 7.4682 1.8741 -1.1903 20 1 8.0110 0.3050 -2.9577 21 1 8.6469 2.6357 -3.1681 22 6 2.0324 -0.7104 1.2304 23 6 2.1591 -2.0869 1.2304 24 6 2.6236 -2.7383 2.3578 25 6 2.9536 -2.0138 3.4878 26 6 2.8220 -0.6377 3.4896 27 6 2.3612 0.0139 2.3609 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.0087 -1.3368 -3.8775 32 1 3.6871 -1.0407 -3.3640 33 1 0.9379 0.0974 -5.4583 34 1 1.1654 1.8106 -7.2088 35 1 3.2148 3.1624 -7.3717 36 1 5.0512 2.8203 -5.7770 37 1 6.2773 4.0283 -3.5864 38 1 1.8976 -2.6533 0.3488 39 1 2.7261 -3.8134 2.3566 40 1 3.3140 -2.5229 4.3695 41 1 3.0795 -0.0718 4.3727 42 1 2.2580 1.0890 2.3625 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776747249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:15 Heat of formation + Delta-G solvation = -64.376209 kcal Electronic energy + Delta-G solvation = -24858.712362 eV Core-core repulsion = 21346.361427 eV Total energy + Delta-G solvation = -3512.350935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61823 -40.15041 -39.35659 -37.44131 -35.52084 -34.18228 -33.40142 -31.80825 -31.38763 -30.26586 -28.82453 -26.98907 -25.14946 -23.70059 -22.92991 -22.78030 -21.58837 -20.95873 -19.13298 -18.57886 -18.18205 -17.34913 -17.05244 -16.91666 -16.26015 -16.02016 -15.67845 -15.48358 -15.35212 -14.85548 -14.44068 -14.38010 -14.25522 -14.08305 -13.66469 -13.46048 -13.32183 -13.18408 -12.98425 -12.85888 -12.74724 -12.54178 -12.52590 -12.13929 -12.09660 -11.80356 -11.60560 -11.37137 -11.29215 -11.22732 -11.04745 -9.84296 -9.72808 -9.27046 -9.23175 -8.61858 -6.31977 0.32664 0.48272 0.91705 1.07924 1.33379 1.43451 1.45515 1.51133 1.90770 2.17634 2.76836 2.84960 3.53729 3.70592 3.90638 3.95112 4.09015 4.16814 4.18133 4.28466 4.32865 4.35837 4.56190 4.58540 4.60855 4.67443 4.72863 4.74540 4.81732 4.97391 4.99609 5.07425 5.15321 5.20759 5.33864 5.43874 5.50951 5.55327 5.60285 5.70450 5.75980 6.00670 6.07754 6.10517 6.19516 6.39257 6.70787 6.94298 6.99786 7.07288 8.35377 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.004479 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.497968 B = 6249.855464 C = 7741.420514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 H 0.064 0.936 4 O -0.353 6.353 5 C 0.466 3.534 6 O -0.529 6.529 7 C -0.039 4.039 8 C -0.200 4.200 9 C -0.085 4.085 10 C -0.242 4.242 11 C -0.112 4.112 12 C -0.193 4.193 13 C 0.100 3.900 14 C -0.490 4.490 15 H 0.080 0.920 16 C 0.034 3.966 17 N -0.827 5.827 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.250 1.250 21 H -0.265 1.265 22 C -0.103 4.103 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.125 4.125 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.284 0.716 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -10.903 12.447 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.065 3.935 3 H 0.082 0.918 4 O -0.271 6.271 5 C 0.310 3.690 6 O -0.417 6.417 7 C -0.076 4.076 8 C -0.201 4.201 9 C -0.103 4.103 10 C -0.261 4.261 11 C -0.130 4.130 12 C -0.213 4.213 13 C 0.098 3.902 14 C -0.519 4.519 15 H 0.098 0.902 16 C -0.180 4.180 17 N -0.454 5.454 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.173 1.173 21 H -0.190 1.190 22 C -0.103 4.103 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.145 0.855 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.395 -10.292 12.504 17.070 hybrid contribution 0.734 0.898 0.090 1.163 sum -4.661 -9.394 12.594 16.389 Atomic orbital electron populations 1.22100 0.91856 1.03863 1.03127 1.21470 0.95683 0.95372 0.80991 0.91826 1.86540 1.77618 1.42543 1.20391 1.24387 0.73276 0.85883 0.85471 1.90641 1.48365 1.18307 1.84350 1.20023 1.03573 0.97274 0.86762 1.19383 0.95640 1.04819 1.00273 1.20761 0.96976 0.97604 0.94928 1.20737 0.99265 1.02376 1.03748 1.20988 0.94707 0.98906 0.98444 1.21312 0.99517 1.03253 0.97203 1.17717 0.91522 0.90284 0.90661 1.19755 1.10755 0.98508 1.22897 0.90160 1.26706 1.02312 0.93976 0.95028 1.69913 1.36348 1.00823 1.38272 0.85394 0.77133 0.80139 0.78370 1.19600 1.17301 1.18964 1.19664 1.01984 0.94984 0.93656 1.21177 0.98741 0.93364 0.99170 1.21502 0.98637 1.01347 0.92733 1.21579 0.98849 0.94117 0.99141 1.21411 0.99164 0.95414 0.98202 1.21165 0.99553 1.00283 0.93354 0.93046 0.90111 0.89187 0.85519 0.87526 0.86140 0.86427 0.87523 0.88431 0.90545 0.85285 0.83434 0.83143 0.83605 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.53 71.98 0.69 -3.29 16 2 C 0.12 3.82 2.77 29.85 0.08 3.90 16 3 H 0.06 2.38 7.07 -2.39 -0.02 2.36 16 4 O -0.35 -12.57 9.04 -51.45 -0.47 -13.03 16 5 C 0.47 19.63 7.92 71.23 0.56 20.19 16 6 O -0.53 -26.89 15.25 21.96 0.34 -26.56 16 7 C -0.04 -1.54 5.46 29.10 0.16 -1.39 16 8 C -0.20 -9.51 4.43 -19.41 -0.09 -9.59 16 9 C -0.08 -3.72 9.66 22.22 0.21 -3.51 16 10 C -0.24 -10.78 10.05 22.46 0.23 -10.55 16 11 C -0.11 -5.44 10.02 22.22 0.22 -5.21 16 12 C -0.19 -10.60 8.68 22.73 0.20 -10.40 16 13 C 0.10 5.46 5.56 -21.29 -0.12 5.35 16 14 C -0.49 -26.48 8.46 23.46 0.20 -26.28 16 15 H 0.08 4.10 6.37 -2.91 -0.02 4.08 16 16 C 0.03 1.79 5.16 85.26 0.44 2.23 16 17 N -0.83 -45.79 10.97 21.83 0.24 -45.55 16 18 Si 0.97 39.73 29.59 68.60 2.03 41.76 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 22 C -0.10 -2.82 5.01 -19.87 -0.10 -2.92 16 23 C -0.11 -2.58 9.35 22.27 0.21 -2.37 16 24 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 25 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 27 C -0.13 -3.08 9.68 22.27 0.22 -2.86 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.13 3.87 8.05 -2.39 -0.02 3.86 16 32 H 0.11 4.10 6.49 -2.38 -0.02 4.08 16 33 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.10 5.61 6.22 -2.91 -0.02 5.59 16 37 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 38 H 0.13 3.01 7.63 -2.91 -0.02 2.99 16 39 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.12 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -68.56 359.03 6.94 -61.62 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 1.02 Total: 34.70 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 3.78 Total: -52.93 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.24 Total: -45.55 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.13 Total: -39.59 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -68.56 6.94 -61.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776747249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.761 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds