Wall clock time and date at job start Tue Mar 31 2020 10:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 N 1.39880 * 125.73577 * 299.69719 * 4 2 1 6 6 C 1.30269 * 109.26006 * 179.80395 * 5 4 2 7 7 C 1.41544 * 108.18142 * 0.44824 * 6 5 4 8 8 C 1.46596 * 126.53391 * 179.69940 * 7 6 5 9 9 O 1.21609 * 120.00297 * 180.02562 * 8 7 6 10 10 O 1.34852 * 119.99646 * 0.02562 * 8 7 6 11 11 C 1.45199 * 116.99522 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46597 * 179.97438 * 11 10 8 13 13 O 1.21273 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34786 * 119.99619 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99876 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47382 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99401 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00237 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99752 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47053 * 60.00696 * 20 18 16 22 22 H 1.48500 * 109.46907 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47295 * 300.00299 * 20 18 16 24 24 C 1.34831 * 125.73429 * 119.99657 * 4 2 1 25 25 N 1.37944 * 126.45453 * 0.02562 * 24 4 2 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.07999 * 125.90780 * 180.16100 * 6 5 4 34 34 H 1.08990 * 109.47354 * 299.99710 * 11 10 8 35 35 H 1.08996 * 109.47271 * 60.00462 * 11 10 8 36 36 H 0.96996 * 120.00195 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46976 * 300.00080 * 15 14 12 38 38 H 1.09002 * 109.47081 * 59.99728 * 15 14 12 39 39 H 0.96998 * 119.99379 * 179.97438 * 19 18 16 40 40 H 0.96995 * 120.00219 * 0.02562 * 25 24 4 41 41 H 0.97001 * 120.00287 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7604 -0.3154 2.5187 6 6 2.3460 -1.1541 3.3254 7 6 3.0271 -2.1171 2.5429 8 6 3.8232 -3.2423 3.0420 9 8 4.3608 -4.0016 2.2589 10 8 3.9595 -3.4353 4.3697 11 6 4.7624 -4.5690 4.7919 12 6 4.8014 -4.6239 6.2974 13 8 4.2105 -3.7900 6.9502 14 7 5.4933 -5.5998 6.9185 15 6 5.5308 -5.6535 8.3820 16 6 6.3642 -6.8301 8.8203 17 1 6.8206 -7.4732 8.0825 18 6 6.5449 -7.0848 10.1632 19 7 5.9895 -6.3013 11.0617 20 14 7.5774 -8.5437 10.7065 21 1 8.9582 -8.3961 10.1804 22 1 7.6155 -8.5980 12.1900 23 1 6.9787 -9.7969 10.1809 24 6 2.7968 -1.7915 1.2071 25 7 3.2756 -2.4678 0.1043 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 2.3204 -1.1179 4.4044 34 1 4.3236 -5.4889 4.4058 35 1 5.7760 -4.4601 4.4063 36 1 5.9656 -6.2670 6.3964 37 1 5.9692 -4.7332 8.7682 38 1 4.5172 -5.7628 8.7677 39 1 6.1163 -6.4807 12.0064 40 1 3.0566 -2.1570 -0.7880 41 1 3.8318 -3.2539 0.2212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783194158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:17 Heat of formation + Delta-G solvation = -79.892116 kcal Electronic energy + Delta-G solvation = -24601.890596 eV Core-core repulsion = 20710.310328 eV Total energy + Delta-G solvation = -3891.580268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52655 -41.21996 -40.15684 -37.37171 -36.66991 -36.14655 -35.71961 -34.38760 -31.60003 -30.70968 -29.88269 -28.33446 -28.20963 -24.97243 -24.18159 -23.84185 -21.60778 -21.44262 -20.99487 -19.25577 -18.85479 -18.47700 -17.85578 -17.67945 -17.23166 -16.99433 -16.74719 -16.49448 -15.92530 -15.90187 -15.73851 -15.23081 -14.65151 -14.42395 -14.27366 -14.05133 -13.94301 -13.70106 -13.54060 -13.12871 -13.11684 -12.93686 -12.66584 -12.42164 -12.39465 -12.28795 -12.22402 -11.92465 -11.77572 -11.50564 -11.34142 -10.85376 -10.78645 -10.10378 -9.89138 -9.04455 -8.27457 -6.44161 0.53195 1.04494 1.10329 1.44670 1.49321 1.53825 1.58579 1.60800 2.22032 2.37439 2.60263 2.68754 3.07423 3.39601 3.74897 3.82311 3.91457 3.94472 4.01605 4.12438 4.14658 4.25514 4.52123 4.68665 4.69534 4.80675 4.80925 5.10391 5.17487 5.23797 5.24608 5.32891 5.43284 5.45370 5.56784 5.66548 5.84291 6.17922 6.41926 6.64841 6.75042 6.81069 6.88351 7.23047 7.39877 8.84442 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.002096 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.758496 B =13358.047586 C =13837.442440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 C -0.157 4.157 4 N -0.386 5.386 5 N -0.313 5.313 6 C 0.126 3.874 7 C -0.385 4.385 8 C 0.551 3.449 9 O -0.553 6.553 10 O -0.345 6.345 11 C 0.065 3.935 12 C 0.499 3.501 13 O -0.583 6.583 14 N -0.699 5.699 15 C 0.267 3.733 16 C -0.558 4.558 17 H 0.086 0.914 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.449 3.551 25 N -0.810 5.810 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.197 0.803 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.412 0.588 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.269 0.731 40 H 0.419 0.581 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 10.353 -30.385 32.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 C -0.215 4.215 4 N -0.175 5.175 5 N -0.131 5.131 6 C -0.065 4.065 7 C -0.402 4.402 8 C 0.401 3.599 9 O -0.446 6.446 10 O -0.261 6.261 11 C -0.012 4.012 12 C 0.285 3.715 13 O -0.463 6.463 14 N -0.351 5.351 15 C 0.144 3.856 16 C -0.595 4.595 17 H 0.104 0.896 18 C -0.197 4.197 19 N -0.568 5.568 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.212 1.212 23 H -0.187 1.187 24 C 0.211 3.789 25 N -0.362 5.362 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.214 0.786 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.249 0.751 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.078 0.922 40 H 0.252 0.748 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.404 11.874 -30.106 33.436 hybrid contribution 1.242 -1.758 0.616 2.239 sum -7.162 10.116 -29.489 31.988 Atomic orbital electron populations 1.22121 0.92359 1.02839 1.04196 1.21746 0.96461 0.94538 0.82454 1.22121 1.01339 0.93863 1.04200 1.48880 1.40810 1.20985 1.06849 1.77067 1.26109 1.23813 0.86095 1.24110 0.91734 0.89950 1.00736 1.18380 1.23105 1.07254 0.91442 1.19927 0.77360 0.83071 0.79553 1.90704 1.49359 1.47606 1.56951 1.86605 1.66150 1.47766 1.25548 1.22664 0.98349 0.89841 0.90382 1.20729 0.79076 0.81448 0.90224 1.90678 1.46135 1.40958 1.68530 1.46030 1.50944 1.29363 1.08777 1.18615 0.95372 0.96188 0.75392 1.21590 1.32554 1.12197 0.93194 0.89558 1.26073 0.97011 1.00127 0.96447 1.70134 1.44840 1.39932 1.01930 0.85186 0.78853 0.78220 0.76822 1.18657 1.21192 1.18669 1.17918 0.87197 0.85459 0.88363 1.41779 1.56828 1.33120 1.04449 0.92596 0.92678 0.87707 0.85645 0.92590 0.92688 0.87712 0.78594 0.85983 0.85994 0.75141 0.99029 0.99033 0.92229 0.74850 0.73385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.45 71.98 0.68 -0.66 16 2 C 0.15 1.36 3.67 44.99 0.17 1.53 16 3 C -0.16 -1.34 9.44 71.98 0.68 -0.66 16 4 N -0.39 -6.90 3.26 -323.33 -1.06 -7.96 16 5 N -0.31 -7.50 12.30 -56.19 -0.69 -8.19 16 6 C 0.13 3.27 11.86 85.74 1.02 4.29 16 7 C -0.38 -10.08 6.15 -20.00 -0.12 -10.20 16 8 C 0.55 16.34 7.93 70.00 0.56 16.90 16 9 O -0.55 -16.06 14.94 19.48 0.29 -15.77 16 10 O -0.35 -11.62 9.60 -51.26 -0.49 -12.12 16 11 C 0.06 1.98 5.96 71.24 0.42 2.40 16 12 C 0.50 20.75 7.91 87.66 0.69 21.44 16 13 O -0.58 -30.18 16.50 15.79 0.26 -29.92 16 14 N -0.70 -29.61 5.55 -466.78 -2.59 -32.20 16 15 C 0.27 14.66 5.43 85.63 0.46 15.12 16 16 C -0.56 -30.20 9.28 25.60 0.24 -29.96 16 17 H 0.09 4.18 7.60 -2.91 -0.02 4.15 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 20 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 C 0.45 8.78 7.98 132.74 1.06 9.84 16 25 N -0.81 -9.83 9.02 -54.56 -0.49 -10.32 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.13 0.32 6.77 -2.39 -0.02 0.30 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.20 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.41 14.04 8.32 -92.71 -0.77 13.26 16 37 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.42 1.77 7.61 -92.71 -0.71 1.06 16 41 H 0.43 6.11 7.02 -92.71 -0.65 5.46 16 Total: -1.00 -79.85 360.92 2.82 -77.02 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.03 Total: 20.36 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 6.32 Total: 30.67 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.54 Total: -114.54 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: 0.06 Total: -57.80 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -79.85 2.82 -77.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783194158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.867 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds