Wall clock time and date at job start Tue Mar 31 2020 10:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47799 * 120.00156 * 2 1 3 5 5 C 1.38224 * 120.01055 * 59.99645 * 4 2 1 6 6 C 1.38219 * 120.02221 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05383 * 0.02807 * 6 5 4 8 8 C 1.38170 * 120.02442 * 359.97438 * 7 6 5 9 9 C 1.38432 * 120.01322 * 239.72360 * 4 2 1 10 10 F 1.35099 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53001 * 109.46901 * 240.00268 * 2 1 3 12 12 H 1.08999 * 109.47164 * 299.99522 * 11 2 1 13 13 O 1.42903 * 109.47171 * 179.97438 * 11 2 1 14 14 C 1.50707 * 109.47316 * 59.99941 * 11 2 1 15 15 O 1.20823 * 119.99815 * 114.99650 * 14 11 2 16 16 O 1.34232 * 119.99215 * 294.99910 * 14 11 2 17 17 C 1.45200 * 116.99096 * 179.97438 * 16 14 11 18 18 C 1.53004 * 109.46734 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47339 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47076 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00218 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99571 * 179.97438 * 20 19 18 23 23 N 1.31508 * 119.99965 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99716 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46960 * 60.00305 * 24 22 20 26 26 H 1.48501 * 109.46901 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47420 * 300.00065 * 24 22 20 28 28 H 1.08997 * 109.47655 * 60.00037 * 1 2 3 29 29 H 1.09009 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46908 * 299.99495 * 1 2 3 31 31 H 1.08001 * 119.98467 * 359.96404 * 5 4 2 32 32 H 1.08004 * 119.97321 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.98749 * 179.97438 * 7 6 5 34 34 H 1.08009 * 120.01360 * 179.97438 * 8 7 6 35 35 H 0.96700 * 114.00311 * 300.00378 * 13 11 2 36 36 H 1.08995 * 109.47524 * 299.99566 * 17 16 14 37 37 H 1.09002 * 109.47518 * 60.00257 * 17 16 14 38 38 H 1.09005 * 109.46840 * 300.00072 * 18 17 16 39 39 H 1.09000 * 109.47195 * 59.99443 * 18 17 16 40 40 H 1.09004 * 109.46370 * 300.00015 * 19 18 17 41 41 H 1.09000 * 109.46681 * 59.99691 * 19 18 17 42 42 H 0.97001 * 119.99896 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6987 -2.0338 1.4494 6 6 2.1599 -2.6857 2.5775 7 6 2.9550 -2.0151 3.4885 8 6 3.2898 -0.6922 3.2716 9 6 2.8331 -0.0396 2.1388 10 9 3.1641 1.2524 1.9233 11 6 2.0399 -0.7212 -1.2493 12 1 1.6766 -1.7489 -1.2493 13 8 3.4690 -0.7207 -1.2497 14 6 1.5376 -0.0107 -2.4798 15 8 2.3190 0.5268 -3.2283 16 8 0.2220 0.0248 -2.7440 17 6 -0.1900 0.7272 -3.9461 18 6 -1.7128 0.6608 -4.0790 19 6 -2.1471 1.4004 -5.3460 20 6 -3.6470 1.3354 -5.4765 21 1 -4.2320 0.8181 -4.7306 22 6 -4.2724 1.9366 -6.5482 23 7 -3.5600 2.5670 -7.4562 24 14 -6.1316 1.8555 -6.7103 25 1 -6.7600 2.4921 -5.5249 26 1 -6.5531 2.5745 -7.9394 27 1 -6.5597 0.4361 -6.7951 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.0772 -2.5584 0.7388 32 1 1.8990 -3.7199 2.7476 33 1 3.3144 -2.5254 4.3698 34 1 3.9106 -0.1683 3.9836 35 1 3.8620 0.1628 -1.2498 36 1 0.1245 1.7690 -3.8841 37 1 0.2709 0.2597 -4.8162 38 1 -2.0270 -0.3812 -4.1412 39 1 -2.1742 1.1280 -3.2089 40 1 -1.8328 2.4423 -5.2842 41 1 -1.6857 0.9327 -6.2158 42 1 -4.0000 2.9903 -8.2100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870073852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:03 Heat of formation + Delta-G solvation = -178.693409 kcal Electronic energy + Delta-G solvation = -25190.482242 eV Core-core repulsion = 21242.404916 eV Total energy + Delta-G solvation = -3948.077326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.19724 -40.82889 -39.52434 -37.59046 -36.35032 -34.50949 -33.95937 -31.76157 -30.89377 -30.12554 -27.76971 -26.65991 -24.51722 -23.37993 -22.87101 -21.41203 -20.70738 -20.33363 -18.39060 -17.78160 -17.48551 -16.83346 -16.66920 -16.29709 -15.92359 -15.89924 -15.37853 -14.94209 -14.52513 -14.49345 -14.07821 -13.93458 -13.66455 -13.46851 -12.98203 -12.66605 -12.45049 -12.33382 -12.26784 -12.08191 -12.01140 -11.91549 -11.43219 -11.20728 -10.97116 -10.90659 -10.68978 -10.65528 -10.40067 -10.21248 -9.76417 -9.51737 -9.28334 -9.20236 -8.96702 -8.41025 -6.05782 -4.09156 0.80143 0.85592 2.12813 2.67197 3.23202 3.30618 3.35228 3.37451 3.84954 3.90828 4.21616 4.25569 4.41111 4.47983 4.57208 4.69970 4.77474 4.89945 4.96502 5.07654 5.24156 5.30112 5.49001 5.51959 5.55750 5.61843 5.68050 5.74138 5.81104 5.94825 5.99838 6.05270 6.18021 6.40394 6.48785 6.53782 6.76153 6.93308 7.11646 7.56794 7.67636 7.77344 7.92059 8.32776 8.96871 9.55248 11.05602 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.002446 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.640758 B =11442.527680 C =11910.873098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.097 4.097 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.153 4.153 9 C 0.103 3.897 10 F -0.138 7.138 11 C 0.128 3.872 12 H 0.137 0.863 13 O -0.529 6.529 14 C 0.429 3.571 15 O -0.502 6.502 16 O -0.349 6.349 17 C 0.064 3.936 18 C -0.108 4.108 19 C 0.024 3.976 20 C -0.523 4.523 21 H 0.057 0.943 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.385 0.615 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 -9.453 22.758 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.098 4.098 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.113 4.113 8 C -0.171 4.171 9 C 0.084 3.916 10 F -0.117 7.117 11 C 0.067 3.933 12 H 0.154 0.846 13 O -0.334 6.334 14 C 0.270 3.730 15 O -0.390 6.390 16 O -0.266 6.266 17 C -0.009 4.009 18 C -0.145 4.145 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.075 0.925 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.732 -9.753 22.314 27.957 hybrid contribution -0.754 0.974 -0.385 1.290 sum 12.979 -8.779 21.929 26.952 Atomic orbital electron populations 1.22031 0.91306 1.03684 1.04093 1.20723 0.98705 0.99789 0.90701 0.89059 1.19602 0.98949 0.95155 0.96062 1.20922 0.98733 0.92897 0.97556 1.21204 0.98318 1.00465 0.94451 1.21015 0.97381 0.93510 0.99439 1.21128 1.02763 0.96029 0.97216 1.17534 0.98819 0.79137 0.96136 1.91491 1.90888 1.34551 1.94752 1.21630 0.82376 1.01077 0.88231 0.84557 1.86633 1.16095 1.34586 1.96105 1.24536 0.81931 0.78649 0.87843 1.90684 1.56975 1.42582 1.48741 1.86564 1.24491 1.70040 1.45468 1.23568 0.98240 0.95838 0.83269 1.21767 0.88916 1.02071 1.01784 1.19050 0.96446 0.95294 0.90523 1.21121 0.91800 1.34763 1.08401 0.92472 1.25031 0.98453 0.95216 0.95752 1.69951 1.35581 1.35466 1.12328 0.86604 0.85409 0.78237 0.77441 1.20172 1.21256 1.20164 0.89263 0.91532 0.91815 0.84848 0.85214 0.85108 0.84810 0.76594 0.91468 0.91446 0.92088 0.92110 0.96272 0.96262 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.48 37.16 0.32 -1.17 16 2 C -0.08 -0.78 2.31 -91.77 -0.21 -0.99 16 3 H 0.09 0.94 7.13 -51.93 -0.37 0.57 16 4 C -0.10 -0.89 4.44 -104.55 -0.46 -1.35 16 5 C -0.08 -0.64 8.71 -39.59 -0.34 -0.98 16 6 C -0.13 -0.83 10.04 -39.58 -0.40 -1.23 16 7 C -0.10 -0.61 10.04 -39.60 -0.40 -1.01 16 8 C -0.15 -1.18 10.03 -39.52 -0.40 -1.58 16 9 C 0.10 0.99 7.25 -39.42 -0.29 0.70 16 10 F -0.14 -1.48 16.19 2.25 0.04 -1.44 16 11 C 0.13 1.38 2.91 -27.88 -0.08 1.30 16 12 H 0.14 1.25 7.39 -51.93 -0.38 0.86 16 13 O -0.53 -6.01 12.62 -55.15 -0.70 -6.71 16 14 C 0.43 6.17 7.13 36.01 0.26 6.43 16 15 O -0.50 -8.78 16.07 -25.46 -0.41 -9.19 16 16 O -0.35 -5.30 7.44 -39.26 -0.29 -5.59 16 17 C 0.06 1.13 5.47 37.16 0.20 1.33 16 18 C -0.11 -2.15 5.53 -26.73 -0.15 -2.30 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 24 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.09 1.03 5.54 -51.93 -0.29 0.74 16 29 H 0.07 0.56 7.39 -51.92 -0.38 0.17 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 0.82 7.10 -52.49 -0.37 0.45 16 32 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.38 3.68 8.79 45.56 0.40 4.08 16 36 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 37 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -32.30 358.90 -7.90 -40.21 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.17 Total: 0.59 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.50 Total: -13.69 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -1.40 Total: -21.49 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.30 -7.90 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.488 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds