Wall clock time and date at job start Tue Mar 31 2020 10:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47799 * 120.00156 * 2 1 3 5 5 C 1.38224 * 120.01055 * 59.99645 * 4 2 1 6 6 C 1.38219 * 120.02221 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05383 * 0.02807 * 6 5 4 8 8 C 1.38170 * 120.02442 * 359.97438 * 7 6 5 9 9 C 1.38432 * 120.01322 * 239.72360 * 4 2 1 10 10 F 1.35099 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53001 * 109.46901 * 240.00268 * 2 1 3 12 12 H 1.08999 * 109.47164 * 299.99522 * 11 2 1 13 13 O 1.42903 * 109.47171 * 179.97438 * 11 2 1 14 14 C 1.50707 * 109.47316 * 59.99941 * 11 2 1 15 15 O 1.20823 * 119.99815 * 114.99650 * 14 11 2 16 16 O 1.34232 * 119.99215 * 294.99910 * 14 11 2 17 17 C 1.45200 * 116.99096 * 179.97438 * 16 14 11 18 18 C 1.53004 * 109.46734 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.47339 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47076 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00218 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99571 * 179.97438 * 20 19 18 23 23 N 1.31508 * 119.99965 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99716 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46960 * 60.00305 * 24 22 20 26 26 H 1.48501 * 109.46901 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47420 * 300.00065 * 24 22 20 28 28 H 1.08997 * 109.47655 * 60.00037 * 1 2 3 29 29 H 1.09009 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46908 * 299.99495 * 1 2 3 31 31 H 1.08001 * 119.98467 * 359.96404 * 5 4 2 32 32 H 1.08004 * 119.97321 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.98749 * 179.97438 * 7 6 5 34 34 H 1.08009 * 120.01360 * 179.97438 * 8 7 6 35 35 H 0.96700 * 114.00311 * 300.00378 * 13 11 2 36 36 H 1.08995 * 109.47524 * 299.99566 * 17 16 14 37 37 H 1.09002 * 109.47518 * 60.00257 * 17 16 14 38 38 H 1.09005 * 109.46840 * 300.00072 * 18 17 16 39 39 H 1.09000 * 109.47195 * 59.99443 * 18 17 16 40 40 H 1.09004 * 109.46370 * 300.00015 * 19 18 17 41 41 H 1.09000 * 109.46681 * 59.99691 * 19 18 17 42 42 H 0.97001 * 119.99896 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6987 -2.0338 1.4494 6 6 2.1599 -2.6857 2.5775 7 6 2.9550 -2.0151 3.4885 8 6 3.2898 -0.6922 3.2716 9 6 2.8331 -0.0396 2.1388 10 9 3.1641 1.2524 1.9233 11 6 2.0399 -0.7212 -1.2493 12 1 1.6766 -1.7489 -1.2493 13 8 3.4690 -0.7207 -1.2497 14 6 1.5376 -0.0107 -2.4798 15 8 2.3190 0.5268 -3.2283 16 8 0.2220 0.0248 -2.7440 17 6 -0.1900 0.7272 -3.9461 18 6 -1.7128 0.6608 -4.0790 19 6 -2.1471 1.4004 -5.3460 20 6 -3.6470 1.3354 -5.4765 21 1 -4.2320 0.8181 -4.7306 22 6 -4.2724 1.9366 -6.5482 23 7 -3.5600 2.5670 -7.4562 24 14 -6.1316 1.8555 -6.7103 25 1 -6.7600 2.4921 -5.5249 26 1 -6.5531 2.5745 -7.9394 27 1 -6.5597 0.4361 -6.7951 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.0772 -2.5584 0.7388 32 1 1.8990 -3.7199 2.7476 33 1 3.3144 -2.5254 4.3698 34 1 3.9106 -0.1683 3.9836 35 1 3.8620 0.1628 -1.2498 36 1 0.1245 1.7690 -3.8841 37 1 0.2709 0.2597 -4.8162 38 1 -2.0270 -0.3812 -4.1412 39 1 -2.1742 1.1280 -3.2089 40 1 -1.8328 2.4423 -5.2842 41 1 -1.6857 0.9327 -6.2158 42 1 -4.0000 2.9903 -8.2100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:02 Heat of formation + Delta-G solvation = -196.827202 kcal Electronic energy + Delta-G solvation = -25191.268582 eV Core-core repulsion = 21242.404916 eV Total energy + Delta-G solvation = -3948.863666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.91484 -41.96577 -40.23284 -38.58727 -37.54320 -35.99830 -35.18187 -33.67556 -31.44100 -30.84591 -29.21617 -27.98849 -25.52959 -24.78841 -23.59765 -22.40536 -22.18325 -21.47780 -19.39332 -18.80867 -18.50109 -18.25537 -17.85466 -17.51086 -16.78139 -16.56441 -16.52046 -16.31070 -15.94079 -15.39866 -15.08676 -14.98127 -14.61712 -14.25229 -14.13454 -13.95368 -13.82874 -13.62962 -13.37666 -13.13118 -12.94531 -12.81458 -12.78138 -12.52512 -12.44683 -12.20689 -12.03692 -11.82321 -11.81703 -11.61119 -11.38287 -11.31548 -11.06983 -10.56885 -9.85399 -9.57182 -8.21739 -6.33365 0.21669 0.30429 0.96234 1.41133 1.44846 1.47683 1.53334 2.41300 2.66770 3.00105 3.12280 3.27107 3.42215 3.50784 3.66293 3.80912 3.97962 3.99191 4.04346 4.19038 4.29840 4.34264 4.40092 4.45452 4.54701 4.79749 4.81304 4.86783 4.97810 5.03791 5.08038 5.14250 5.24899 5.32581 5.41430 5.44903 5.49838 5.53597 5.63684 5.80116 5.99839 6.18294 6.25306 6.57594 6.82801 7.36299 8.90289 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.002446 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.640758 B =11442.527680 C =11910.873098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 H 0.078 0.922 4 C -0.108 4.108 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.093 4.093 8 C -0.160 4.160 9 C 0.075 3.925 10 F -0.153 7.153 11 C 0.139 3.861 12 H 0.161 0.839 13 O -0.535 6.535 14 C 0.429 3.571 15 O -0.536 6.536 16 O -0.339 6.339 17 C 0.073 3.927 18 C -0.091 4.091 19 C 0.025 3.975 20 C -0.542 4.542 21 H 0.067 0.933 22 C -0.002 4.002 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.391 0.609 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.070 0.930 40 H -0.005 1.005 41 H -0.005 1.005 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.803 -11.578 24.900 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 H 0.096 0.904 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.142 4.142 7 C -0.111 4.111 8 C -0.179 4.179 9 C 0.056 3.944 10 F -0.132 7.132 11 C 0.078 3.922 12 H 0.178 0.822 13 O -0.342 6.342 14 C 0.273 3.727 15 O -0.426 6.426 16 O -0.255 6.255 17 C 0.000 4.000 18 C -0.129 4.129 19 C -0.012 4.012 20 C -0.580 4.580 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.575 5.575 24 Si 0.792 3.208 25 H -0.190 1.190 26 H -0.211 1.211 27 H -0.189 1.189 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.241 0.759 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.927 -11.889 24.485 30.132 hybrid contribution -0.413 1.602 -0.980 1.923 sum 12.514 -10.287 23.504 28.546 Atomic orbital electron populations 1.22000 0.91136 1.04526 1.03194 1.20583 0.98715 0.99131 0.90599 0.90359 1.19566 0.99717 0.95911 0.95704 1.21199 0.98907 0.92295 0.98464 1.21581 0.97335 1.01635 0.93657 1.21401 0.96569 0.92902 1.00216 1.21388 1.02801 0.96821 0.96842 1.17875 1.00145 0.78921 0.97434 1.91448 1.91189 1.35608 1.94962 1.21803 0.82054 1.01763 0.86554 0.82193 1.86613 1.16375 1.35271 1.95893 1.25422 0.81032 0.77873 0.88399 1.90674 1.57534 1.44197 1.50179 1.86578 1.25352 1.69576 1.44001 1.23170 0.96837 0.95794 0.84232 1.21442 0.90398 1.01719 0.99307 1.18942 0.95670 0.94338 0.92289 1.21597 0.93099 1.34621 1.08681 0.91472 1.26023 1.03895 0.94720 0.95371 1.70095 1.37824 1.36514 1.13045 0.85449 0.78896 0.78769 0.77637 1.18995 1.21103 1.18941 0.91272 0.89829 0.91451 0.83238 0.82573 0.82360 0.83661 0.75894 0.92121 0.92177 0.91181 0.91165 0.98707 0.98694 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.48 71.98 0.61 -2.11 16 2 C -0.07 -1.32 2.31 -11.54 -0.03 -1.35 16 3 H 0.08 1.64 7.13 -2.39 -0.02 1.63 16 4 C -0.11 -1.83 4.44 -19.82 -0.09 -1.92 16 5 C -0.09 -1.15 8.71 22.26 0.19 -0.96 16 6 C -0.12 -1.21 10.04 22.27 0.22 -0.98 16 7 C -0.09 -0.92 10.04 22.26 0.22 -0.70 16 8 C -0.16 -2.22 10.03 22.31 0.22 -1.99 16 9 C 0.08 1.39 7.25 22.37 0.16 1.55 16 10 F -0.15 -3.35 16.19 44.97 0.73 -2.62 16 11 C 0.14 2.84 2.91 29.85 0.09 2.92 16 12 H 0.16 2.52 7.39 -2.39 -0.02 2.50 16 13 O -0.54 -11.73 12.62 -129.94 -1.64 -13.37 16 14 C 0.43 12.21 7.13 71.24 0.51 12.72 16 15 O -0.54 -19.00 16.07 28.40 0.46 -18.54 16 16 O -0.34 -10.10 7.44 -51.43 -0.38 -10.49 16 17 C 0.07 2.62 5.47 71.98 0.39 3.02 16 18 C -0.09 -3.63 5.53 30.60 0.17 -3.46 16 19 C 0.02 1.29 4.97 29.85 0.15 1.44 16 20 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 21 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 22 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 23 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 24 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 28 H 0.07 1.54 5.54 -2.39 -0.01 1.52 16 29 H 0.08 1.19 7.39 -2.38 -0.02 1.18 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.15 1.32 7.10 -2.91 -0.02 1.30 16 32 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.39 7.49 8.79 -74.06 -0.65 6.84 16 36 H 0.06 2.24 8.13 -2.39 -0.02 2.23 16 37 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 38 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -70.31 358.90 5.38 -64.93 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.38 Total: 12.50 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 3.52 Total: -21.50 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.28 Total: -56.53 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.57 Total: -42.40 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.73 Total: -2.62 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.31 5.38 -64.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.899 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds