Wall clock time and date at job start Tue Mar 31 2020 10:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47056 * 2 1 4 4 C 1.50699 * 109.47172 * 239.99821 * 2 1 3 5 5 C 1.38216 * 120.01501 * 300.02415 * 4 2 1 6 6 C 1.38226 * 120.02514 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.38176 * 120.02279 * 359.74109 * 7 6 5 9 9 C 1.38436 * 120.00926 * 119.99778 * 4 2 1 10 10 F 1.35104 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53002 * 109.46986 * 119.99677 * 2 1 3 12 12 H 1.09003 * 109.46879 * 179.97438 * 11 2 1 13 13 O 1.42898 * 109.46980 * 60.00697 * 11 2 1 14 14 C 1.50694 * 109.47447 * 300.00382 * 11 2 1 15 15 O 1.20823 * 120.00213 * 115.00338 * 14 11 2 16 16 O 1.34228 * 119.99693 * 294.99587 * 14 11 2 17 17 C 1.45208 * 116.99902 * 179.97438 * 16 14 11 18 18 C 1.53005 * 109.46987 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.46699 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.46954 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00056 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47352 * 59.99829 * 24 22 20 26 26 H 1.48496 * 109.47163 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47360 * 300.00081 * 24 22 20 28 28 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47235 * 299.99681 * 1 2 3 30 30 H 1.09001 * 109.47308 * 59.99930 * 1 2 3 31 31 H 1.08001 * 119.98628 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 33 33 H 1.07993 * 119.98889 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.01677 * 180.27805 * 8 7 6 35 35 H 0.96705 * 113.99787 * 299.99000 * 13 11 2 36 36 H 1.08999 * 109.46955 * 300.00165 * 17 16 14 37 37 H 1.09001 * 109.46889 * 60.00126 * 17 16 14 38 38 H 1.08999 * 109.47196 * 299.99757 * 18 17 16 39 39 H 1.08998 * 109.46926 * 60.00111 * 18 17 16 40 40 H 1.09004 * 109.47469 * 300.00017 * 19 18 17 41 41 H 1.08998 * 109.47384 * 60.00339 * 19 18 17 42 42 H 0.96994 * 119.99605 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6982 -2.0336 -1.4497 6 6 2.1584 -2.6852 -2.5785 7 6 2.9538 -2.0147 -3.4892 8 6 3.2851 -0.6906 -3.2745 9 6 2.8282 -0.0379 -2.1418 10 9 3.1554 1.2555 -1.9286 11 6 2.0399 -0.7212 1.2493 12 1 3.1300 -0.7216 1.2491 13 8 1.5637 -2.0685 1.2493 14 6 1.5376 -0.0109 2.4797 15 8 0.7704 -0.5684 3.2283 16 8 1.9425 1.2413 2.7441 17 6 1.4176 1.8639 3.9463 18 6 1.9869 3.2779 4.0785 19 6 1.4343 3.9336 5.3456 20 6 1.9944 5.3266 5.4755 21 1 2.6761 5.7064 4.7288 22 6 1.6368 6.1163 6.5477 23 7 0.8071 5.6537 7.4573 24 14 2.3317 7.8427 6.7091 25 1 1.9391 8.6472 5.5243 26 1 1.7953 8.4792 7.9388 27 1 3.8128 7.7744 6.7923 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.0773 -2.5584 -0.7387 32 1 1.8971 -3.7193 -2.7487 33 1 3.3124 -2.5248 -4.3710 34 1 3.9027 -0.1656 -3.9883 35 1 0.5997 -2.1449 1.2493 36 1 0.3306 1.9146 3.8842 37 1 1.7048 1.2734 4.8163 38 1 3.0739 3.2277 4.1404 39 1 1.6993 3.8681 3.2085 40 1 0.3471 3.9839 5.2842 41 1 1.7222 3.3433 6.2154 42 1 0.5552 6.2094 8.2113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870073854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:07 Heat of formation + Delta-G solvation = -178.204956 kcal Electronic energy + Delta-G solvation = -25179.750867 eV Core-core repulsion = 21231.694722 eV Total energy + Delta-G solvation = -3948.056145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.14183 -40.89145 -39.55192 -37.73539 -36.28264 -34.23471 -33.93149 -31.75433 -30.89300 -30.05381 -28.25679 -26.80140 -24.41078 -23.28649 -22.90144 -21.43862 -20.55774 -20.33069 -18.19700 -17.87352 -17.33094 -17.01958 -16.54336 -16.33305 -15.92037 -15.87117 -15.49998 -15.19154 -14.54405 -14.48315 -14.27175 -13.84546 -13.53584 -13.39180 -12.95217 -12.73629 -12.43656 -12.29074 -12.24502 -12.17563 -12.01031 -11.86897 -11.59071 -11.29907 -10.97187 -10.94821 -10.67337 -10.65553 -10.43992 -10.14036 -9.75645 -9.50579 -9.27528 -9.19074 -8.95599 -8.39732 -6.04680 -4.07864 0.79704 0.89412 2.13745 2.68817 3.25788 3.31924 3.36207 3.38880 3.77320 3.94594 4.18079 4.29212 4.42249 4.48326 4.55791 4.67321 4.79377 4.91813 4.94783 5.03717 5.21733 5.31201 5.37311 5.52559 5.53395 5.57348 5.58835 5.73758 5.76823 5.84789 5.96494 6.03415 6.09405 6.40698 6.50694 6.56276 6.77653 6.95207 7.03430 7.57974 7.68824 7.77829 7.93335 8.34263 8.98111 9.56472 11.06738 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.002544 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.359677 B =11003.128785 C =11957.649644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.110 0.890 4 C -0.112 4.112 5 C -0.071 4.071 6 C -0.134 4.134 7 C -0.093 4.093 8 C -0.158 4.158 9 C 0.105 3.895 10 F -0.135 7.135 11 C 0.129 3.871 12 H 0.138 0.862 13 O -0.527 6.527 14 C 0.431 3.569 15 O -0.503 6.503 16 O -0.353 6.353 17 C 0.067 3.933 18 C -0.109 4.109 19 C 0.024 3.976 20 C -0.522 4.522 21 H 0.057 0.943 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.382 0.618 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -17.869 -22.803 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.128 0.872 4 C -0.113 4.113 5 C -0.088 4.088 6 C -0.152 4.152 7 C -0.111 4.111 8 C -0.177 4.177 9 C 0.086 3.914 10 F -0.113 7.113 11 C 0.068 3.932 12 H 0.155 0.845 13 O -0.334 6.334 14 C 0.273 3.727 15 O -0.391 6.391 16 O -0.270 6.270 17 C -0.006 4.006 18 C -0.147 4.147 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.075 0.925 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.061 -18.026 -22.359 28.794 hybrid contribution -0.217 1.355 0.391 1.427 sum 1.844 -16.671 -21.967 27.639 Atomic orbital electron populations 1.21927 0.92938 1.02629 1.03533 1.20699 0.97483 1.01000 0.90817 0.87228 1.19637 1.00067 0.95326 0.96227 1.21158 0.98380 0.92700 0.96602 1.21243 0.98796 1.00500 0.94649 1.21035 0.97150 0.93499 0.99379 1.21135 1.03107 0.96023 0.97391 1.17603 0.98679 0.79184 0.95938 1.91522 1.90870 1.34192 1.94725 1.21493 1.01175 0.82205 0.88343 0.84463 1.86665 1.28069 1.22859 1.95803 1.24454 0.79161 0.81324 0.87781 1.90679 1.33183 1.66519 1.48769 1.86517 1.66642 1.27809 1.46011 1.23556 0.98781 0.95186 0.83037 1.21773 1.00770 0.90313 1.01811 1.19046 0.96515 0.95215 0.90487 1.21131 1.27782 0.98798 1.08341 0.92461 1.25032 0.95117 0.98578 0.95736 1.69955 1.34014 1.37156 1.12256 0.86597 0.79373 0.84265 0.77423 1.20167 1.21256 1.20156 0.91869 0.91590 0.90959 0.84159 0.85354 0.85187 0.84766 0.76773 0.91474 0.91418 0.92072 0.92076 0.96266 0.96240 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.45 37.16 0.31 -1.01 16 2 C -0.08 -0.78 2.50 -91.77 -0.23 -1.01 16 3 H 0.11 1.18 7.13 -51.93 -0.37 0.81 16 4 C -0.11 -1.01 4.79 -104.56 -0.50 -1.51 16 5 C -0.07 -0.54 8.30 -39.59 -0.33 -0.87 16 6 C -0.13 -0.88 10.04 -39.58 -0.40 -1.27 16 7 C -0.09 -0.60 10.04 -39.59 -0.40 -0.99 16 8 C -0.16 -1.24 10.03 -39.51 -0.40 -1.64 16 9 C 0.11 1.02 7.25 -39.42 -0.29 0.74 16 10 F -0.13 -1.52 16.19 2.25 0.04 -1.49 16 11 C 0.13 1.38 3.28 -27.88 -0.09 1.29 16 12 H 0.14 1.38 8.14 -51.93 -0.42 0.95 16 13 O -0.53 -5.16 10.28 -55.14 -0.57 -5.73 16 14 C 0.43 6.23 6.01 36.00 0.22 6.45 16 15 O -0.50 -8.52 16.07 -25.46 -0.41 -8.93 16 16 O -0.35 -5.73 10.21 -39.25 -0.40 -6.13 16 17 C 0.07 1.23 5.47 37.16 0.20 1.43 16 18 C -0.11 -2.25 5.53 -26.73 -0.15 -2.40 16 19 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 20 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 21 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 24 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.06 0.43 6.03 -51.93 -0.31 0.11 16 29 H 0.07 0.68 7.22 -51.93 -0.37 0.30 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.14 0.90 5.51 -52.49 -0.29 0.61 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.38 2.92 6.75 45.56 0.31 3.23 16 36 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 37 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -32.35 356.11 -8.08 -40.43 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.23 Total: -0.17 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.59 Total: -13.82 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.38 Total: -20.79 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.35 -8.08 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.775 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds