Wall clock time and date at job start Tue Mar 31 2020 10:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47056 * 2 1 4 4 C 1.50699 * 109.47172 * 239.99821 * 2 1 3 5 5 C 1.38216 * 120.01501 * 300.02415 * 4 2 1 6 6 C 1.38226 * 120.02514 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.38176 * 120.02279 * 359.74109 * 7 6 5 9 9 C 1.38436 * 120.00926 * 119.99778 * 4 2 1 10 10 F 1.35104 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53002 * 109.46986 * 119.99677 * 2 1 3 12 12 H 1.09003 * 109.46879 * 179.97438 * 11 2 1 13 13 O 1.42898 * 109.46980 * 60.00697 * 11 2 1 14 14 C 1.50694 * 109.47447 * 300.00382 * 11 2 1 15 15 O 1.20823 * 120.00213 * 115.00338 * 14 11 2 16 16 O 1.34228 * 119.99693 * 294.99587 * 14 11 2 17 17 C 1.45208 * 116.99902 * 179.97438 * 16 14 11 18 18 C 1.53005 * 109.46987 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.46699 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.46954 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00056 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47352 * 59.99829 * 24 22 20 26 26 H 1.48496 * 109.47163 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47360 * 300.00081 * 24 22 20 28 28 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47235 * 299.99681 * 1 2 3 30 30 H 1.09001 * 109.47308 * 59.99930 * 1 2 3 31 31 H 1.08001 * 119.98628 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 33 33 H 1.07993 * 119.98889 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.01677 * 180.27805 * 8 7 6 35 35 H 0.96705 * 113.99787 * 299.99000 * 13 11 2 36 36 H 1.08999 * 109.46955 * 300.00165 * 17 16 14 37 37 H 1.09001 * 109.46889 * 60.00126 * 17 16 14 38 38 H 1.08999 * 109.47196 * 299.99757 * 18 17 16 39 39 H 1.08998 * 109.46926 * 60.00111 * 18 17 16 40 40 H 1.09004 * 109.47469 * 300.00017 * 19 18 17 41 41 H 1.08998 * 109.47384 * 60.00339 * 19 18 17 42 42 H 0.96994 * 119.99605 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6982 -2.0336 -1.4497 6 6 2.1584 -2.6852 -2.5785 7 6 2.9538 -2.0147 -3.4892 8 6 3.2851 -0.6906 -3.2745 9 6 2.8282 -0.0379 -2.1418 10 9 3.1554 1.2555 -1.9286 11 6 2.0399 -0.7212 1.2493 12 1 3.1300 -0.7216 1.2491 13 8 1.5637 -2.0685 1.2493 14 6 1.5376 -0.0109 2.4797 15 8 0.7704 -0.5684 3.2283 16 8 1.9425 1.2413 2.7441 17 6 1.4176 1.8639 3.9463 18 6 1.9869 3.2779 4.0785 19 6 1.4343 3.9336 5.3456 20 6 1.9944 5.3266 5.4755 21 1 2.6761 5.7064 4.7288 22 6 1.6368 6.1163 6.5477 23 7 0.8071 5.6537 7.4573 24 14 2.3317 7.8427 6.7091 25 1 1.9391 8.6472 5.5243 26 1 1.7953 8.4792 7.9388 27 1 3.8128 7.7744 6.7923 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.0773 -2.5584 -0.7387 32 1 1.8971 -3.7193 -2.7487 33 1 3.3124 -2.5248 -4.3710 34 1 3.9027 -0.1656 -3.9883 35 1 0.5997 -2.1449 1.2493 36 1 0.3306 1.9146 3.8842 37 1 1.7048 1.2734 4.8163 38 1 3.0739 3.2277 4.1404 39 1 1.6993 3.8681 3.2085 40 1 0.3471 3.9839 5.2842 41 1 1.7222 3.3433 6.2154 42 1 0.5552 6.2094 8.2113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:06 Heat of formation + Delta-G solvation = -195.929364 kcal Electronic energy + Delta-G solvation = -25180.519455 eV Core-core repulsion = 21231.694722 eV Total energy + Delta-G solvation = -3948.824733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.88816 -42.00009 -40.32475 -38.66220 -37.50915 -35.98761 -34.86575 -33.70791 -31.46670 -30.75258 -29.47134 -28.34875 -25.51164 -24.72124 -23.57527 -22.41630 -22.19999 -21.38031 -19.24050 -18.77862 -18.52291 -18.17142 -17.95122 -17.50032 -16.86793 -16.56332 -16.52484 -16.32434 -16.18476 -15.55229 -15.06763 -14.95947 -14.62752 -14.24658 -14.10414 -13.86755 -13.81207 -13.66483 -13.41040 -13.03822 -12.95256 -12.82953 -12.81588 -12.55632 -12.42445 -12.26059 -12.12136 -12.01365 -11.87178 -11.59071 -11.45823 -11.32011 -10.97354 -10.58342 -9.85075 -9.57229 -8.23308 -6.34964 0.20341 0.33022 0.96371 1.40004 1.43583 1.48082 1.52552 2.40072 2.68670 2.96084 3.10448 3.30880 3.41288 3.49277 3.67721 3.78370 3.95247 3.96737 4.00634 4.15016 4.26848 4.36433 4.39228 4.47098 4.50141 4.66522 4.76087 4.81003 4.86714 5.01606 5.04351 5.10694 5.17910 5.27812 5.34021 5.47095 5.47496 5.55657 5.61032 5.78018 6.01093 6.16952 6.28919 6.57490 6.80521 7.34535 8.88692 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.002544 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.359677 B =11003.128785 C =11957.649644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 H 0.093 0.907 4 C -0.120 4.120 5 C -0.076 4.076 6 C -0.131 4.131 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.076 3.924 10 F -0.152 7.152 11 C 0.142 3.858 12 H 0.147 0.853 13 O -0.525 6.525 14 C 0.431 3.569 15 O -0.529 6.529 16 O -0.355 6.355 17 C 0.077 3.923 18 C -0.094 4.094 19 C 0.027 3.973 20 C -0.545 4.545 21 H 0.064 0.936 22 C -0.001 4.001 23 N -0.933 5.933 24 Si 0.969 3.031 25 H -0.266 1.266 26 H -0.283 1.283 27 H -0.266 1.266 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.392 0.608 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.067 0.933 40 H -0.003 1.003 41 H -0.003 1.003 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -18.857 -24.800 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 H 0.112 0.888 4 C -0.121 4.121 5 C -0.094 4.094 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.182 4.182 9 C 0.057 3.943 10 F -0.131 7.131 11 C 0.081 3.919 12 H 0.164 0.836 13 O -0.333 6.333 14 C 0.275 3.725 15 O -0.418 6.418 16 O -0.271 6.271 17 C 0.004 3.996 18 C -0.132 4.132 19 C -0.010 4.010 20 C -0.582 4.582 21 H 0.082 0.918 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.793 3.207 25 H -0.190 1.190 26 H -0.208 1.208 27 H -0.191 1.191 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.811 -19.030 -24.381 31.056 hybrid contribution -0.475 1.536 0.949 1.866 sum 2.336 -17.494 -23.432 29.336 Atomic orbital electron populations 1.21928 0.92334 1.03842 1.02758 1.20576 0.97960 1.00092 0.90701 0.88834 1.19588 1.00675 0.95992 0.95848 1.21353 0.98534 0.92086 0.97415 1.21607 0.97799 1.01635 0.93836 1.21407 0.96316 0.92845 1.00142 1.21386 1.03079 0.96813 0.96955 1.17946 1.00126 0.78880 0.97311 1.91473 1.91217 1.35424 1.94961 1.21519 1.01524 0.82186 0.86680 0.83551 1.86659 1.29159 1.21922 1.95534 1.25334 0.78372 0.80354 0.88450 1.90667 1.34414 1.66789 1.49934 1.86509 1.66720 1.29028 1.44842 1.23165 0.98466 0.94071 0.83940 1.21463 1.00765 0.91540 0.99437 1.18924 0.95220 0.94826 0.92074 1.21589 1.27993 0.99973 1.08694 0.91750 1.26010 0.95342 1.03236 0.95297 1.70091 1.35346 1.38955 1.12920 0.85447 0.78937 0.78656 0.77701 1.19049 1.20848 1.19071 0.89698 0.93517 0.90514 0.83047 0.82774 0.82391 0.83668 0.75572 0.91662 0.91926 0.91569 0.91467 0.98428 0.98511 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.45 71.98 0.61 -1.91 16 2 C -0.07 -1.39 2.50 -11.54 -0.03 -1.42 16 3 H 0.09 2.05 7.13 -2.39 -0.02 2.04 16 4 C -0.12 -2.04 4.79 -19.82 -0.09 -2.13 16 5 C -0.08 -0.98 8.30 22.26 0.18 -0.79 16 6 C -0.13 -1.29 10.04 22.27 0.22 -1.07 16 7 C -0.09 -0.89 10.04 22.26 0.22 -0.66 16 8 C -0.16 -2.31 10.03 22.31 0.22 -2.08 16 9 C 0.08 1.44 7.25 22.38 0.16 1.60 16 10 F -0.15 -3.51 16.19 44.97 0.73 -2.78 16 11 C 0.14 2.90 3.28 29.85 0.10 3.00 16 12 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 13 O -0.52 -9.31 10.28 -129.95 -1.34 -10.65 16 14 C 0.43 12.37 6.01 71.23 0.43 12.80 16 15 O -0.53 -17.85 16.07 28.39 0.46 -17.39 16 16 O -0.35 -11.51 10.21 -51.40 -0.52 -12.04 16 17 C 0.08 2.86 5.47 71.98 0.39 3.25 16 18 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 19 C 0.03 1.42 4.97 29.85 0.15 1.57 16 20 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 21 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 22 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 23 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 24 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.08 1.00 6.03 -2.39 -0.01 0.98 16 29 H 0.05 0.96 7.22 -2.39 -0.02 0.94 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.15 1.52 5.51 -2.91 -0.02 1.51 16 32 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 33 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.39 5.22 6.75 -74.05 -0.50 4.72 16 36 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 37 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -70.07 356.11 5.61 -64.46 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.54 Total: 10.86 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 3.44 Total: -22.02 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.28 Total: -56.72 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.40 Total: -40.08 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.73 Total: -2.78 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.07 5.61 -64.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.467 kcal (2) G-P(sol) polarization free energy of solvation -70.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds