Wall clock time and date at job start Tue Mar 31 2020 10:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 C 1.53007 * 109.47249 * 240.00153 * 2 1 3 5 5 S 1.81399 * 109.47245 * 120.00411 * 2 1 3 6 6 C 1.81395 * 103.00173 * 59.99693 * 5 2 1 7 7 C 1.52999 * 109.47628 * 180.02562 * 6 5 2 8 8 C 1.52995 * 109.47458 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.47187 * 180.02562 * 8 7 6 10 10 C 1.35900 * 117.00011 * 180.02562 * 9 8 7 11 11 C 1.38827 * 120.02115 * 359.72410 * 10 9 8 12 12 C 1.38189 * 120.07765 * 179.72294 * 11 10 9 13 13 C 1.38149 * 120.12438 * 0.55361 * 12 11 10 14 14 C 1.38890 * 120.03979 * 359.72018 * 13 12 11 15 15 O 1.35754 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99505 * 174.48878 * 15 14 13 17 17 H 1.08001 * 120.00214 * 5.05661 * 16 15 14 18 18 C 1.38659 * 119.99788 * 185.05604 * 16 15 14 19 19 N 1.31554 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47077 * 90.00199 * 20 18 16 22 22 H 1.48493 * 109.47220 * 210.00502 * 20 18 16 23 23 H 1.48506 * 109.46953 * 330.00532 * 20 18 16 24 24 C 1.38571 * 120.01894 * 179.97438 * 10 9 8 25 25 H 1.08997 * 109.46850 * 299.99788 * 1 2 3 26 26 H 1.09004 * 109.46835 * 59.99810 * 1 2 3 27 27 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47617 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47484 * 300.00387 * 3 2 1 30 30 H 1.09007 * 109.46892 * 60.00271 * 3 2 1 31 31 H 1.08998 * 109.46895 * 300.00420 * 4 2 1 32 32 H 1.08993 * 109.46861 * 59.99894 * 4 2 1 33 33 H 1.08997 * 109.47154 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47343 * 60.00379 * 6 5 2 35 35 H 1.09005 * 109.47215 * 300.00351 * 6 5 2 36 36 H 1.09002 * 109.47124 * 59.99980 * 7 6 5 37 37 H 1.09005 * 109.46887 * 300.00280 * 7 6 5 38 38 H 1.09002 * 109.47372 * 60.00192 * 8 7 6 39 39 H 1.08996 * 109.47272 * 299.99894 * 8 7 6 40 40 H 1.08005 * 119.95663 * 359.97438 * 11 10 9 41 41 H 1.08008 * 119.93521 * 180.25076 * 12 11 10 42 42 H 1.08003 * 119.97608 * 179.69786 * 13 12 11 43 43 H 0.97005 * 119.99481 * 179.97438 * 19 18 16 44 44 H 1.08003 * 120.06077 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 2.1347 -0.8552 1.4810 6 6 1.4375 -2.5204 1.3040 7 6 1.8624 -3.3808 2.4957 8 6 1.2738 -4.7851 2.3466 9 8 1.6702 -5.5884 3.4601 10 6 1.2289 -6.8736 3.4818 11 6 0.4256 -7.3496 2.4545 12 6 -0.0191 -8.6579 2.4725 13 6 0.3248 -9.4927 3.5182 14 6 1.1236 -9.0201 4.5514 15 8 1.4610 -9.8404 5.5792 16 6 2.3299 -9.3557 6.4891 17 1 2.6611 -8.3296 6.4266 18 6 2.7984 -10.1747 7.5052 19 7 2.3954 -11.4247 7.5810 20 14 4.0028 -9.5036 8.7654 21 1 3.2521 -8.9305 9.9113 22 1 4.8787 -10.6018 9.2470 23 1 4.8352 -8.4448 8.1397 24 6 1.5763 -7.7082 4.5320 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 1.8031 -2.9713 0.3814 35 1 0.3497 -2.4574 1.2713 36 1 1.4964 -2.9299 3.4182 37 1 2.9501 -3.4439 2.5287 38 1 1.6393 -5.2363 1.4242 39 1 0.1862 -4.7216 2.3139 40 1 0.1512 -6.6977 1.6382 41 1 -0.6407 -9.0270 1.6701 42 1 -0.0281 -10.5133 3.5323 43 1 2.7234 -11.9978 8.2916 44 1 2.1982 -7.3385 5.3339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871756739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:30 Heat of formation + Delta-G solvation = -62.849469 kcal Electronic energy + Delta-G solvation = -22204.741147 eV Core-core repulsion = 18827.900367 eV Total energy + Delta-G solvation = -3376.840780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.63759 -38.17326 -36.71204 -35.82494 -34.04875 -32.25368 -29.72937 -28.64500 -28.02363 -27.84202 -26.38864 -25.33863 -22.49970 -21.77506 -20.98760 -20.67288 -18.30044 -17.61892 -16.54767 -16.31113 -15.87390 -15.47308 -15.19601 -14.74967 -14.73646 -14.64913 -14.54947 -14.27372 -13.56008 -13.45224 -13.07555 -12.93388 -12.88116 -12.63647 -12.35717 -12.25909 -12.03271 -11.96315 -11.63754 -11.57988 -11.54066 -11.19443 -11.04962 -10.95942 -10.92383 -10.52537 -10.36706 -10.25289 -10.04957 -9.43932 -8.83251 -7.97136 -7.71559 -7.25974 -6.45278 -4.04558 1.28065 2.21365 2.22152 2.33344 3.15296 3.16321 3.21488 3.50226 3.98451 4.25444 4.26256 4.53258 4.57356 4.60633 4.77421 4.91166 5.04268 5.07951 5.10423 5.10997 5.21483 5.25118 5.26193 5.30810 5.33089 5.33703 5.34443 5.55478 5.59645 5.73077 5.73780 5.76511 5.81166 5.91872 6.12463 6.27434 6.40009 6.66866 7.01798 7.09435 7.21914 7.42479 7.56427 8.00058 8.04760 9.00482 9.67957 10.72319 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002255 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.850648 B =12415.873135 C =13540.154552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.128 4.128 4 C -0.145 4.145 5 S -0.247 6.247 6 C -0.083 4.083 7 C -0.104 4.104 8 C 0.070 3.930 9 O -0.318 6.318 10 C 0.167 3.833 11 C -0.298 4.298 12 C -0.044 4.044 13 C -0.220 4.220 14 C 0.183 3.817 15 O -0.171 6.171 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.266 1.266 24 C -0.265 4.265 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.270 0.730 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 21.461 -16.278 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.186 4.186 4 C -0.204 4.204 5 S -0.018 6.018 6 C -0.231 4.231 7 C -0.143 4.143 8 C -0.007 4.007 9 O -0.233 6.233 10 C 0.122 3.878 11 C -0.318 4.318 12 C -0.063 4.063 13 C -0.240 4.240 14 C 0.129 3.871 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.285 4.285 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.934 21.535 -15.093 26.368 hybrid contribution -0.329 -0.173 -0.581 0.690 sum -2.264 21.361 -15.674 26.592 Atomic orbital electron populations 1.22140 0.92734 1.02543 1.02942 1.22690 0.98356 0.98469 0.95086 1.21656 1.01835 0.92433 1.02692 1.22141 1.02181 1.00104 0.95938 1.86947 1.70774 1.10688 1.33371 1.23270 1.03309 0.94546 1.02012 1.21202 1.02762 0.92610 0.97698 1.22547 0.99118 0.89987 0.89094 1.85994 1.71330 1.21173 1.44762 1.18629 0.92765 0.82222 0.94151 1.20626 1.10846 0.98215 1.02065 1.20399 0.96886 0.92543 0.96445 1.20158 1.07246 1.00855 0.95728 1.19027 0.91655 0.88644 0.87807 1.84003 1.55219 1.38382 1.29735 1.21388 1.21956 0.97984 1.05535 0.88820 1.25308 0.98024 0.95138 0.97988 1.70044 1.41934 1.05436 1.32190 0.85696 0.79392 0.78503 0.79803 1.19816 1.20234 1.19057 1.20333 1.12405 0.93927 1.01804 0.91286 0.91705 0.92374 0.91631 0.91180 0.91637 0.92377 0.91701 0.91285 0.89738 0.89745 0.89870 0.89862 0.92224 0.92232 0.87199 0.86773 0.86350 0.91976 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.32 37.16 0.31 -0.58 16 2 C -0.04 -0.25 0.95 -90.62 -0.09 -0.34 16 3 C -0.13 -0.77 8.48 37.16 0.32 -0.45 16 4 C -0.14 -0.89 8.32 37.16 0.31 -0.59 16 5 S -0.25 -2.33 20.65 -107.50 -2.22 -4.55 16 6 C -0.08 -0.72 5.05 37.16 0.19 -0.53 16 7 C -0.10 -1.13 5.59 -26.73 -0.15 -1.28 16 8 C 0.07 0.89 4.74 37.16 0.18 1.07 16 9 O -0.32 -5.68 10.13 -19.43 -0.20 -5.88 16 10 C 0.17 3.35 6.68 -39.24 -0.26 3.09 16 11 C -0.30 -5.32 9.04 -39.38 -0.36 -5.68 16 12 C -0.04 -0.80 10.03 -39.63 -0.40 -1.20 16 13 C -0.22 -4.74 9.99 -39.37 -0.39 -5.13 16 14 C 0.18 4.55 6.64 -39.13 -0.26 4.29 16 15 O -0.17 -4.93 9.76 0.02 0.00 -4.93 16 16 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 17 H 0.09 2.50 5.20 -52.49 -0.27 2.23 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C -0.26 -6.14 9.10 -39.25 -0.36 -6.50 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 6.68 -51.93 -0.35 0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 6.68 -51.93 -0.35 0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.66 7.00 -51.92 -0.36 0.30 16 35 H 0.08 0.66 7.00 -51.92 -0.36 0.30 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 39 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 40 H 0.11 1.61 6.29 -52.48 -0.33 1.28 16 41 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 3.20 5.64 -52.48 -0.30 2.90 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -31.20 370.52 -8.77 -39.97 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.90 Total: 2.27 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -0.77 Total: -23.68 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.76 Total: -24.60 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.20 Total: -10.81 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.22 Total: -4.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.20 -8.77 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871756739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.881 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds