Wall clock time and date at job start Tue Mar 31 2020 10:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 C 1.53007 * 109.47249 * 240.00153 * 2 1 3 5 5 S 1.81399 * 109.47245 * 120.00411 * 2 1 3 6 6 C 1.81395 * 103.00173 * 59.99693 * 5 2 1 7 7 C 1.52999 * 109.47628 * 180.02562 * 6 5 2 8 8 C 1.52995 * 109.47458 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.47187 * 180.02562 * 8 7 6 10 10 C 1.35900 * 117.00011 * 180.02562 * 9 8 7 11 11 C 1.38827 * 120.02115 * 359.72410 * 10 9 8 12 12 C 1.38189 * 120.07765 * 179.72294 * 11 10 9 13 13 C 1.38149 * 120.12438 * 0.55361 * 12 11 10 14 14 C 1.38890 * 120.03979 * 359.72018 * 13 12 11 15 15 O 1.35754 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99505 * 174.48878 * 15 14 13 17 17 H 1.08001 * 120.00214 * 5.05661 * 16 15 14 18 18 C 1.38659 * 119.99788 * 185.05604 * 16 15 14 19 19 N 1.31554 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47077 * 90.00199 * 20 18 16 22 22 H 1.48493 * 109.47220 * 210.00502 * 20 18 16 23 23 H 1.48506 * 109.46953 * 330.00532 * 20 18 16 24 24 C 1.38571 * 120.01894 * 179.97438 * 10 9 8 25 25 H 1.08997 * 109.46850 * 299.99788 * 1 2 3 26 26 H 1.09004 * 109.46835 * 59.99810 * 1 2 3 27 27 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47617 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47484 * 300.00387 * 3 2 1 30 30 H 1.09007 * 109.46892 * 60.00271 * 3 2 1 31 31 H 1.08998 * 109.46895 * 300.00420 * 4 2 1 32 32 H 1.08993 * 109.46861 * 59.99894 * 4 2 1 33 33 H 1.08997 * 109.47154 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47343 * 60.00379 * 6 5 2 35 35 H 1.09005 * 109.47215 * 300.00351 * 6 5 2 36 36 H 1.09002 * 109.47124 * 59.99980 * 7 6 5 37 37 H 1.09005 * 109.46887 * 300.00280 * 7 6 5 38 38 H 1.09002 * 109.47372 * 60.00192 * 8 7 6 39 39 H 1.08996 * 109.47272 * 299.99894 * 8 7 6 40 40 H 1.08005 * 119.95663 * 359.97438 * 11 10 9 41 41 H 1.08008 * 119.93521 * 180.25076 * 12 11 10 42 42 H 1.08003 * 119.97608 * 179.69786 * 13 12 11 43 43 H 0.97005 * 119.99481 * 179.97438 * 19 18 16 44 44 H 1.08003 * 120.06077 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 2.1347 -0.8552 1.4810 6 6 1.4375 -2.5204 1.3040 7 6 1.8624 -3.3808 2.4957 8 6 1.2738 -4.7851 2.3466 9 8 1.6702 -5.5884 3.4601 10 6 1.2289 -6.8736 3.4818 11 6 0.4256 -7.3496 2.4545 12 6 -0.0191 -8.6579 2.4725 13 6 0.3248 -9.4927 3.5182 14 6 1.1236 -9.0201 4.5514 15 8 1.4610 -9.8404 5.5792 16 6 2.3299 -9.3557 6.4891 17 1 2.6611 -8.3296 6.4266 18 6 2.7984 -10.1747 7.5052 19 7 2.3954 -11.4247 7.5810 20 14 4.0028 -9.5036 8.7654 21 1 3.2521 -8.9305 9.9113 22 1 4.8787 -10.6018 9.2470 23 1 4.8352 -8.4448 8.1397 24 6 1.5763 -7.7082 4.5320 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 1.8031 -2.9713 0.3814 35 1 0.3497 -2.4574 1.2713 36 1 1.4964 -2.9299 3.4182 37 1 2.9501 -3.4439 2.5287 38 1 1.6393 -5.2363 1.4242 39 1 0.1862 -4.7216 2.3139 40 1 0.1512 -6.6977 1.6382 41 1 -0.6407 -9.0270 1.6701 42 1 -0.0281 -10.5133 3.5323 43 1 2.7234 -11.9978 8.2916 44 1 2.1982 -7.3385 5.3339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871756739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:30 Heat of formation + Delta-G solvation = -79.618438 kcal Electronic energy + Delta-G solvation = -22205.468304 eV Core-core repulsion = 18827.900367 eV Total energy + Delta-G solvation = -3377.567937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21835 -39.85439 -37.45120 -37.19906 -35.04254 -34.27785 -31.30197 -30.32181 -28.62883 -28.29645 -27.35940 -27.29247 -23.75427 -23.28400 -22.26448 -21.37853 -20.00706 -19.44599 -17.57931 -17.35085 -17.04342 -16.88133 -16.77478 -16.04533 -15.91105 -15.75654 -15.30984 -15.17592 -15.13720 -14.92542 -14.58978 -14.12120 -13.58290 -13.54617 -13.47648 -13.36899 -13.06033 -12.96671 -12.79261 -12.63720 -12.60300 -12.22810 -12.17880 -12.15300 -12.02616 -11.98105 -11.69514 -11.54661 -11.34551 -10.80620 -10.66829 -9.39699 -8.96286 -8.69232 -8.50113 -6.19076 0.57125 0.62790 0.67143 1.33767 1.42818 1.51272 1.59387 2.15405 2.25334 2.79096 3.12772 3.47867 3.75364 3.77325 3.79371 3.91351 3.93589 4.09582 4.14525 4.23496 4.24862 4.35981 4.44270 4.50901 4.59999 4.62882 4.68606 4.78392 4.81540 4.86230 4.87783 4.88612 4.92009 5.01274 5.07591 5.09509 5.14795 5.26911 5.29189 5.41454 5.60540 5.64683 5.93708 6.00452 6.56469 6.94428 7.71629 8.72406 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002255 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.850648 B =12415.873135 C =13540.154552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 C -0.128 4.128 4 C -0.144 4.144 5 S -0.301 6.301 6 C -0.068 4.068 7 C -0.097 4.097 8 C 0.061 3.939 9 O -0.335 6.335 10 C 0.168 3.832 11 C -0.273 4.273 12 C -0.028 4.028 13 C -0.237 4.237 14 C 0.149 3.851 15 O -0.222 6.222 16 C -0.416 4.416 17 H 0.097 0.903 18 C -0.019 4.019 19 N -0.915 5.915 20 Si 1.017 2.983 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.258 1.258 24 C -0.287 4.287 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.120 0.880 43 H 0.274 0.726 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 23.784 -19.279 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.186 4.186 4 C -0.202 4.202 5 S -0.072 6.072 6 C -0.216 4.216 7 C -0.136 4.136 8 C -0.015 4.015 9 O -0.250 6.250 10 C 0.123 3.877 11 C -0.292 4.292 12 C -0.045 4.045 13 C -0.256 4.256 14 C 0.098 3.902 15 O -0.128 6.128 16 C -0.492 4.492 17 H 0.114 0.886 18 C -0.217 4.217 19 N -0.553 5.553 20 Si 0.836 3.164 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.182 1.182 24 C -0.307 4.307 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.897 23.903 -18.145 30.149 hybrid contribution -0.170 -0.639 0.015 0.661 sum -3.066 23.264 -18.131 29.653 Atomic orbital electron populations 1.22133 0.91918 1.02762 1.03413 1.22779 0.98858 0.98358 0.93552 1.21679 1.01499 0.92103 1.03321 1.22134 1.01801 1.00269 0.96026 1.87172 1.71702 1.12227 1.36139 1.23157 1.03946 0.93285 1.01259 1.21122 1.01975 0.92053 0.98429 1.22939 1.00543 0.89913 0.88092 1.85991 1.71395 1.20357 1.47231 1.18661 0.92532 0.82948 0.93588 1.21192 1.07755 0.98543 1.01702 1.20956 0.95684 0.91982 0.95922 1.20476 1.07168 1.01869 0.96075 1.19589 0.93064 0.89271 0.88293 1.83962 1.57125 1.40179 1.31578 1.21780 1.22664 0.98471 1.06327 0.88615 1.26561 0.99842 0.95365 0.99940 1.70171 1.44302 1.07086 1.33751 0.84613 0.76829 0.78148 0.76791 1.18654 1.19080 1.18153 1.20334 1.13144 0.94310 1.02929 0.91950 0.90084 0.92266 0.92239 0.89241 0.92237 0.92273 0.90079 0.91961 0.88422 0.88407 0.90950 0.90976 0.90293 0.90257 0.82437 0.81749 0.86205 0.91652 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.32 71.98 0.60 -0.77 16 2 C -0.03 -0.30 0.95 -10.79 -0.01 -0.31 16 3 C -0.13 -1.30 8.48 71.98 0.61 -0.69 16 4 C -0.14 -1.38 8.32 71.98 0.60 -0.78 16 5 S -0.30 -5.30 20.65 -56.49 -1.17 -6.46 16 6 C -0.07 -1.00 5.05 71.98 0.36 -0.64 16 7 C -0.10 -1.92 5.59 30.59 0.17 -1.75 16 8 C 0.06 1.34 4.74 71.98 0.34 1.68 16 9 O -0.34 -11.38 10.13 -92.42 -0.94 -12.32 16 10 C 0.17 6.47 6.68 22.49 0.15 6.62 16 11 C -0.27 -8.53 9.04 22.40 0.20 -8.33 16 12 C -0.03 -0.89 10.03 22.24 0.22 -0.67 16 13 C -0.24 -10.08 9.99 22.41 0.22 -9.86 16 14 C 0.15 7.71 6.64 22.56 0.15 7.86 16 15 O -0.22 -13.73 9.76 -22.85 -0.22 -13.96 16 16 C -0.42 -25.16 9.49 67.92 0.64 -24.51 16 17 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 18 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 19 N -0.92 -56.74 13.67 21.61 0.30 -56.45 16 20 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 C -0.29 -13.73 9.10 22.48 0.20 -13.53 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.55 6.68 -2.39 -0.02 0.54 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.56 6.68 -2.39 -0.02 0.54 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 1.19 7.00 -2.39 -0.02 1.17 16 35 H 0.10 1.19 7.00 -2.39 -0.02 1.17 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 1.47 7.67 -2.39 -0.02 1.45 16 39 H 0.08 1.46 7.65 -2.39 -0.02 1.45 16 40 H 0.16 3.49 6.29 -2.91 -0.02 3.47 16 41 H 0.17 3.74 8.06 -2.91 -0.02 3.71 16 42 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 43 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.11 5.78 5.64 -2.91 -0.02 5.76 16 Total: -1.00 -73.69 370.52 5.91 -67.78 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.98 Total: 21.44 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 4.94 Total: -46.32 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.30 Total: -56.45 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.16 Total: -26.28 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.17 Total: -6.46 kcal Total: -73.69 5.91 -67.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871756739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.837 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds