Wall clock time and date at job start Tue Mar 31 2020 10:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47126 * 2 1 4 4 O 1.42904 * 109.47147 * 119.99666 * 2 1 3 5 5 C 1.35949 * 116.99997 * 58.97284 * 4 2 1 6 6 C 1.38705 * 120.02968 * 6.20300 * 5 4 2 7 7 C 1.38148 * 119.97017 * 180.25588 * 6 5 4 8 8 C 1.38453 * 120.03019 * 359.46157 * 7 6 5 9 9 F 1.35099 * 119.97324 * 180.29932 * 8 7 6 10 10 C 1.38461 * 120.05729 * 0.28703 * 8 7 6 11 11 C 1.38144 * 120.03039 * 359.96798 * 10 8 7 12 12 C 1.50701 * 109.47186 * 239.99936 * 2 1 3 13 13 O 1.20824 * 119.99632 * 239.99928 * 12 2 1 14 14 O 1.34228 * 119.99909 * 59.99835 * 12 2 1 15 15 C 1.45196 * 116.99678 * 179.97438 * 14 12 2 16 16 C 1.53009 * 109.46972 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47231 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47085 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00355 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99811 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47184 * 90.00117 * 22 20 18 24 24 H 1.48501 * 109.47453 * 210.00297 * 22 20 18 25 25 H 1.48504 * 109.47377 * 330.00285 * 22 20 18 26 26 H 1.09002 * 109.47275 * 311.94580 * 1 2 3 27 27 H 1.08997 * 109.47133 * 71.95228 * 1 2 3 28 28 H 1.09005 * 109.46585 * 191.94816 * 1 2 3 29 29 H 1.08995 * 109.47532 * 175.25562 * 3 2 1 30 30 H 1.08996 * 109.46815 * 295.25532 * 3 2 1 31 31 H 1.09003 * 109.47250 * 55.25302 * 3 2 1 32 32 H 1.08005 * 120.01629 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.98509 * 179.74636 * 7 6 5 34 34 H 1.07998 * 119.98108 * 179.97438 * 10 8 7 35 35 H 1.08001 * 120.01498 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47259 * 299.99453 * 15 14 12 37 37 H 1.08997 * 109.47300 * 60.00127 * 15 14 12 38 38 H 1.08994 * 109.46974 * 300.00135 * 16 15 14 39 39 H 1.09006 * 109.46817 * 60.00281 * 16 15 14 40 40 H 1.09001 * 109.47110 * 300.00651 * 17 16 15 41 41 H 1.09002 * 109.46904 * 59.99494 * 17 16 15 42 42 H 0.96999 * 120.00542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6234 -1.9675 1.3321 6 6 0.9148 -2.6150 0.3308 7 6 0.5217 -3.9282 0.5023 8 6 0.8444 -4.6016 1.6682 9 9 0.4646 -5.8877 1.8321 10 6 1.5563 -3.9580 2.6663 11 6 1.9460 -2.6432 2.4997 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1195 14 8 1.7080 -0.2519 -2.4496 15 6 2.2277 -0.9858 -3.5896 16 6 1.7555 -0.3193 -4.8834 17 6 2.3036 -1.0922 -6.0847 18 6 1.8390 -0.4355 -7.3589 19 1 1.2156 0.4454 -7.3163 20 6 2.2108 -0.9586 -8.5793 21 7 2.9704 -2.0308 -8.6313 22 14 1.6344 -0.1449 -10.1589 23 1 2.6235 0.8809 -10.5768 24 1 1.5041 -1.1703 -11.2250 25 1 0.3172 0.5018 -9.9305 26 1 -0.3634 0.6869 0.7644 27 1 -0.3633 0.3184 -0.9771 28 1 -0.3633 -1.0055 0.2128 29 1 3.1266 1.4438 0.0850 30 1 1.7477 1.9311 -0.9294 31 1 1.6089 1.9803 0.8444 32 1 0.6671 -2.0916 -0.5809 33 1 -0.0337 -4.4313 -0.2755 34 1 1.8070 -4.4843 3.5754 35 1 2.5017 -2.1416 3.2782 36 1 3.3172 -0.9845 -3.5565 37 1 1.8643 -2.0128 -3.5568 38 1 0.6661 -0.3209 -4.9162 39 1 2.1186 0.7080 -4.9164 40 1 3.3931 -1.0904 -6.0516 41 1 1.9410 -2.1197 -6.0518 42 1 3.2316 -2.3991 -9.4898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912956680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:52 Heat of formation + Delta-G solvation = -144.197148 kcal Electronic energy + Delta-G solvation = -25525.614863 eV Core-core repulsion = 21579.033408 eV Total energy + Delta-G solvation = -3946.581456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.96326 -41.76809 -39.62512 -37.76891 -36.46599 -34.28232 -33.69695 -31.72602 -31.43191 -29.71014 -27.71493 -27.27728 -24.70379 -23.59048 -22.93933 -22.53245 -20.66313 -20.35841 -18.59833 -17.82363 -17.37080 -16.94815 -16.54118 -16.47212 -16.09958 -15.69652 -15.05957 -14.89205 -14.50833 -14.32314 -14.18115 -13.97046 -13.61538 -13.46847 -13.03772 -12.83662 -12.58414 -12.56613 -12.36283 -12.28443 -12.17471 -11.93248 -11.82570 -11.24900 -11.08744 -10.99080 -10.72868 -10.69629 -10.49408 -10.32847 -9.81687 -9.56504 -9.33333 -9.22044 -8.43361 -8.26331 -6.07865 -4.11393 0.94370 1.00435 2.00634 2.43012 2.75954 3.27863 3.34333 3.35526 3.37361 4.11919 4.25702 4.29886 4.36835 4.48161 4.50149 4.53542 4.87632 4.99791 5.13636 5.18939 5.25408 5.28131 5.32347 5.42784 5.46131 5.50447 5.62118 5.69534 5.73481 5.89456 5.90194 5.91433 5.99968 6.31142 6.42984 6.44358 6.70144 6.89260 6.96962 7.54193 7.64440 7.67005 7.89768 8.30246 8.94779 9.53254 11.03514 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.002791 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.139508 B =10031.071261 C =11110.307581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.125 3.875 3 C -0.136 4.136 4 O -0.282 6.282 5 C 0.127 3.873 6 C -0.157 4.157 7 C -0.116 4.116 8 C 0.061 3.939 9 F -0.142 7.142 10 C -0.118 4.118 11 C -0.122 4.122 12 C 0.430 3.570 13 O -0.489 6.489 14 O -0.350 6.350 15 C 0.066 3.934 16 C -0.108 4.108 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 2.779 24.039 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.085 3.915 3 C -0.193 4.193 4 O -0.196 6.196 5 C 0.082 3.918 6 C -0.176 4.176 7 C -0.134 4.134 8 C 0.042 3.958 9 F -0.121 7.121 10 C -0.137 4.137 11 C -0.140 4.140 12 C 0.271 3.729 13 O -0.376 6.376 14 O -0.267 6.267 15 C -0.006 4.006 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.778 2.424 24.018 24.608 hybrid contribution -0.184 -0.188 -1.266 1.293 sum -4.962 2.236 22.752 23.394 Atomic orbital electron populations 1.22813 0.91496 1.05181 1.05619 1.21462 0.95914 0.93428 0.80673 1.21851 1.03016 0.89500 1.04940 1.86249 1.70301 1.22350 1.40693 1.18840 0.94853 0.83876 0.94187 1.21340 1.01579 0.95683 0.98977 1.20953 1.01102 0.94545 0.96838 1.17555 1.02181 0.79736 0.96360 1.91486 1.89741 1.35011 1.95868 1.20890 0.99056 0.94586 0.99182 1.20186 1.03535 0.93782 0.96522 1.24080 0.78862 0.83580 0.86351 1.90775 1.34685 1.24994 1.87148 1.86495 1.69377 1.56126 1.14675 1.23603 0.99081 0.95587 0.82356 1.21777 1.01166 1.00396 0.91215 1.19051 0.96554 0.95386 0.90310 1.21150 1.31825 1.12503 0.90631 0.92409 1.25031 0.95073 0.94983 0.99353 1.69957 1.36036 1.21736 1.25539 0.86544 0.79165 0.79092 0.82914 1.20584 1.21163 1.19792 0.89581 0.88834 0.89973 0.90683 0.88470 0.89802 0.84846 0.84409 0.84091 0.84130 0.91302 0.91418 0.92071 0.92030 0.96236 0.96243 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 8.15 37.16 0.30 -1.37 16 2 C 0.13 1.36 1.05 -91.77 -0.10 1.27 16 3 C -0.14 -1.13 8.79 37.16 0.33 -0.81 16 4 O -0.28 -3.39 9.63 -39.53 -0.38 -3.77 16 5 C 0.13 1.56 5.53 -39.24 -0.22 1.34 16 6 C -0.16 -1.99 5.53 -39.44 -0.22 -2.21 16 7 C -0.12 -1.39 10.02 -39.54 -0.40 -1.79 16 8 C 0.06 0.71 7.30 -39.42 -0.29 0.43 16 9 F -0.14 -1.73 17.27 2.25 0.04 -1.70 16 10 C -0.12 -1.19 10.02 -39.53 -0.40 -1.58 16 11 C -0.12 -1.26 9.98 -39.44 -0.39 -1.66 16 12 C 0.43 6.22 4.64 36.01 0.17 6.38 16 13 O -0.49 -8.51 13.56 -25.48 -0.35 -8.86 16 14 O -0.35 -5.33 9.72 -39.25 -0.38 -5.71 16 15 C 0.07 1.17 5.47 37.16 0.20 1.37 16 16 C -0.11 -2.14 5.53 -26.73 -0.15 -2.29 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.09 0.78 7.83 -51.93 -0.41 0.37 16 28 H 0.08 0.75 4.85 -51.93 -0.25 0.50 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.75 8.00 -51.93 -0.42 0.34 16 31 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.13 1.73 3.85 -52.48 -0.20 1.53 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.76 353.75 -7.61 -39.37 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.88 Total: -1.41 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.70 Total: -13.70 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.11 Total: -18.34 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.76 -7.61 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.827 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds