Wall clock time and date at job start Tue Mar 31 2020 10:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47126 * 2 1 4 4 O 1.42904 * 109.47147 * 119.99666 * 2 1 3 5 5 C 1.35949 * 116.99997 * 58.97284 * 4 2 1 6 6 C 1.38705 * 120.02968 * 6.20300 * 5 4 2 7 7 C 1.38148 * 119.97017 * 180.25588 * 6 5 4 8 8 C 1.38453 * 120.03019 * 359.46157 * 7 6 5 9 9 F 1.35099 * 119.97324 * 180.29932 * 8 7 6 10 10 C 1.38461 * 120.05729 * 0.28703 * 8 7 6 11 11 C 1.38144 * 120.03039 * 359.96798 * 10 8 7 12 12 C 1.50701 * 109.47186 * 239.99936 * 2 1 3 13 13 O 1.20824 * 119.99632 * 239.99928 * 12 2 1 14 14 O 1.34228 * 119.99909 * 59.99835 * 12 2 1 15 15 C 1.45196 * 116.99678 * 179.97438 * 14 12 2 16 16 C 1.53009 * 109.46972 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47231 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47085 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00355 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99811 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47184 * 90.00117 * 22 20 18 24 24 H 1.48501 * 109.47453 * 210.00297 * 22 20 18 25 25 H 1.48504 * 109.47377 * 330.00285 * 22 20 18 26 26 H 1.09002 * 109.47275 * 311.94580 * 1 2 3 27 27 H 1.08997 * 109.47133 * 71.95228 * 1 2 3 28 28 H 1.09005 * 109.46585 * 191.94816 * 1 2 3 29 29 H 1.08995 * 109.47532 * 175.25562 * 3 2 1 30 30 H 1.08996 * 109.46815 * 295.25532 * 3 2 1 31 31 H 1.09003 * 109.47250 * 55.25302 * 3 2 1 32 32 H 1.08005 * 120.01629 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.98509 * 179.74636 * 7 6 5 34 34 H 1.07998 * 119.98108 * 179.97438 * 10 8 7 35 35 H 1.08001 * 120.01498 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47259 * 299.99453 * 15 14 12 37 37 H 1.08997 * 109.47300 * 60.00127 * 15 14 12 38 38 H 1.08994 * 109.46974 * 300.00135 * 16 15 14 39 39 H 1.09006 * 109.46817 * 60.00281 * 16 15 14 40 40 H 1.09001 * 109.47110 * 300.00651 * 17 16 15 41 41 H 1.09002 * 109.46904 * 59.99494 * 17 16 15 42 42 H 0.96999 * 120.00542 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6234 -1.9675 1.3321 6 6 0.9148 -2.6150 0.3308 7 6 0.5217 -3.9282 0.5023 8 6 0.8444 -4.6016 1.6682 9 9 0.4646 -5.8877 1.8321 10 6 1.5563 -3.9580 2.6663 11 6 1.9460 -2.6432 2.4997 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1195 14 8 1.7080 -0.2519 -2.4496 15 6 2.2277 -0.9858 -3.5896 16 6 1.7555 -0.3193 -4.8834 17 6 2.3036 -1.0922 -6.0847 18 6 1.8390 -0.4355 -7.3589 19 1 1.2156 0.4454 -7.3163 20 6 2.2108 -0.9586 -8.5793 21 7 2.9704 -2.0308 -8.6313 22 14 1.6344 -0.1449 -10.1589 23 1 2.6235 0.8809 -10.5768 24 1 1.5041 -1.1703 -11.2250 25 1 0.3172 0.5018 -9.9305 26 1 -0.3634 0.6869 0.7644 27 1 -0.3633 0.3184 -0.9771 28 1 -0.3633 -1.0055 0.2128 29 1 3.1266 1.4438 0.0850 30 1 1.7477 1.9311 -0.9294 31 1 1.6089 1.9803 0.8444 32 1 0.6671 -2.0916 -0.5809 33 1 -0.0337 -4.4313 -0.2755 34 1 1.8070 -4.4843 3.5754 35 1 2.5017 -2.1416 3.2782 36 1 3.3172 -0.9845 -3.5565 37 1 1.8643 -2.0128 -3.5568 38 1 0.6661 -0.3209 -4.9162 39 1 2.1186 0.7080 -4.9164 40 1 3.3931 -1.0904 -6.0516 41 1 1.9410 -2.1197 -6.0518 42 1 3.2316 -2.3991 -9.4898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912956680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:51 Heat of formation + Delta-G solvation = -160.235167 kcal Electronic energy + Delta-G solvation = -25526.310324 eV Core-core repulsion = 21579.033408 eV Total energy + Delta-G solvation = -3947.276917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88659 -42.78109 -40.71169 -38.67828 -37.75290 -36.01801 -34.74846 -33.59648 -32.29011 -30.57284 -29.10231 -28.39267 -26.00238 -24.88245 -23.93275 -23.65608 -22.21548 -21.57123 -19.62284 -18.82819 -18.69232 -18.23559 -17.91114 -17.64551 -17.26872 -16.62212 -16.50901 -16.11021 -15.80188 -15.51465 -15.31935 -14.91782 -14.51649 -14.41960 -14.23090 -13.94318 -13.90210 -13.83951 -13.45489 -13.35564 -13.17891 -13.07413 -12.87947 -12.77025 -12.53254 -12.41127 -12.14128 -12.04498 -11.88123 -11.73023 -11.46619 -11.36259 -11.18442 -10.58825 -10.19307 -9.16873 -8.23085 -6.34840 0.08557 0.10999 0.86983 1.30876 1.41656 1.42453 1.53838 1.87147 2.40181 2.48039 3.11111 3.24088 3.30513 3.50933 3.51709 3.64709 3.70395 3.94083 3.99229 4.04600 4.19039 4.35008 4.36216 4.55537 4.58363 4.68016 4.72550 4.76212 4.80526 4.83531 5.02967 5.04767 5.05598 5.06678 5.07770 5.18974 5.28861 5.47397 5.57892 5.61112 5.78411 6.07118 6.17057 6.48486 6.81418 7.35064 8.89120 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.002791 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.139508 B =10031.071261 C =11110.307581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.127 3.873 3 C -0.135 4.135 4 O -0.285 6.285 5 C 0.112 3.888 6 C -0.170 4.170 7 C -0.129 4.129 8 C 0.046 3.954 9 F -0.148 7.148 10 C -0.110 4.110 11 C -0.119 4.119 12 C 0.428 3.572 13 O -0.522 6.522 14 O -0.343 6.343 15 C 0.077 3.923 16 C -0.092 4.092 17 C 0.025 3.975 18 C -0.542 4.542 19 H 0.067 0.933 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.260 1.260 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.070 0.930 40 H -0.005 1.005 41 H -0.005 1.005 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 4.601 25.340 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.087 3.913 3 C -0.192 4.192 4 O -0.199 6.199 5 C 0.068 3.932 6 C -0.189 4.189 7 C -0.148 4.148 8 C 0.027 3.973 9 F -0.126 7.126 10 C -0.128 4.128 11 C -0.138 4.138 12 C 0.272 3.728 13 O -0.412 6.412 14 O -0.259 6.259 15 C 0.003 3.997 16 C -0.129 4.129 17 C -0.012 4.012 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.184 1.184 26 H 0.132 0.868 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.189 0.811 35 H 0.185 0.815 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.695 4.266 25.339 26.319 hybrid contribution 0.120 -0.793 -1.591 1.782 sum -5.575 3.473 23.748 24.639 Atomic orbital electron populations 1.22840 0.89539 1.05547 1.06818 1.21806 0.97296 0.93881 0.78326 1.21965 1.02805 0.87787 1.06638 1.86247 1.70622 1.22268 1.40759 1.19114 0.95125 0.84209 0.94799 1.21317 1.02520 0.95975 0.99085 1.21075 1.01610 0.94676 0.97459 1.17764 1.02949 0.79694 0.96881 1.91470 1.89908 1.35360 1.95905 1.21227 0.97549 0.94462 0.99573 1.20545 1.02962 0.93819 0.96448 1.25043 0.77909 0.83195 0.86697 1.90761 1.36386 1.26610 1.87402 1.86479 1.69215 1.55582 1.14641 1.23186 0.98509 0.95187 0.82768 1.21452 1.01363 0.99959 0.90147 1.18935 0.95063 0.94788 0.92404 1.21621 1.31800 1.12853 0.91731 0.91454 1.26018 0.95084 0.95528 1.03331 1.70098 1.37411 1.23388 1.26553 0.85394 0.79217 0.78076 0.78055 1.19714 1.20970 1.18381 0.86759 0.88497 0.90779 0.91302 0.87783 0.86861 0.85757 0.84140 0.81149 0.81529 0.92072 0.92103 0.91145 0.91090 0.98675 0.98673 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 8.15 71.98 0.59 -2.34 16 2 C 0.13 2.57 1.05 -11.54 -0.01 2.56 16 3 C -0.14 -1.92 8.79 71.98 0.63 -1.28 16 4 O -0.29 -6.41 9.63 -73.89 -0.71 -7.12 16 5 C 0.11 2.64 5.53 22.49 0.12 2.77 16 6 C -0.17 -4.34 5.53 22.36 0.12 -4.21 16 7 C -0.13 -3.18 10.02 22.30 0.22 -2.95 16 8 C 0.05 1.06 7.30 22.37 0.16 1.23 16 9 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 10 C -0.11 -2.00 10.02 22.30 0.22 -1.77 16 11 C -0.12 -2.25 9.98 22.36 0.22 -2.02 16 12 C 0.43 12.27 4.64 71.24 0.33 12.60 16 13 O -0.52 -18.53 13.56 28.40 0.39 -18.14 16 14 O -0.34 -10.29 9.72 -51.40 -0.50 -10.79 16 15 C 0.08 2.75 5.47 71.99 0.39 3.14 16 16 C -0.09 -3.63 5.53 30.60 0.17 -3.47 16 17 C 0.03 1.31 4.97 29.85 0.15 1.46 16 18 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 20 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 21 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 22 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H 0.11 1.11 8.06 -2.39 -0.02 1.09 16 27 H 0.10 1.43 7.83 -2.39 -0.02 1.41 16 28 H 0.07 1.29 4.85 -2.38 -0.01 1.27 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.35 8.00 -2.39 -0.02 1.33 16 31 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 32 H 0.12 3.30 3.85 -2.91 -0.01 3.29 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 37 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -69.44 353.75 7.31 -62.13 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.02 Total: 11.39 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.03 Total: -23.85 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.28 Total: -56.34 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.83 Total: -36.05 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.44 7.31 -62.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.108 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds