Wall clock time and date at job start Tue Mar 31 2020 11:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38533 * 119.99843 * 2 1 4 4 N 1.32991 * 120.52540 * 359.44720 * 3 2 1 5 5 C 1.31872 * 120.67355 * 179.76394 * 4 3 2 6 6 Cl 1.73605 * 119.10186 * 180.23898 * 5 4 3 7 7 N 1.31919 * 121.79967 * 0.52685 * 5 4 3 8 8 C 1.32547 * 120.99351 * 359.73028 * 7 5 4 9 9 C 1.38117 * 119.21650 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.82008 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46787 * 259.97547 * 10 9 8 12 12 C 1.46844 * 111.00221 * 45.78395 * 11 10 9 13 13 C 1.53037 * 109.52384 * 185.83919 * 12 11 10 14 14 C 1.53125 * 109.28047 * 300.82442 * 13 12 11 15 15 C 1.50694 * 109.57413 * 177.58969 * 14 13 12 16 16 H 1.08005 * 120.00217 * 240.28349 * 15 14 13 17 17 C 1.37884 * 120.00286 * 60.28596 * 15 14 13 18 18 N 1.31512 * 119.99440 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99850 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47320 * 90.00332 * 19 17 15 21 21 H 1.48504 * 109.46716 * 210.00051 * 19 17 15 22 22 H 1.48497 * 109.47401 * 329.99946 * 19 17 15 23 23 C 1.53120 * 109.15738 * 57.65309 * 14 13 12 24 24 C 1.46845 * 111.00147 * 169.99897 * 11 10 9 25 25 H 1.09009 * 109.47454 * 300.27416 * 1 2 3 26 26 H 1.08998 * 109.47492 * 60.27711 * 1 2 3 27 27 H 1.08998 * 109.47377 * 180.27901 * 1 2 3 28 28 H 0.97001 * 119.99790 * 179.71934 * 2 1 3 29 29 H 1.08003 * 120.39118 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47200 * 19.96816 * 10 9 8 31 31 H 1.08997 * 109.47470 * 139.97331 * 10 9 8 32 32 H 1.08995 * 109.46618 * 305.85601 * 12 11 10 33 33 H 1.09005 * 109.46122 * 65.83148 * 12 11 10 34 34 H 1.09000 * 109.50685 * 180.87929 * 13 12 11 35 35 H 1.09004 * 109.50314 * 60.76335 * 13 12 11 36 36 H 1.08993 * 109.52294 * 297.75008 * 14 13 12 37 37 H 0.96998 * 119.99408 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.49738 * 182.40629 * 23 14 13 39 39 H 1.09000 * 109.53478 * 62.30681 * 23 14 13 40 40 H 1.08999 * 109.46418 * 294.17799 * 24 11 10 41 41 H 1.09000 * 109.46068 * 54.14911 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1576 1.1998 0.0000 4 7 1.5033 2.3575 -0.0111 5 6 2.1596 3.5013 -0.0064 6 17 1.2642 4.9886 -0.0149 7 7 3.4780 3.5462 -0.0011 8 6 4.1988 2.4339 0.0051 9 6 3.5538 1.2126 0.0055 10 6 4.3376 -0.0746 0.0131 11 7 4.3931 -0.6220 -1.3490 12 6 4.7255 0.4246 -2.3238 13 6 4.6317 -0.1472 -3.7402 14 6 5.6023 -1.3238 -3.8757 15 6 5.4728 -1.9295 -5.2494 16 1 5.1792 -2.9632 -5.3584 17 6 5.7292 -1.1642 -6.3673 18 7 6.0863 0.0945 -6.2346 19 14 5.5694 -1.9153 -8.0702 20 1 4.1821 -1.7281 -8.5656 21 1 6.5199 -1.2488 -8.9963 22 1 5.8793 -3.3660 -8.0024 23 6 5.2647 -2.3780 -2.8177 24 6 5.3401 -1.7415 -1.4281 25 1 -0.3634 0.5181 0.8876 26 1 -0.3634 0.5095 -0.8924 27 1 -0.3634 -1.0276 0.0050 28 1 1.9500 -0.8401 0.0041 29 1 5.2778 2.4820 0.0099 30 1 5.3498 0.1185 0.3684 31 1 3.8513 -0.7923 0.6737 32 1 4.0253 1.2535 -2.2198 33 1 5.7395 0.7810 -2.1425 34 1 4.8937 0.6256 -4.4628 35 1 3.6145 -0.4913 -3.9272 36 1 6.6234 -0.9727 -3.7271 37 1 6.2671 0.6328 -7.0210 38 1 5.9790 -3.1990 -2.8812 39 1 4.2575 -2.7577 -2.9899 40 1 6.3512 -1.3750 -1.2508 41 1 5.0862 -2.4859 -0.6735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142491500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:26 Heat of formation + Delta-G solvation = 26.846218 kcal Electronic energy + Delta-G solvation = -23867.070982 eV Core-core repulsion = 20420.828400 eV Total energy + Delta-G solvation = -3446.242582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22421 -39.74959 -38.07588 -37.27186 -36.08416 -34.29650 -33.44825 -31.95486 -31.39522 -28.40868 -27.60125 -26.46195 -24.22909 -24.03810 -23.59794 -22.37340 -20.38462 -19.59028 -18.77887 -18.44136 -17.12162 -16.78496 -16.52224 -16.32425 -15.97134 -15.69927 -15.33882 -14.80870 -14.77613 -14.68876 -14.62425 -14.23036 -13.83579 -13.33588 -13.17587 -12.95303 -12.88968 -12.75953 -12.57365 -12.50327 -12.34825 -12.21370 -12.05789 -11.86057 -11.78131 -11.33313 -10.84669 -10.73521 -10.59669 -10.37499 -10.35595 -9.28218 -9.00035 -8.07924 -6.20904 -0.25106 0.25243 0.36652 1.39743 1.41017 1.50454 2.13701 2.43318 2.59060 3.14725 3.20041 3.21453 3.55570 3.76858 3.83541 4.13105 4.23185 4.35763 4.42712 4.47571 4.54896 4.68768 4.70580 4.79925 4.84213 4.90920 4.96887 5.03303 5.12086 5.13946 5.26243 5.35445 5.58325 5.60351 5.63216 5.95206 6.01923 6.03534 6.25116 6.33578 6.41731 6.52921 6.92248 7.01774 7.47253 8.96231 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.003716 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.556729 B = 7532.688811 C = 8124.780228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.691 5.691 3 C 0.457 3.543 4 N -0.581 5.581 5 C 0.389 3.611 6 Cl 0.022 6.978 7 N -0.565 5.565 8 C 0.185 3.815 9 C -0.242 4.242 10 C 0.110 3.890 11 N -0.532 5.532 12 C 0.079 3.921 13 C -0.092 4.092 14 C 0.045 3.955 15 C -0.531 4.531 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.949 3.051 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.099 4.099 24 C 0.067 3.933 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.428 0.572 29 H 0.190 0.810 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.020 0.980 34 H 0.052 0.948 35 H 0.023 0.977 36 H -0.011 1.011 37 H 0.258 0.742 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 0.707 17.641 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.324 5.324 3 C 0.211 3.789 4 N -0.310 5.310 5 C 0.093 3.907 6 Cl 0.050 6.950 7 N -0.288 5.288 8 C 0.025 3.975 9 C -0.253 4.253 10 C -0.017 4.017 11 N -0.257 5.257 12 C -0.049 4.049 13 C -0.131 4.131 14 C 0.026 3.974 15 C -0.570 4.570 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.775 3.225 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.137 4.137 24 C -0.061 4.061 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.268 0.732 29 H 0.207 0.793 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.008 0.992 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.274 1.573 17.410 19.788 hybrid contribution 1.271 -0.395 -1.329 1.881 sum -8.003 1.178 16.080 18.000 Atomic orbital electron populations 1.21671 0.77749 1.03859 1.01559 1.44464 1.07714 1.04007 1.76177 1.18320 0.87961 0.86366 0.86280 1.67258 1.41544 0.97106 1.25092 1.22677 0.86756 0.87968 0.93298 1.98407 1.73020 1.27532 1.96070 1.67914 1.06030 1.33409 1.21440 1.23188 1.01132 0.85418 0.87793 1.20993 0.93393 0.98518 1.12377 1.20870 0.98793 0.91448 0.90630 1.62129 1.50844 1.09010 1.03755 1.21883 0.97016 0.93170 0.92827 1.21379 0.97855 0.99813 0.94034 1.18655 0.93055 0.92626 0.93047 1.21629 1.45562 0.97152 0.92619 0.93014 1.25726 0.95007 0.95277 1.02639 1.70021 1.47843 1.07872 1.30092 0.85697 0.77746 0.78894 0.80180 1.20469 1.21105 1.19059 1.21526 1.00434 0.97749 0.93953 1.22093 0.93054 0.93071 0.97841 0.92170 0.93704 0.87711 0.73240 0.79272 0.91796 0.87485 0.93299 0.96214 0.92966 0.95815 0.99247 0.93271 0.92700 0.92956 0.95404 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 10.76 127.77 1.37 2.96 16 2 N -0.69 -13.99 5.78 -366.06 -2.12 -16.11 16 3 C 0.46 11.78 7.50 133.17 1.00 12.78 16 4 N -0.58 -16.78 9.67 -188.31 -1.82 -18.60 16 5 C 0.39 11.47 8.18 180.82 1.48 12.95 16 6 Cl 0.02 0.56 29.27 -2.72 -0.08 0.48 16 7 N -0.57 -16.66 10.40 -190.98 -1.99 -18.64 16 8 C 0.18 4.71 9.96 84.56 0.84 5.55 16 9 C -0.24 -5.88 3.72 -19.56 -0.07 -5.95 16 10 C 0.11 2.29 4.79 85.56 0.41 2.70 16 11 N -0.53 -15.16 4.80 -900.96 -4.32 -19.48 16 12 C 0.08 2.91 4.82 86.33 0.42 3.33 16 13 C -0.09 -4.38 5.12 30.65 0.16 -4.22 16 14 C 0.04 2.18 2.16 -11.46 -0.02 2.16 16 15 C -0.53 -29.16 8.56 25.60 0.22 -28.94 16 16 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 17 C 0.01 0.66 5.31 84.66 0.45 1.10 16 18 N -0.92 -53.70 11.37 21.45 0.24 -53.45 16 19 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C -0.10 -3.73 5.32 30.65 0.16 -3.57 16 24 C 0.07 1.90 5.42 86.32 0.47 2.37 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.43 7.37 7.19 -92.71 -0.67 6.70 16 29 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.06 1.17 7.98 -2.39 -0.02 1.16 16 31 H 0.11 1.64 7.20 -2.39 -0.02 1.62 16 32 H 0.05 1.83 6.03 -2.39 -0.01 1.82 16 33 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.05 2.88 6.17 -2.39 -0.01 2.86 16 35 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 2.12 8.12 -2.39 -0.02 2.11 16 Total: -1.00 -65.76 343.86 -0.80 -66.56 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.38 Total: 10.07 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.88 Total: 3.21 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -10.00 Total: -126.28 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -0.08 Total: 0.48 kcal Total: -65.76 -0.80 -66.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142491500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.408 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds