Wall clock time and date at job start Tue Mar 31 2020 10:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47278 * 2 1 4 4 C 1.38529 * 120.39394 * 124.99723 * 3 2 1 5 5 C 1.38776 * 118.54627 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 120.41744 * 180.02562 * 5 4 3 7 7 N 1.32405 * 119.16505 * 0.02562 * 5 4 3 8 8 C 1.32468 * 120.72125 * 359.97438 * 7 5 4 9 9 N 1.38399 * 119.21321 * 179.97438 * 8 7 5 10 10 C 1.46956 * 110.99994 * 0.02562 * 9 8 7 11 11 C 1.53056 * 109.38342 * 183.17807 * 10 9 8 12 12 N 1.46963 * 109.35944 * 301.62902 * 11 10 9 13 13 C 1.46903 * 110.99595 * 183.16796 * 12 11 10 14 14 C 1.50697 * 109.46882 * 66.17766 * 13 12 11 15 15 H 1.08001 * 120.00544 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31526 * 119.99817 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00173 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46972 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47416 * 119.99918 * 18 16 14 21 21 H 1.48513 * 109.47085 * 239.99876 * 18 16 14 22 22 C 1.46956 * 110.89784 * 59.28921 * 12 11 10 23 23 C 1.46962 * 110.99938 * 123.80091 * 9 8 7 24 24 N 1.32302 * 120.38872 * 305.23416 * 3 2 1 25 25 H 1.09000 * 109.46985 * 300.00365 * 1 2 3 26 26 H 1.08998 * 109.46845 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46985 * 239.99635 * 2 1 3 29 29 H 1.09008 * 109.47077 * 119.99682 * 2 1 3 30 30 H 1.08005 * 120.72544 * 359.96140 * 4 3 2 31 31 H 1.09002 * 109.48806 * 303.15534 * 10 9 8 32 32 H 1.09002 * 109.49141 * 63.19807 * 10 9 8 33 33 H 1.08992 * 109.49038 * 61.57437 * 11 10 9 34 34 H 1.08994 * 109.48641 * 181.64718 * 11 10 9 35 35 H 1.09001 * 109.46898 * 186.18135 * 13 12 11 36 36 H 1.08997 * 109.46990 * 306.17810 * 13 12 11 37 37 H 0.97005 * 119.99662 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.48806 * 180.71933 * 22 12 11 39 39 H 1.09003 * 109.49203 * 60.65575 * 22 12 11 40 40 H 1.09001 * 109.48625 * 296.77894 * 23 9 8 41 41 H 1.09003 * 109.48941 * 56.82501 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9122 1.8532 0.9788 5 6 3.3508 3.1693 0.9419 6 17 4.4540 3.7622 2.1440 7 7 2.9172 3.9671 -0.0218 8 6 2.0757 3.5208 -0.9424 9 7 1.6421 4.3819 -1.9354 10 6 2.2357 5.7162 -1.7715 11 6 1.6718 6.6576 -2.8385 12 7 1.9646 6.1137 -4.1720 13 6 1.5044 7.0277 -5.2260 14 6 2.3112 8.2995 -5.1754 15 1 3.0884 8.4170 -4.4347 16 6 2.0571 9.3133 -6.0747 17 7 1.1110 9.1700 -6.9770 18 14 3.0576 10.8895 -6.0126 19 1 4.0531 10.8009 -4.9143 20 1 3.7622 11.0799 -7.3058 21 1 2.1523 12.0411 -5.7678 22 6 1.3710 4.7794 -4.3358 23 6 1.9359 3.8386 -3.2689 24 7 1.6348 2.2713 -0.9322 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.2492 1.1807 1.7539 31 1 1.9942 6.1026 -0.7813 32 1 3.3181 5.6488 -1.8815 33 1 0.5930 6.7467 -2.7113 34 1 2.1327 7.6400 -2.7369 35 1 1.6331 6.5541 -6.1992 36 1 0.4507 7.2595 -5.0712 37 1 0.9320 9.8834 -7.6095 38 1 1.6126 4.3930 -5.3261 39 1 0.2887 4.8468 -4.2255 40 1 3.0148 3.7502 -3.3959 41 1 1.4759 2.8556 -3.3705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165058439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:14 Heat of formation + Delta-G solvation = 61.583862 kcal Electronic energy + Delta-G solvation = -23242.418525 eV Core-core repulsion = 19797.682281 eV Total energy + Delta-G solvation = -3444.736244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51568 -38.83689 -37.14026 -35.84667 -34.68828 -32.75439 -32.26369 -30.81819 -30.45554 -27.98663 -25.53642 -25.40688 -23.36295 -23.14966 -21.87393 -21.38565 -19.39459 -18.12743 -17.54939 -16.33084 -16.07645 -15.75828 -15.34389 -14.77411 -14.65848 -14.40320 -14.36852 -14.09526 -13.93382 -13.58963 -13.29724 -12.93635 -12.29052 -12.15484 -11.95886 -11.82764 -11.73522 -11.51798 -11.35002 -11.13999 -10.94461 -10.82020 -10.76958 -10.53825 -10.46396 -10.38295 -10.07609 -9.80152 -9.43872 -9.19008 -8.48639 -8.42005 -7.31056 -6.03941 -4.05426 0.62637 0.74070 1.35288 3.04478 3.30988 3.38554 3.41612 3.43509 3.83196 4.35263 4.41504 4.46645 4.72407 4.78069 4.87321 4.91037 5.11574 5.17715 5.27795 5.31625 5.40703 5.52784 5.55615 5.63546 5.70031 5.77851 5.84700 5.98159 6.04070 6.09708 6.30326 6.46490 6.54117 6.60818 6.72431 7.10419 7.25296 7.32049 7.77338 7.91424 8.03716 8.14509 8.50385 9.02252 9.59093 11.06932 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.003184 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.263234 B = 8792.793407 C =10068.423717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.217 3.783 4 C -0.254 4.254 5 C 0.252 3.748 6 Cl -0.019 7.019 7 N -0.550 5.550 8 C 0.526 3.474 9 N -0.455 5.455 10 C 0.071 3.929 11 C 0.064 3.936 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.508 4.508 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.055 3.945 23 C 0.074 3.926 24 N -0.525 5.525 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.153 0.847 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.032 0.968 36 H -0.007 1.007 37 H 0.261 0.739 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -18.937 16.819 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.068 3.932 4 C -0.279 4.279 5 C 0.078 3.922 6 Cl 0.010 6.990 7 N -0.273 5.273 8 C 0.171 3.829 9 N -0.174 5.174 10 C -0.056 4.056 11 C -0.065 4.065 12 N -0.265 5.265 13 C 0.069 3.931 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.074 4.074 23 C -0.052 4.052 24 N -0.244 5.244 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.171 0.829 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.011 0.989 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.690 -18.077 15.952 24.169 hybrid contribution 0.685 0.624 0.831 1.245 sum 2.375 -17.454 16.783 24.330 Atomic orbital electron populations 1.21681 0.93295 1.02140 1.03161 1.20576 0.97621 0.88872 1.03930 1.21617 0.88561 0.96041 0.86991 1.22268 1.05123 0.96113 1.04423 1.21845 0.90890 0.89604 0.89904 1.98432 1.59709 1.89398 1.51478 1.67765 1.14129 1.39338 1.06109 1.21072 0.84462 0.86879 0.90507 1.58707 1.53269 1.03196 1.02224 1.22318 0.98312 0.84771 1.00162 1.22107 0.98424 0.97877 0.88059 1.62341 1.58643 1.02141 1.03353 1.19720 0.94081 0.90544 0.88780 1.21187 1.18215 0.99161 1.16084 0.91772 1.24992 0.95430 0.98806 0.95375 1.69974 1.31457 1.33446 1.18882 0.86448 0.80032 0.83023 0.77969 1.19616 1.21025 1.21109 1.22125 0.96997 0.91061 0.97239 1.22352 1.00091 0.98759 0.83966 1.67854 1.26648 1.02850 1.27073 0.92785 0.91091 0.91857 0.88961 0.89583 0.82926 0.89769 0.91986 0.95026 0.88586 0.95039 0.98870 0.92961 0.89984 0.94559 0.92947 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.78 37.16 0.36 -0.68 16 2 C -0.07 -0.50 6.36 -27.88 -0.18 -0.67 16 3 C 0.22 2.29 6.21 -82.28 -0.51 1.78 16 4 C -0.25 -2.53 9.60 -39.28 -0.38 -2.90 16 5 C 0.25 3.13 7.33 -17.11 -0.13 3.00 16 6 Cl -0.02 -0.20 29.15 -51.86 -1.51 -1.71 16 7 N -0.55 -8.28 8.69 -11.03 -0.10 -8.38 16 8 C 0.53 8.10 7.17 -322.83 -2.31 5.79 16 9 N -0.46 -7.48 4.77 -175.23 -0.84 -8.32 16 10 C 0.07 1.21 4.76 -3.76 -0.02 1.20 16 11 C 0.06 1.26 5.43 -3.76 -0.02 1.24 16 12 N -0.54 -11.57 4.70 -235.90 -1.11 -12.68 16 13 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 14 C -0.51 -14.12 8.47 -34.44 -0.29 -14.41 16 15 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 16 C 0.06 1.56 5.46 -17.81 -0.10 1.46 16 17 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.05 0.99 5.61 -3.77 -0.02 0.97 16 23 C 0.07 1.17 5.46 -3.76 -0.02 1.14 16 24 N -0.52 -7.16 9.32 -10.17 -0.09 -7.25 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.64 7.98 -51.93 -0.41 0.23 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.38 7.93 -51.92 -0.41 -0.03 16 30 H 0.15 1.01 8.00 -52.48 -0.42 0.59 16 31 H 0.08 1.38 7.80 -51.93 -0.41 0.97 16 32 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 2.00 6.79 -51.93 -0.35 1.65 16 35 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 36 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.30 7.65 -51.93 -0.40 0.90 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -30.71 349.83 -12.41 -43.12 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -6.12 Total: -3.68 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -3.63 Total: 2.88 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -1.40 Total: -62.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.71 -12.41 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165058439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.705 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds