Wall clock time and date at job start Tue Mar 31 2020 10:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47278 * 2 1 4 4 C 1.38529 * 120.39394 * 124.99723 * 3 2 1 5 5 C 1.38776 * 118.54627 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 120.41744 * 180.02562 * 5 4 3 7 7 N 1.32405 * 119.16505 * 0.02562 * 5 4 3 8 8 C 1.32468 * 120.72125 * 359.97438 * 7 5 4 9 9 N 1.38399 * 119.21321 * 179.97438 * 8 7 5 10 10 C 1.46956 * 110.99994 * 0.02562 * 9 8 7 11 11 C 1.53056 * 109.38342 * 183.17807 * 10 9 8 12 12 N 1.46963 * 109.35944 * 301.62902 * 11 10 9 13 13 C 1.46903 * 110.99595 * 183.16796 * 12 11 10 14 14 C 1.50697 * 109.46882 * 66.17766 * 13 12 11 15 15 H 1.08001 * 120.00544 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31526 * 119.99817 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00173 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46972 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47416 * 119.99918 * 18 16 14 21 21 H 1.48513 * 109.47085 * 239.99876 * 18 16 14 22 22 C 1.46956 * 110.89784 * 59.28921 * 12 11 10 23 23 C 1.46962 * 110.99938 * 123.80091 * 9 8 7 24 24 N 1.32302 * 120.38872 * 305.23416 * 3 2 1 25 25 H 1.09000 * 109.46985 * 300.00365 * 1 2 3 26 26 H 1.08998 * 109.46845 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.46949 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46985 * 239.99635 * 2 1 3 29 29 H 1.09008 * 109.47077 * 119.99682 * 2 1 3 30 30 H 1.08005 * 120.72544 * 359.96140 * 4 3 2 31 31 H 1.09002 * 109.48806 * 303.15534 * 10 9 8 32 32 H 1.09002 * 109.49141 * 63.19807 * 10 9 8 33 33 H 1.08992 * 109.49038 * 61.57437 * 11 10 9 34 34 H 1.08994 * 109.48641 * 181.64718 * 11 10 9 35 35 H 1.09001 * 109.46898 * 186.18135 * 13 12 11 36 36 H 1.08997 * 109.46990 * 306.17810 * 13 12 11 37 37 H 0.97005 * 119.99662 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.48806 * 180.71933 * 22 12 11 39 39 H 1.09003 * 109.49203 * 60.65575 * 22 12 11 40 40 H 1.09001 * 109.48625 * 296.77894 * 23 9 8 41 41 H 1.09003 * 109.48941 * 56.82501 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9122 1.8532 0.9788 5 6 3.3508 3.1693 0.9419 6 17 4.4540 3.7622 2.1440 7 7 2.9172 3.9671 -0.0218 8 6 2.0757 3.5208 -0.9424 9 7 1.6421 4.3819 -1.9354 10 6 2.2357 5.7162 -1.7715 11 6 1.6718 6.6576 -2.8385 12 7 1.9646 6.1137 -4.1720 13 6 1.5044 7.0277 -5.2260 14 6 2.3112 8.2995 -5.1754 15 1 3.0884 8.4170 -4.4347 16 6 2.0571 9.3133 -6.0747 17 7 1.1110 9.1700 -6.9770 18 14 3.0576 10.8895 -6.0126 19 1 4.0531 10.8009 -4.9143 20 1 3.7622 11.0799 -7.3058 21 1 2.1523 12.0411 -5.7678 22 6 1.3710 4.7794 -4.3358 23 6 1.9359 3.8386 -3.2689 24 7 1.6348 2.2713 -0.9322 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.2492 1.1807 1.7539 31 1 1.9942 6.1026 -0.7813 32 1 3.3181 5.6488 -1.8815 33 1 0.5930 6.7467 -2.7113 34 1 2.1327 7.6400 -2.7369 35 1 1.6331 6.5541 -6.1992 36 1 0.4507 7.2595 -5.0712 37 1 0.9320 9.8834 -7.6095 38 1 1.6126 4.3930 -5.3261 39 1 0.2887 4.8468 -4.2255 40 1 3.0148 3.7502 -3.3959 41 1 1.4759 2.8556 -3.3705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165058439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:13 Heat of formation + Delta-G solvation = 42.911456 kcal Electronic energy + Delta-G solvation = -23243.228221 eV Core-core repulsion = 19797.682281 eV Total energy + Delta-G solvation = -3445.545941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.52245 -40.19731 -38.01971 -37.15332 -35.78569 -34.61284 -33.35074 -32.11206 -31.56320 -29.73020 -27.15952 -26.33443 -24.57616 -24.51002 -23.35345 -22.56223 -20.86492 -19.15328 -18.64354 -18.46502 -17.06112 -16.83642 -16.67940 -16.17605 -15.94050 -15.74795 -15.48307 -15.38287 -15.08888 -15.03467 -14.68148 -14.06454 -13.70479 -13.51753 -13.16112 -13.02305 -12.78931 -12.64451 -12.61848 -12.47171 -12.37355 -12.28327 -12.14949 -12.13388 -11.94448 -11.68519 -11.34222 -11.25845 -11.05135 -10.62428 -10.41209 -9.59213 -9.11361 -8.21045 -6.30871 -0.32320 -0.15863 0.46615 1.41259 1.41906 1.55528 1.94993 2.40174 2.45516 2.96299 3.10871 3.20234 3.37807 3.58632 3.81343 3.97785 4.01254 4.08906 4.18848 4.21626 4.33418 4.38346 4.46733 4.56571 4.67109 4.72269 4.83207 4.92032 4.93244 5.04008 5.09440 5.15483 5.17201 5.21958 5.41419 5.44717 5.53553 5.64279 6.01125 6.02662 6.24738 6.54934 6.84460 6.90782 7.38796 8.90357 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.003184 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.263234 B = 8792.793407 C =10068.423717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C 0.211 3.789 4 C -0.232 4.232 5 C 0.232 3.768 6 Cl -0.007 7.007 7 N -0.576 5.576 8 C 0.508 3.492 9 N -0.467 5.467 10 C 0.092 3.908 11 C 0.070 3.930 12 N -0.545 5.545 13 C 0.209 3.791 14 C -0.523 4.523 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.056 3.944 23 C 0.089 3.911 24 N -0.537 5.537 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.192 0.808 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.010 0.990 36 H -0.036 1.036 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.030 0.970 40 H 0.048 0.952 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -20.761 18.766 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C 0.062 3.938 4 C -0.256 4.256 5 C 0.059 3.941 6 Cl 0.021 6.979 7 N -0.299 5.299 8 C 0.152 3.848 9 N -0.187 5.187 10 C -0.036 4.036 11 C -0.059 4.059 12 N -0.270 5.270 13 C 0.083 3.917 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.073 4.073 23 C -0.037 4.037 24 N -0.256 5.256 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.210 0.790 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.028 0.972 36 H -0.018 1.018 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.781 -19.943 17.946 26.973 hybrid contribution 0.346 1.044 0.329 1.148 sum 3.127 -18.898 18.275 26.475 Atomic orbital electron populations 1.21661 0.93664 1.03103 1.01681 1.20764 0.97128 0.86591 1.06101 1.22358 0.88120 0.97136 0.86151 1.22717 1.03164 0.95424 1.04335 1.22199 0.91488 0.90492 0.89923 1.98434 1.59241 1.89480 1.50729 1.67656 1.14736 1.40579 1.06962 1.20910 0.85693 0.87557 0.90632 1.58675 1.54176 1.03048 1.02758 1.21983 0.97402 0.85103 0.99074 1.22024 0.97798 0.98080 0.88015 1.62253 1.58898 1.02828 1.03046 1.19365 0.92221 0.90899 0.89193 1.21474 1.18352 1.00167 1.16137 0.91867 1.25894 0.96463 1.02342 0.94844 1.70094 1.32942 1.34731 1.19636 0.85342 0.78534 0.78545 0.78253 1.18764 1.20378 1.20446 1.22183 0.96637 0.89681 0.98777 1.22186 0.99673 0.98598 0.83271 1.67878 1.26897 1.02456 1.28398 0.93317 0.93527 0.89684 0.87969 0.86114 0.79035 0.89113 0.92873 0.95972 0.90125 0.97215 1.01801 0.92661 0.89348 0.95124 0.93386 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.78 71.98 0.70 -0.99 16 2 C -0.07 -0.68 6.36 29.85 0.19 -0.49 16 3 C 0.21 3.86 6.21 42.56 0.26 4.12 16 4 C -0.23 -3.85 9.60 22.47 0.22 -3.64 16 5 C 0.23 5.30 7.33 84.74 0.62 5.92 16 6 Cl -0.01 -0.14 29.15 -2.72 -0.08 -0.22 16 7 N -0.58 -16.84 8.69 -188.81 -1.64 -18.48 16 8 C 0.51 15.29 7.17 261.49 1.87 17.16 16 9 N -0.47 -15.37 4.77 -708.30 -3.38 -18.75 16 10 C 0.09 3.18 4.76 86.31 0.41 3.59 16 11 C 0.07 2.84 5.43 86.31 0.47 3.31 16 12 N -0.55 -24.22 4.70 -900.26 -4.23 -28.45 16 13 C 0.21 11.28 4.72 85.56 0.40 11.69 16 14 C -0.52 -29.85 8.47 25.60 0.22 -29.63 16 15 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 18 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C 0.06 2.06 5.61 86.31 0.48 2.54 16 23 C 0.09 2.78 5.46 86.31 0.47 3.25 16 24 N -0.54 -13.85 9.32 -186.09 -1.73 -15.59 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.78 7.98 -2.39 -0.02 0.76 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.12 0.42 7.93 -2.38 -0.02 0.40 16 30 H 0.19 1.58 8.00 -2.91 -0.02 1.55 16 31 H 0.09 3.01 7.80 -2.39 -0.02 3.00 16 32 H 0.05 1.93 8.03 -2.39 -0.02 1.91 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 3.50 6.79 -2.39 -0.02 3.48 16 35 H 0.01 0.56 8.03 -2.39 -0.02 0.54 16 36 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 37 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 38 H 0.09 3.10 8.07 -2.39 -0.02 3.08 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 3.03 7.65 -2.39 -0.02 3.01 16 Total: -1.00 -68.10 349.83 -0.95 -69.04 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.02 Total: 4.46 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.79 Total: 17.46 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -10.70 Total: -137.39 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -68.10 -0.95 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165058439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.956 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds