Wall clock time and date at job start Tue Mar 31 2020 09:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38243 * 120.00170 * 2 1 4 4 C 1.38237 * 119.99791 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.00287 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00227 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46923 * 25.00221 * 6 5 4 8 8 C 1.53000 * 109.47294 * 265.00359 * 6 5 4 9 9 O 1.42906 * 109.47246 * 144.99959 * 6 5 4 10 10 C 1.35656 * 116.99896 * 204.90948 * 9 6 5 11 11 C 1.39163 * 119.90118 * 174.27019 * 10 9 6 12 12 C 1.37594 * 120.09151 * 179.76305 * 11 10 9 13 13 C 1.39951 * 119.90660 * 0.51767 * 12 11 10 14 14 C 1.47570 * 120.09452 * 179.71889 * 13 12 11 15 15 O 1.21822 * 119.99807 * 180.02562 * 14 13 12 16 16 C 1.41759 * 120.00128 * 0.02562 * 14 13 12 17 17 H 1.07998 * 120.00235 * 0.02562 * 16 14 13 18 18 C 1.40346 * 119.99836 * 179.97438 * 16 14 13 19 19 N 1.30528 * 120.00083 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99628 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47307 * 90.00118 * 20 18 16 22 22 H 1.48507 * 109.46904 * 209.99992 * 20 18 16 23 23 H 1.48497 * 109.47393 * 329.99547 * 20 18 16 24 24 C 1.39950 * 119.81246 * 359.73600 * 13 12 11 25 25 C 1.37591 * 119.90317 * 0.02562 * 24 13 12 26 26 C 1.38238 * 119.99751 * 0.25594 * 5 4 3 27 27 C 1.38227 * 120.00131 * 359.46977 * 26 5 4 28 28 H 1.09000 * 109.46536 * 89.99888 * 1 2 3 29 29 H 1.09000 * 109.47071 * 210.00064 * 1 2 3 30 30 H 1.09002 * 109.47088 * 329.99884 * 1 2 3 31 31 H 1.07995 * 119.99858 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99626 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46954 * 60.00403 * 8 6 5 34 34 H 1.09006 * 109.47042 * 179.97438 * 8 6 5 35 35 H 1.08996 * 109.47359 * 299.99627 * 8 6 5 36 36 H 1.07999 * 119.95906 * 0.02562 * 11 10 9 37 37 H 1.08007 * 120.04972 * 180.25489 * 12 11 10 38 38 H 0.97001 * 119.99659 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.05088 * 179.97438 * 24 13 12 40 40 H 1.07997 * 119.95571 * 179.97438 * 25 24 13 41 41 H 1.08008 * 119.99621 * 179.72682 * 26 5 4 42 42 H 1.08001 * 119.99958 * 180.27206 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 1 6.1424 0.9315 0.4320 8 6 6.2876 -0.1264 -1.4390 9 8 6.2556 -1.1034 0.7712 10 6 7.4949 -0.9875 1.3106 11 6 7.9718 -1.9718 2.1711 12 6 9.2301 -1.8606 2.7167 13 6 10.0264 -0.7503 2.4136 14 6 11.3741 -0.6238 3.0012 15 8 12.0656 0.3436 2.7366 16 6 11.8641 -1.6280 3.8737 17 1 11.2513 -2.4858 4.1080 18 6 13.1461 -1.5078 4.4321 19 7 13.8874 -0.4718 4.1478 20 14 13.7920 -2.8314 5.5811 21 1 14.5040 -3.8681 4.7915 22 1 14.7295 -2.2234 6.5592 23 1 12.6560 -3.4549 6.3063 24 6 9.5408 0.2398 1.5519 25 6 8.2833 0.1183 1.0069 26 6 3.5805 -1.1972 -0.0053 27 6 2.1982 -1.1971 0.0009 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 -0.0010 33 1 5.9240 0.7152 -2.0285 34 1 7.3777 -0.1260 -1.4399 35 1 5.9240 -1.0579 -1.8727 36 1 7.3551 -2.8262 2.4078 37 1 9.6011 -2.6269 3.3812 38 1 14.7732 -0.3886 4.5340 39 1 10.1519 1.0984 1.3158 40 1 7.9076 0.8821 0.3422 41 1 4.1205 -2.1325 -0.0098 42 1 1.6582 -2.1325 0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:29 Heat of formation + Delta-G solvation = -39.518545 kcal Electronic energy + Delta-G solvation = -23774.411873 eV Core-core repulsion = 20263.138847 eV Total energy + Delta-G solvation = -3511.273026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31352 -39.21474 -37.56713 -35.78024 -33.86662 -32.68641 -31.16082 -31.09699 -30.34172 -29.28355 -27.03574 -26.55270 -23.72618 -23.05544 -22.28624 -21.95257 -20.45272 -19.58102 -17.87324 -17.04909 -16.36007 -15.67705 -15.41401 -15.32832 -15.05983 -14.82328 -14.30922 -14.04500 -13.93337 -13.60181 -13.58285 -13.22168 -12.81450 -12.77038 -12.59639 -12.51732 -12.30877 -12.09779 -11.88620 -11.69469 -11.53911 -11.22998 -11.20177 -11.05211 -10.96567 -10.51048 -10.37233 -10.35070 -9.92365 -9.10813 -8.97735 -8.73694 -8.41470 -7.48250 -7.45766 -6.30670 -4.90744 1.07038 1.22387 1.85948 2.01335 3.05011 3.12755 3.16125 3.28569 3.58704 4.00434 4.03630 4.45685 4.60445 4.65042 4.69328 4.81703 4.91079 5.01136 5.12066 5.26972 5.28265 5.32995 5.41186 5.46081 5.51255 5.54298 5.65486 5.81721 5.83231 5.86838 5.93152 5.99189 6.08415 6.14185 6.21338 6.28853 6.37940 6.45871 6.64782 6.79590 6.86494 7.04868 7.24571 7.35895 7.39443 7.85272 8.03489 8.78922 8.84332 10.31003 10.53168 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.002387 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.899002 B =11725.947815 C =12155.742469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.105 4.105 5 C -0.087 4.087 6 C 0.124 3.876 7 H 0.082 0.918 8 C -0.173 4.173 9 O -0.310 6.310 10 C 0.114 3.886 11 C -0.164 4.164 12 C -0.057 4.057 13 C -0.137 4.137 14 C 0.389 3.611 15 O -0.545 6.545 16 C -0.517 4.517 17 H 0.074 0.926 18 C 0.079 3.921 19 N -0.735 5.735 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.056 4.056 25 C -0.221 4.221 26 C -0.088 4.088 27 C -0.123 4.123 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.274 0.726 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.242 -0.356 -8.438 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.123 4.123 5 C -0.088 4.088 6 C 0.068 3.932 7 H 0.099 0.901 8 C -0.231 4.231 9 O -0.225 6.225 10 C 0.069 3.931 11 C -0.183 4.183 12 C -0.075 4.075 13 C -0.138 4.138 14 C 0.285 3.715 15 O -0.435 6.435 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.144 4.144 19 N -0.364 5.364 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.074 4.074 25 C -0.240 4.240 26 C -0.106 4.106 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.917 0.076 -8.565 23.531 hybrid contribution 0.318 -0.526 0.476 0.777 sum -21.599 -0.450 -8.089 23.069 Atomic orbital electron populations 1.20794 0.91261 1.02785 1.02248 1.19960 0.96065 0.93289 0.99495 1.20951 0.93830 0.97582 1.01632 1.20932 0.94281 0.97221 0.99912 1.19632 0.93613 0.93872 1.01637 1.21058 0.90155 0.90140 0.91843 0.90056 1.22347 1.02485 1.03090 0.95150 1.85983 1.30285 1.41243 1.64951 1.19092 0.83937 0.95398 0.94629 1.20341 0.97491 0.99632 1.00850 1.21394 0.91690 0.97451 0.96948 1.21815 0.99844 0.94032 0.98120 1.18071 0.83219 0.87578 0.82627 1.90499 1.58207 1.33371 1.61393 1.20937 1.00247 1.07609 1.26024 0.90760 1.26016 0.96694 0.95726 0.95989 1.69962 1.08116 1.25243 1.33078 0.86378 0.79385 0.81133 0.80097 1.19377 1.20170 1.18478 1.21184 0.93660 0.98481 0.94091 1.21117 0.96828 0.99279 1.06730 1.21029 0.93825 0.98148 0.97591 1.21054 0.94126 0.97552 1.01378 0.91219 0.91539 0.91573 0.85963 0.85867 0.91161 0.91027 0.91439 0.86052 0.84636 0.91510 0.85535 0.86217 0.85343 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.79 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 4 C -0.11 -1.06 9.68 -39.58 -0.38 -1.45 16 5 C -0.09 -1.01 5.00 -104.63 -0.52 -1.53 16 6 C 0.12 1.54 2.43 -27.88 -0.07 1.48 16 7 H 0.08 1.00 6.21 -51.93 -0.32 0.67 16 8 C -0.17 -1.90 9.15 37.16 0.34 -1.56 16 9 O -0.31 -4.73 8.94 -18.67 -0.17 -4.90 16 10 C 0.11 1.98 6.62 -38.89 -0.26 1.72 16 11 C -0.16 -2.95 9.97 -39.47 -0.39 -3.34 16 12 C -0.06 -1.15 9.43 -39.18 -0.37 -1.52 16 13 C -0.14 -3.24 5.89 -104.81 -0.62 -3.86 16 14 C 0.39 11.07 6.91 -34.43 -0.24 10.83 16 15 O -0.54 -17.41 14.89 5.08 0.08 -17.33 16 16 C -0.52 -14.20 8.86 -37.45 -0.33 -14.53 16 17 H 0.07 1.84 6.01 -52.49 -0.32 1.52 16 18 C 0.08 2.13 5.50 -17.31 -0.10 2.03 16 19 N -0.74 -21.20 11.73 55.57 0.65 -20.54 16 20 Si 0.91 19.23 29.56 -169.99 -5.03 14.21 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.06 -1.19 9.59 -39.18 -0.38 -1.56 16 25 C -0.22 -3.91 8.21 -39.47 -0.32 -4.23 16 26 C -0.09 -0.98 9.35 -39.59 -0.37 -1.35 16 27 C -0.12 -1.19 9.70 -39.59 -0.38 -1.58 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.85 6.90 -51.93 -0.36 0.49 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.14 2.63 6.19 -52.48 -0.33 2.30 16 38 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 39 H 0.13 2.75 7.65 -52.49 -0.40 2.35 16 40 H 0.12 1.77 5.40 -52.49 -0.28 1.48 16 41 H 0.13 1.43 7.64 -52.48 -0.40 1.03 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -32.94 355.44 -9.48 -42.42 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.34 Total: 4.51 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -5.03 Total: -23.71 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.65 Total: -20.54 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.09 Total: -22.23 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.94 -9.48 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.898 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds