Wall clock time and date at job start Tue Mar 31 2020 09:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38243 * 120.00170 * 2 1 4 4 C 1.38237 * 119.99791 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.00287 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00227 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46923 * 25.00221 * 6 5 4 8 8 C 1.53000 * 109.47294 * 265.00359 * 6 5 4 9 9 O 1.42906 * 109.47246 * 144.99959 * 6 5 4 10 10 C 1.35656 * 116.99896 * 204.90948 * 9 6 5 11 11 C 1.39163 * 119.90118 * 174.27019 * 10 9 6 12 12 C 1.37594 * 120.09151 * 179.76305 * 11 10 9 13 13 C 1.39951 * 119.90660 * 0.51767 * 12 11 10 14 14 C 1.47570 * 120.09452 * 179.71889 * 13 12 11 15 15 O 1.21822 * 119.99807 * 180.02562 * 14 13 12 16 16 C 1.41759 * 120.00128 * 0.02562 * 14 13 12 17 17 H 1.07998 * 120.00235 * 0.02562 * 16 14 13 18 18 C 1.40346 * 119.99836 * 179.97438 * 16 14 13 19 19 N 1.30528 * 120.00083 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99628 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47307 * 90.00118 * 20 18 16 22 22 H 1.48507 * 109.46904 * 209.99992 * 20 18 16 23 23 H 1.48497 * 109.47393 * 329.99547 * 20 18 16 24 24 C 1.39950 * 119.81246 * 359.73600 * 13 12 11 25 25 C 1.37591 * 119.90317 * 0.02562 * 24 13 12 26 26 C 1.38238 * 119.99751 * 0.25594 * 5 4 3 27 27 C 1.38227 * 120.00131 * 359.46977 * 26 5 4 28 28 H 1.09000 * 109.46536 * 89.99888 * 1 2 3 29 29 H 1.09000 * 109.47071 * 210.00064 * 1 2 3 30 30 H 1.09002 * 109.47088 * 329.99884 * 1 2 3 31 31 H 1.07995 * 119.99858 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99626 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46954 * 60.00403 * 8 6 5 34 34 H 1.09006 * 109.47042 * 179.97438 * 8 6 5 35 35 H 1.08996 * 109.47359 * 299.99627 * 8 6 5 36 36 H 1.07999 * 119.95906 * 0.02562 * 11 10 9 37 37 H 1.08007 * 120.04972 * 180.25489 * 12 11 10 38 38 H 0.97001 * 119.99659 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.05088 * 179.97438 * 24 13 12 40 40 H 1.07997 * 119.95571 * 179.97438 * 25 24 13 41 41 H 1.08008 * 119.99621 * 179.72682 * 26 5 4 42 42 H 1.08001 * 119.99958 * 180.27206 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 1 6.1424 0.9315 0.4320 8 6 6.2876 -0.1264 -1.4390 9 8 6.2556 -1.1034 0.7712 10 6 7.4949 -0.9875 1.3106 11 6 7.9718 -1.9718 2.1711 12 6 9.2301 -1.8606 2.7167 13 6 10.0264 -0.7503 2.4136 14 6 11.3741 -0.6238 3.0012 15 8 12.0656 0.3436 2.7366 16 6 11.8641 -1.6280 3.8737 17 1 11.2513 -2.4858 4.1080 18 6 13.1461 -1.5078 4.4321 19 7 13.8874 -0.4718 4.1478 20 14 13.7920 -2.8314 5.5811 21 1 14.5040 -3.8681 4.7915 22 1 14.7295 -2.2234 6.5592 23 1 12.6560 -3.4549 6.3063 24 6 9.5408 0.2398 1.5519 25 6 8.2833 0.1183 1.0069 26 6 3.5805 -1.1972 -0.0053 27 6 2.1982 -1.1971 0.0009 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 -0.0010 33 1 5.9240 0.7152 -2.0285 34 1 7.3777 -0.1260 -1.4399 35 1 5.9240 -1.0579 -1.8727 36 1 7.3551 -2.8262 2.4078 37 1 9.6011 -2.6269 3.3812 38 1 14.7732 -0.3886 4.5340 39 1 10.1519 1.0984 1.3158 40 1 7.9076 0.8821 0.3422 41 1 4.1205 -2.1325 -0.0098 42 1 1.6582 -2.1325 0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:29 Heat of formation + Delta-G solvation = -56.702568 kcal Electronic energy + Delta-G solvation = -23775.157028 eV Core-core repulsion = 20263.138847 eV Total energy + Delta-G solvation = -3512.018181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46836 -40.24380 -39.19926 -37.56306 -34.84716 -34.69697 -32.28086 -31.86569 -31.67359 -30.83101 -28.63714 -27.61551 -24.95256 -24.13728 -23.57564 -23.10767 -21.56996 -21.23090 -19.17086 -18.65491 -17.70273 -17.43628 -16.48924 -16.27764 -16.12766 -16.08111 -15.70303 -15.37406 -15.03583 -14.73940 -14.49712 -14.41795 -14.29980 -14.21400 -13.98843 -13.63120 -13.43067 -13.13760 -13.04567 -12.97861 -12.82748 -12.70926 -12.57218 -12.38180 -12.04747 -12.00186 -11.82530 -11.68415 -11.49311 -10.99032 -9.94805 -9.84280 -9.62093 -9.47137 -9.04192 -8.34477 -7.07368 0.21499 0.33016 0.46724 0.48864 1.38541 1.39027 1.55804 2.13043 2.21323 2.21642 2.80826 2.85679 3.58065 3.74660 3.81747 3.89059 3.96699 4.04667 4.08280 4.12133 4.17786 4.28188 4.44320 4.50636 4.52614 4.56611 4.65733 4.75822 4.80322 4.85864 4.89587 4.94522 5.10277 5.14038 5.17866 5.20470 5.27765 5.31257 5.43975 5.49219 5.59435 5.69687 5.74841 5.83252 5.98730 6.08883 6.47086 6.69923 6.80299 8.25024 8.49103 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.002387 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.899002 B =11725.947815 C =12155.742469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.112 4.112 5 C -0.105 4.105 6 C 0.119 3.881 7 H 0.084 0.916 8 C -0.170 4.170 9 O -0.309 6.309 10 C 0.132 3.868 11 C -0.161 4.161 12 C -0.053 4.053 13 C -0.180 4.180 14 C 0.364 3.636 15 O -0.601 6.601 16 C -0.543 4.543 17 H 0.097 0.903 18 C 0.021 3.979 19 N -0.788 5.788 20 Si 0.996 3.004 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.244 1.244 24 C -0.067 4.067 25 C -0.211 4.211 26 C -0.104 4.104 27 C -0.131 4.131 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.282 0.718 39 H 0.109 0.891 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.219 -1.739 -8.387 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.130 4.130 5 C -0.105 4.105 6 C 0.063 3.937 7 H 0.102 0.898 8 C -0.227 4.227 9 O -0.223 6.223 10 C 0.086 3.914 11 C -0.179 4.179 12 C -0.071 4.071 13 C -0.181 4.181 14 C 0.265 3.735 15 O -0.496 6.496 16 C -0.573 4.573 17 H 0.115 0.885 18 C -0.198 4.198 19 N -0.417 5.417 20 Si 0.814 3.186 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.167 1.167 24 C -0.085 4.085 25 C -0.229 4.229 26 C -0.122 4.122 27 C -0.149 4.149 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.168 0.832 41 H 0.140 0.860 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.935 -1.317 -8.529 26.387 hybrid contribution 1.010 -0.046 0.341 1.067 sum -23.925 -1.363 -8.188 25.324 Atomic orbital electron populations 1.20849 0.89285 1.03671 1.03188 1.20341 0.97621 0.92982 0.98168 1.21281 0.93638 0.98695 1.00855 1.21159 0.94962 0.97283 0.99636 1.19619 0.92841 0.94665 1.03415 1.21314 0.91116 0.89138 0.92106 0.89768 1.22326 1.01736 1.04106 0.94515 1.86012 1.28752 1.42682 1.64849 1.19178 0.84484 0.94456 0.93264 1.20583 0.96625 1.00599 1.00092 1.21387 0.92288 0.96372 0.97075 1.21467 0.98761 0.96910 1.00972 1.18802 0.85005 0.87064 0.82659 1.90436 1.60377 1.35288 1.63513 1.21465 1.01410 1.08230 1.26223 0.88541 1.27321 0.96550 0.98377 0.97547 1.70113 1.08942 1.27977 1.34663 0.85037 0.79002 0.77211 0.77303 1.18222 1.19365 1.16740 1.21117 0.95065 0.97714 0.94622 1.21273 0.95182 1.00187 1.06250 1.21101 0.94680 0.97870 0.98556 1.21294 0.93709 0.98753 1.01101 0.90138 0.90846 0.90572 0.83787 0.84513 0.89076 0.92015 0.91401 0.82962 0.84035 0.90771 0.87310 0.83228 0.85972 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.24 0.71 -0.36 16 2 C -0.09 -1.40 5.88 -19.86 -0.12 -1.52 16 3 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 4 C -0.11 -2.01 9.68 22.27 0.22 -1.80 16 5 C -0.11 -2.23 5.00 -19.87 -0.10 -2.33 16 6 C 0.12 2.72 2.43 29.85 0.07 2.79 16 7 H 0.08 1.88 6.21 -2.39 -0.01 1.86 16 8 C -0.17 -3.38 9.15 71.98 0.66 -2.73 16 9 O -0.31 -8.79 8.94 -89.72 -0.80 -9.59 16 10 C 0.13 4.36 6.62 22.71 0.15 4.51 16 11 C -0.16 -5.48 9.97 22.34 0.22 -5.26 16 12 C -0.05 -2.16 9.43 22.53 0.21 -1.95 16 13 C -0.18 -8.86 5.89 -19.99 -0.12 -8.98 16 14 C 0.36 21.92 6.91 25.60 0.18 22.10 16 15 O -0.60 -41.17 14.89 -4.74 -0.07 -41.24 16 16 C -0.54 -30.73 8.86 23.65 0.21 -30.52 16 17 H 0.10 4.81 6.01 -2.91 -0.02 4.79 16 18 C 0.02 1.14 5.50 85.40 0.47 1.61 16 19 N -0.79 -47.35 11.73 21.89 0.26 -47.10 16 20 Si 1.00 39.53 29.56 68.60 2.03 41.56 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 24 C -0.07 -2.95 9.59 22.53 0.22 -2.73 16 25 C -0.21 -7.32 8.21 22.34 0.18 -7.13 16 26 C -0.10 -2.16 9.35 22.27 0.21 -1.95 16 27 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 30 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 31 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.35 6.90 -2.38 -0.02 1.34 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.14 5.44 6.19 -2.91 -0.02 5.42 16 38 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 39 H 0.11 5.09 7.65 -2.91 -0.02 5.06 16 40 H 0.15 4.20 5.40 -2.91 -0.02 4.18 16 41 H 0.12 2.59 7.64 -2.91 -0.02 2.57 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -75.95 355.44 6.25 -69.69 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 1.03 Total: 26.72 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.81 Total: -40.04 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.26 Total: -47.10 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.87 Total: -50.83 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -75.95 6.25 -69.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.992 kcal (2) G-P(sol) polarization free energy of solvation -75.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds