Wall clock time and date at job start Tue Mar 31 2020 09:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47068 * 2 1 4 4 C 1.38350 * 119.93840 * 270.02799 * 3 2 1 5 5 C 1.38308 * 120.25663 * 179.97438 * 4 3 2 6 6 C 1.38029 * 120.12301 * 359.77865 * 5 4 3 7 7 C 1.39368 * 119.87110 * 0.45404 * 6 5 4 8 8 C 1.48313 * 120.12473 * 179.81079 * 7 6 5 9 9 C 1.39727 * 119.54655 * 179.73941 * 8 7 6 10 10 C 1.37814 * 121.15921 * 179.97438 * 9 8 7 11 11 C 1.39511 * 120.18971 * 0.02562 * 10 9 8 12 12 C 1.47168 * 120.44768 * 180.02562 * 11 10 9 13 13 O 1.21547 * 119.99869 * 176.28385 * 12 11 10 14 14 O 1.34824 * 119.99747 * 356.27945 * 12 11 10 15 15 C 1.45200 * 117.00058 * 179.97438 * 14 12 11 16 16 C 1.46491 * 119.10537 * 359.73605 * 11 10 9 17 17 C 1.40914 * 120.54352 * 180.29100 * 16 11 10 18 18 H 1.07995 * 120.00135 * 33.07669 * 17 16 11 19 19 C 1.40282 * 119.99668 * 213.06502 * 17 16 11 20 20 N 1.30624 * 120.00043 * 9.51568 * 19 17 16 21 21 Si 1.86798 * 119.99879 * 189.50221 * 19 17 16 22 22 H 1.48502 * 109.46737 * 90.00922 * 21 19 17 23 23 H 1.48500 * 109.46941 * 210.00482 * 21 19 17 24 24 H 1.48496 * 109.47567 * 330.00866 * 21 19 17 25 25 C 1.38724 * 119.54473 * 359.71724 * 8 7 6 26 26 C 1.37980 * 119.93596 * 89.99907 * 3 2 1 27 27 H 1.08995 * 109.47621 * 59.99684 * 1 2 3 28 28 H 1.09005 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46767 * 299.99312 * 1 2 3 30 30 H 1.09005 * 109.47188 * 240.00512 * 2 1 3 31 31 H 1.08995 * 109.47621 * 120.00316 * 2 1 3 32 32 H 1.08006 * 119.87498 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.94194 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.06457 * 180.23242 * 6 5 4 35 35 H 1.08007 * 119.41809 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.90374 * 180.02562 * 10 9 8 37 37 H 1.08995 * 109.47718 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47129 * 300.00845 * 15 14 12 39 39 H 1.09009 * 109.46796 * 60.00065 * 15 14 12 40 40 H 0.96996 * 120.00222 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.13432 * 359.97438 * 25 8 7 42 42 H 1.08001 * 120.06614 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0720 -1.1989 5 6 2.7224 3.3762 -1.2066 6 6 2.9512 4.0370 -0.0166 7 6 2.7264 3.3844 1.1942 8 6 2.9743 4.0878 2.4762 9 6 2.7396 3.4238 3.6830 10 6 2.9593 4.0453 4.8932 11 6 3.4236 5.3604 4.9325 12 6 3.6606 6.0293 6.2218 13 8 4.1289 7.1507 6.2475 14 8 3.3583 5.3984 7.3742 15 6 3.6192 6.1182 8.6080 16 6 3.6780 6.0641 3.6732 17 6 4.1531 7.3908 3.6775 18 1 4.8135 7.7253 4.4638 19 6 3.7683 8.2768 2.6603 20 7 2.8303 7.9360 1.8175 21 14 4.5970 9.9443 2.5113 22 1 5.7814 9.8307 1.6228 23 1 3.6394 10.9233 1.9370 24 1 5.0289 10.4044 3.8556 25 6 3.4366 5.3957 2.4606 26 6 2.2618 2.0700 1.1957 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0809 1.5600 -2.1325 33 1 2.8996 3.8798 -2.1454 34 1 3.3072 5.0566 -0.0237 35 1 2.3797 2.4056 3.6670 36 1 2.7715 3.5129 5.8139 37 1 3.3322 5.4989 9.4577 38 1 4.6812 6.3545 8.6732 39 1 3.0402 7.0418 8.6191 40 1 2.5645 8.5485 1.1140 41 1 3.6145 5.8967 1.5205 42 1 2.0814 1.5611 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241546687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:12 Heat of formation + Delta-G solvation = -58.205311 kcal Electronic energy + Delta-G solvation = -24530.142867 eV Core-core repulsion = 21018.059522 eV Total energy + Delta-G solvation = -3512.083345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.36630 -39.05139 -37.08852 -35.28056 -34.15274 -33.77884 -31.66172 -30.01823 -29.25429 -28.43186 -26.95164 -25.59544 -23.80042 -23.13290 -21.84541 -20.91988 -20.00397 -19.24699 -17.54252 -16.66974 -16.19691 -15.79361 -15.42483 -15.34161 -15.00777 -14.74691 -13.94288 -13.71898 -13.51742 -13.30770 -13.04429 -12.97418 -12.75164 -12.57240 -12.38902 -12.06732 -11.75111 -11.60755 -11.53197 -11.28785 -11.14762 -11.05968 -10.97349 -10.74728 -10.68884 -10.40603 -10.19332 -9.97252 -9.63806 -9.47931 -8.88452 -8.76006 -8.34802 -7.55933 -7.17411 -6.96490 -4.60321 1.34484 1.80866 2.39801 2.73081 2.99646 3.06062 3.15536 3.73739 3.78665 3.82225 4.30018 4.57916 4.92496 5.02147 5.31356 5.37397 5.41663 5.46279 5.58121 5.59261 5.61846 5.66974 5.81781 5.83288 5.84251 5.97433 6.03094 6.08846 6.22159 6.23360 6.30781 6.43438 6.55967 6.76200 6.84355 6.89224 6.93281 6.99615 7.10899 7.26988 7.37087 7.47796 7.56557 7.79378 7.85005 8.01734 8.44487 8.57817 8.66887 9.07435 9.90460 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.004427 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.287215 B = 6323.423610 C = 8416.183457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.016 4.016 8 C -0.026 4.026 9 C -0.241 4.241 10 C -0.028 4.028 11 C -0.260 4.260 12 C 0.503 3.497 13 O -0.522 6.522 14 O -0.374 6.374 15 C 0.041 3.959 16 C 0.147 3.853 17 C -0.407 4.407 18 H 0.112 0.888 19 C 0.068 3.932 20 N -0.777 5.777 21 Si 0.919 3.081 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.255 1.255 25 C -0.133 4.133 26 C -0.115 4.115 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.287 0.713 41 H 0.128 0.872 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -8.436 -2.712 9.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.153 4.153 5 C -0.137 4.137 6 C -0.133 4.133 7 C -0.016 4.016 8 C -0.026 4.026 9 C -0.260 4.260 10 C -0.047 4.047 11 C -0.263 4.263 12 C 0.354 3.646 13 O -0.413 6.413 14 O -0.293 6.293 15 C -0.054 4.054 16 C 0.143 3.857 17 C -0.434 4.434 18 H 0.130 0.870 19 C -0.153 4.153 20 N -0.401 5.401 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.179 1.179 25 C -0.152 4.152 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.753 -7.996 -2.872 8.675 hybrid contribution 0.183 0.933 0.027 0.951 sum -1.570 -7.063 -2.845 7.775 Atomic orbital electron populations 1.21748 0.95044 1.01210 1.02350 1.20491 0.95969 0.93066 1.02337 1.19726 1.00053 0.95944 0.93217 1.20886 1.02214 0.95251 0.96951 1.21002 1.00162 0.94804 0.97773 1.21414 0.99911 1.00370 0.91620 1.19125 0.96237 0.93051 0.93208 1.18572 0.99345 0.94008 0.90717 1.20224 1.14535 0.99678 0.91581 1.20716 0.94160 0.93279 0.96510 1.19750 1.20912 0.96849 0.88749 1.21287 0.75299 0.84311 0.83666 1.90707 1.43529 1.19891 1.87184 1.86586 1.79575 1.48018 1.15084 1.22968 1.01095 0.97074 0.84230 1.18375 0.86616 0.92245 0.88487 1.20412 1.21929 0.94355 1.06704 0.87003 1.26243 0.93721 1.01798 0.93541 1.69704 1.20900 1.37265 1.12200 0.86092 0.79654 0.79813 0.80166 1.18941 1.19996 1.17887 1.21468 1.03263 0.92013 0.98409 1.21137 1.00329 0.94469 0.97335 0.92698 0.92794 0.92402 0.91503 0.91272 0.86990 0.86599 0.85334 0.88406 0.87698 0.89449 0.92848 0.92779 0.90150 0.85410 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 37.16 0.37 -1.15 16 2 C -0.08 -0.92 6.06 -27.88 -0.17 -1.09 16 3 C -0.09 -1.30 5.13 -104.67 -0.54 -1.84 16 4 C -0.13 -1.92 9.69 -39.51 -0.38 -2.30 16 5 C -0.12 -1.83 10.03 -39.63 -0.40 -2.23 16 6 C -0.12 -2.10 9.41 -39.24 -0.37 -2.47 16 7 C -0.02 -0.32 5.88 -104.90 -0.62 -0.93 16 8 C -0.03 -0.57 5.86 -105.02 -0.62 -1.19 16 9 C -0.24 -5.13 9.37 -39.18 -0.37 -5.50 16 10 C -0.03 -0.62 9.60 -39.26 -0.38 -1.00 16 11 C -0.26 -6.44 6.07 -102.47 -0.62 -7.07 16 12 C 0.50 12.12 7.87 34.36 0.27 12.40 16 13 O -0.52 -13.55 13.47 -19.30 -0.26 -13.81 16 14 O -0.37 -7.66 9.83 -40.83 -0.40 -8.06 16 15 C 0.04 0.64 10.57 101.05 1.07 1.71 16 16 C 0.15 3.84 5.66 -104.69 -0.59 3.24 16 17 C -0.41 -10.74 7.95 -37.80 -0.30 -11.04 16 18 H 0.11 3.05 5.77 -52.49 -0.30 2.75 16 19 C 0.07 1.64 5.26 -17.30 -0.09 1.55 16 20 N -0.78 -18.89 11.08 55.56 0.62 -18.28 16 21 Si 0.92 18.51 29.57 -169.99 -5.03 13.49 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.13 -3.24 8.00 -38.53 -0.31 -3.55 16 26 C -0.11 -1.94 9.06 -39.24 -0.36 -2.29 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 2.43 6.15 -52.49 -0.32 2.11 16 35 H 0.10 1.81 6.10 -52.48 -0.32 1.49 16 36 H 0.10 2.07 7.62 -52.49 -0.40 1.67 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 41 H 0.13 3.11 4.60 -52.49 -0.24 2.87 16 42 H 0.12 1.93 6.14 -52.49 -0.32 1.61 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -28.46 352.44 -9.42 -37.88 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.26 Total: 8.22 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -4.40 Total: -24.75 kcal Atomic # 7 Polarization: -18.89 SS G_CDS: 0.62 Total: -18.28 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.66 Total: -21.87 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.46 -9.42 -37.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.327 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds