Wall clock time and date at job start Tue Mar 31 2020 09:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47068 * 2 1 4 4 C 1.38350 * 119.93840 * 270.02799 * 3 2 1 5 5 C 1.38308 * 120.25663 * 179.97438 * 4 3 2 6 6 C 1.38029 * 120.12301 * 359.77865 * 5 4 3 7 7 C 1.39368 * 119.87110 * 0.45404 * 6 5 4 8 8 C 1.48313 * 120.12473 * 179.81079 * 7 6 5 9 9 C 1.39727 * 119.54655 * 179.73941 * 8 7 6 10 10 C 1.37814 * 121.15921 * 179.97438 * 9 8 7 11 11 C 1.39511 * 120.18971 * 0.02562 * 10 9 8 12 12 C 1.47168 * 120.44768 * 180.02562 * 11 10 9 13 13 O 1.21547 * 119.99869 * 176.28385 * 12 11 10 14 14 O 1.34824 * 119.99747 * 356.27945 * 12 11 10 15 15 C 1.45200 * 117.00058 * 179.97438 * 14 12 11 16 16 C 1.46491 * 119.10537 * 359.73605 * 11 10 9 17 17 C 1.40914 * 120.54352 * 180.29100 * 16 11 10 18 18 H 1.07995 * 120.00135 * 33.07669 * 17 16 11 19 19 C 1.40282 * 119.99668 * 213.06502 * 17 16 11 20 20 N 1.30624 * 120.00043 * 9.51568 * 19 17 16 21 21 Si 1.86798 * 119.99879 * 189.50221 * 19 17 16 22 22 H 1.48502 * 109.46737 * 90.00922 * 21 19 17 23 23 H 1.48500 * 109.46941 * 210.00482 * 21 19 17 24 24 H 1.48496 * 109.47567 * 330.00866 * 21 19 17 25 25 C 1.38724 * 119.54473 * 359.71724 * 8 7 6 26 26 C 1.37980 * 119.93596 * 89.99907 * 3 2 1 27 27 H 1.08995 * 109.47621 * 59.99684 * 1 2 3 28 28 H 1.09005 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46767 * 299.99312 * 1 2 3 30 30 H 1.09005 * 109.47188 * 240.00512 * 2 1 3 31 31 H 1.08995 * 109.47621 * 120.00316 * 2 1 3 32 32 H 1.08006 * 119.87498 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.94194 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.06457 * 180.23242 * 6 5 4 35 35 H 1.08007 * 119.41809 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.90374 * 180.02562 * 10 9 8 37 37 H 1.08995 * 109.47718 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47129 * 300.00845 * 15 14 12 39 39 H 1.09009 * 109.46796 * 60.00065 * 15 14 12 40 40 H 0.96996 * 120.00222 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.13432 * 359.97438 * 25 8 7 42 42 H 1.08001 * 120.06614 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0720 -1.1989 5 6 2.7224 3.3762 -1.2066 6 6 2.9512 4.0370 -0.0166 7 6 2.7264 3.3844 1.1942 8 6 2.9743 4.0878 2.4762 9 6 2.7396 3.4238 3.6830 10 6 2.9593 4.0453 4.8932 11 6 3.4236 5.3604 4.9325 12 6 3.6606 6.0293 6.2218 13 8 4.1289 7.1507 6.2475 14 8 3.3583 5.3984 7.3742 15 6 3.6192 6.1182 8.6080 16 6 3.6780 6.0641 3.6732 17 6 4.1531 7.3908 3.6775 18 1 4.8135 7.7253 4.4638 19 6 3.7683 8.2768 2.6603 20 7 2.8303 7.9360 1.8175 21 14 4.5970 9.9443 2.5113 22 1 5.7814 9.8307 1.6228 23 1 3.6394 10.9233 1.9370 24 1 5.0289 10.4044 3.8556 25 6 3.4366 5.3957 2.4606 26 6 2.2618 2.0700 1.1957 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0809 1.5600 -2.1325 33 1 2.8996 3.8798 -2.1454 34 1 3.3072 5.0566 -0.0237 35 1 2.3797 2.4056 3.6670 36 1 2.7715 3.5129 5.8139 37 1 3.3322 5.4989 9.4577 38 1 4.6812 6.3545 8.6732 39 1 3.0402 7.0418 8.6191 40 1 2.5645 8.5485 1.1140 41 1 3.6145 5.8967 1.5205 42 1 2.0814 1.5611 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241546687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:11 Heat of formation + Delta-G solvation = -70.188078 kcal Electronic energy + Delta-G solvation = -24530.662479 eV Core-core repulsion = 21018.059522 eV Total energy + Delta-G solvation = -3512.602957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05970 -40.46942 -38.73155 -37.04158 -35.81157 -35.04093 -33.15238 -31.74884 -30.58521 -29.83447 -28.41505 -27.32938 -25.03224 -24.56121 -23.25681 -22.56926 -21.50769 -20.78733 -19.31279 -18.39619 -17.73017 -17.35403 -17.06953 -16.98723 -16.23656 -16.18826 -15.28979 -15.10045 -14.97718 -14.66580 -14.51240 -14.27313 -14.20994 -14.05661 -13.91981 -13.57794 -13.11680 -12.98758 -12.94769 -12.80201 -12.67488 -12.60230 -12.35339 -12.26082 -11.96146 -11.73661 -11.60586 -11.58632 -11.28813 -11.22750 -10.72718 -10.28175 -9.58914 -9.39565 -8.88862 -8.67022 -6.52129 -0.21761 0.55175 0.81852 0.97685 1.32131 1.44908 1.50286 2.04434 2.13723 2.14984 2.63441 3.01696 3.62783 3.85280 3.92038 4.03563 4.25501 4.32407 4.37819 4.39854 4.41975 4.49888 4.55900 4.61998 4.62266 4.68294 4.74907 4.77571 5.01539 5.03828 5.08464 5.13602 5.17328 5.24730 5.28308 5.43723 5.47311 5.55346 5.64170 5.66944 5.76936 5.80518 5.94250 6.09392 6.18972 6.26035 6.56785 6.69259 6.81074 7.25258 8.13640 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.004427 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.287215 B = 6323.423610 C = 8416.183457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.086 4.086 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.134 4.134 7 C -0.052 4.052 8 C -0.020 4.020 9 C -0.238 4.238 10 C -0.027 4.027 11 C -0.290 4.290 12 C 0.502 3.498 13 O -0.551 6.551 14 O -0.372 6.372 15 C 0.033 3.967 16 C 0.122 3.878 17 C -0.447 4.447 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.802 5.802 21 Si 0.983 3.017 22 H -0.251 1.251 23 H -0.259 1.259 24 H -0.270 1.270 25 C -0.163 4.163 26 C -0.118 4.118 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.296 0.704 41 H 0.118 0.882 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -11.079 -3.872 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.152 4.152 7 C -0.052 4.052 8 C -0.021 4.021 9 C -0.257 4.257 10 C -0.045 4.045 11 C -0.293 4.293 12 C 0.354 3.646 13 O -0.445 6.445 14 O -0.291 6.291 15 C -0.061 4.061 16 C 0.118 3.882 17 C -0.475 4.475 18 H 0.109 0.891 19 C -0.184 4.184 20 N -0.426 5.426 21 Si 0.803 3.197 22 H -0.175 1.175 23 H -0.183 1.183 24 H -0.194 1.194 25 C -0.182 4.182 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.136 0.864 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.748 -10.673 -4.023 11.732 hybrid contribution 0.404 1.509 0.390 1.610 sum -2.343 -9.164 -3.634 10.132 Atomic orbital electron populations 1.21743 0.94299 1.02473 1.01726 1.20575 0.96445 0.90774 1.03866 1.20152 0.98562 0.97548 0.92383 1.21354 0.99754 0.94517 0.98432 1.21294 0.99400 0.95530 0.97536 1.21403 1.01075 0.99910 0.92781 1.19119 0.99328 0.94533 0.92190 1.18965 0.96984 0.93316 0.92801 1.20637 1.13195 1.00949 0.90887 1.21009 0.93161 0.92359 0.98013 1.20108 1.21932 0.98232 0.89028 1.21286 0.74752 0.83896 0.84622 1.90681 1.44885 1.21103 1.87824 1.86537 1.78956 1.48084 1.15473 1.23391 1.01427 0.97946 0.83298 1.18756 0.86957 0.92712 0.89756 1.20389 1.23785 0.95484 1.07798 0.89108 1.26934 0.93932 1.04737 0.92777 1.69728 1.21525 1.38647 1.12700 0.85179 0.79291 0.75750 0.79461 1.17522 1.18267 1.19400 1.21403 1.05914 0.93308 0.97547 1.21283 0.99956 0.93372 0.98939 0.92668 0.90651 0.93731 0.89291 0.90542 0.83298 0.84120 0.87439 0.85131 0.85087 0.84687 0.92722 0.93053 0.89269 0.86435 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.89 71.98 0.71 -1.75 16 2 C -0.08 -1.45 6.06 29.85 0.18 -1.27 16 3 C -0.09 -2.23 5.13 -19.90 -0.10 -2.34 16 4 C -0.12 -3.04 9.69 22.31 0.22 -2.82 16 5 C -0.12 -3.46 10.03 22.24 0.22 -3.24 16 6 C -0.13 -4.95 9.41 22.49 0.21 -4.74 16 7 C -0.05 -2.02 5.88 -20.04 -0.12 -2.14 16 8 C -0.02 -0.91 5.86 -20.12 -0.12 -1.03 16 9 C -0.24 -10.06 9.37 22.53 0.21 -9.85 16 10 C -0.03 -1.21 9.60 22.48 0.22 -0.99 16 11 C -0.29 -15.02 6.07 -18.47 -0.11 -15.13 16 12 C 0.50 25.11 7.87 70.17 0.55 25.66 16 13 O -0.55 -30.15 13.47 19.68 0.27 -29.89 16 14 O -0.37 -15.21 9.83 -57.36 -0.56 -15.77 16 15 C 0.03 1.00 10.57 113.37 1.20 2.19 16 16 C 0.12 6.79 5.66 -19.91 -0.11 6.67 16 17 C -0.45 -25.31 7.95 23.42 0.19 -25.12 16 18 H 0.09 5.37 5.77 -2.91 -0.02 5.36 16 19 C 0.03 1.74 5.26 85.37 0.45 2.19 16 20 N -0.80 -41.05 11.08 21.88 0.24 -40.80 16 21 Si 0.98 39.62 29.57 68.60 2.03 41.65 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.16 -8.46 8.00 22.95 0.18 -8.27 16 26 C -0.12 -3.76 9.06 22.49 0.20 -3.56 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 31 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.11 4.35 6.15 -2.91 -0.02 4.34 16 35 H 0.13 4.57 6.10 -2.91 -0.02 4.56 16 36 H 0.13 5.01 7.62 -2.91 -0.02 4.99 16 37 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.30 13.52 8.29 -92.71 -0.77 12.75 16 41 H 0.12 6.20 4.60 -2.91 -0.01 6.19 16 42 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 Total: -1.00 -66.76 352.44 7.20 -59.56 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 1.04 Total: 30.79 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 4.18 Total: -45.54 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.24 Total: -40.80 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.30 Total: -45.66 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -66.76 7.20 -59.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.629 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds