Wall clock time and date at job start Tue Mar 31 2020 09:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36227 * 119.94020 * 2 1 4 4 C 1.40939 * 119.88354 * 179.97438 * 3 2 1 5 5 C 1.40995 * 120.11399 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00176 * 24.70118 * 5 4 3 7 7 C 1.39973 * 119.99746 * 204.69943 * 5 4 3 8 8 N 1.30822 * 119.99877 * 17.97627 * 7 5 4 9 9 Si 1.86799 * 119.99849 * 197.97456 * 7 5 4 10 10 H 1.48496 * 109.46996 * 90.00168 * 9 7 5 11 11 H 1.48501 * 109.46830 * 210.00253 * 9 7 5 12 12 H 1.48502 * 109.47026 * 330.00385 * 9 7 5 13 13 C 1.40969 * 119.77258 * 359.97438 * 4 3 2 14 14 C 1.36199 * 119.88192 * 359.74148 * 13 4 3 15 15 C 1.39982 * 119.94416 * 179.97438 * 2 1 3 16 16 C 1.47882 * 119.88124 * 0.02562 * 15 2 1 17 17 C 1.39697 * 120.04422 * 309.99371 * 16 15 2 18 18 C 1.37934 * 120.06818 * 179.97438 * 17 16 15 19 19 C 1.38748 * 119.90701 * 0.02562 * 18 17 16 20 20 C 1.39030 * 120.29566 * 0.04482 * 19 18 17 21 21 C 1.38099 * 120.20907 * 359.92765 * 20 19 18 22 22 O 1.36488 * 119.59426 * 179.89882 * 20 19 18 23 23 C 1.42895 * 115.92866 * 68.32992 * 22 20 19 24 24 C 1.52063 * 110.77515 * 275.58534 * 23 22 20 25 25 C 1.52064 * 112.36556 * 64.80382 * 24 23 22 26 26 O 1.36410 * 120.16063 * 180.02562 * 19 18 17 27 27 H 1.08999 * 109.47455 * 270.01889 * 1 2 3 28 28 H 1.09000 * 109.47298 * 30.02220 * 1 2 3 29 29 H 1.09008 * 109.47134 * 150.01941 * 1 2 3 30 30 H 1.07997 * 120.05943 * 359.95665 * 3 2 1 31 31 H 0.97000 * 119.99897 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.05805 * 180.02562 * 13 4 3 33 33 H 1.08003 * 119.93924 * 180.25172 * 14 13 4 34 34 H 1.07997 * 119.96402 * 359.67429 * 17 16 15 35 35 H 1.08000 * 120.04784 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.20049 * 180.02562 * 21 20 19 37 37 H 1.08997 * 109.22082 * 35.92418 * 23 22 20 38 38 H 1.09001 * 109.21746 * 155.25499 * 23 22 20 39 39 H 1.08997 * 108.90812 * 185.55320 * 24 23 22 40 40 H 1.09004 * 108.90089 * 304.16207 * 24 23 22 41 41 H 1.09001 * 109.20971 * 55.49240 * 25 24 23 42 42 H 1.09005 * 109.20812 * 174.80722 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1868 1.1805 0.0000 4 6 3.5962 1.1791 0.0005 5 6 4.3048 2.3980 0.0000 6 1 3.8415 3.2922 0.3901 7 6 5.6089 2.4492 -0.5061 8 7 6.0463 1.4933 -1.2848 9 14 6.7245 3.8824 -0.0695 10 1 7.4824 3.5611 1.1664 11 1 7.6752 4.1268 -1.1839 12 1 5.9027 5.0986 0.1558 13 6 4.2950 -0.0452 0.0016 14 6 3.6058 -1.2199 0.0075 15 6 2.2057 -1.2130 0.0005 16 6 1.4624 -2.4914 0.0005 17 6 0.4386 -2.7052 0.9266 18 6 -0.2554 -3.8972 0.9267 19 6 0.0651 -4.8844 0.0059 20 6 1.0839 -4.6782 -0.9174 21 6 1.7838 -3.4877 -0.9254 22 8 1.3886 -5.6598 -1.8154 23 6 0.3983 -5.9252 -2.8108 24 6 -0.6523 -6.8894 -2.2827 25 6 -1.4542 -6.2987 -1.1336 26 8 -0.6182 -6.0650 0.0010 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5136 30 1 1.6469 2.1158 -0.0007 31 1 6.9498 1.5289 -1.6358 32 1 5.3750 -0.0517 0.0025 33 1 4.1402 -2.1584 0.0124 34 1 0.1934 -1.9382 1.6464 35 1 -1.0466 -4.0623 1.6431 36 1 2.5750 -3.3275 -1.6429 37 1 -0.0837 -4.9901 -3.0958 38 1 0.8781 -6.3620 -3.6867 39 1 -1.3340 -7.1474 -3.0931 40 1 -0.1569 -7.7964 -1.9362 41 1 -1.8974 -5.3555 -1.4531 42 1 -2.2487 -6.9920 -0.8571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242208089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:52 Heat of formation + Delta-G solvation = -43.094060 kcal Electronic energy + Delta-G solvation = -24791.404092 eV Core-core repulsion = 21279.976020 eV Total energy + Delta-G solvation = -3511.428072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60857 -38.45833 -37.29908 -36.79182 -34.14919 -32.83046 -31.45830 -30.99303 -29.72600 -28.25145 -26.59191 -25.90346 -24.94839 -22.73020 -21.67904 -21.54953 -20.39228 -19.88955 -18.22269 -17.04697 -16.78942 -16.66967 -15.43876 -15.33062 -15.16956 -15.00022 -14.06195 -13.92746 -13.83423 -13.80506 -13.65160 -13.42875 -13.03951 -12.62139 -12.45328 -12.03471 -11.85484 -11.68185 -11.59473 -11.41587 -11.25708 -11.11057 -10.96170 -10.81303 -10.56706 -10.39330 -10.33868 -9.78760 -9.69150 -9.48576 -9.28994 -8.50325 -8.16675 -7.49787 -7.15846 -6.90696 -4.45337 1.35144 1.57803 2.65527 2.99964 3.01544 3.03453 3.09817 3.57737 3.63495 3.82407 4.17180 4.51380 4.54469 4.65250 5.00549 5.12609 5.19050 5.25455 5.41229 5.49672 5.55164 5.56514 5.67145 5.78710 5.80637 5.85055 5.94224 6.01774 6.16112 6.28606 6.33534 6.52555 6.55993 6.64101 6.85282 6.88063 6.95999 6.98648 7.21902 7.24566 7.30276 7.54122 7.77227 7.85524 7.95400 8.04109 8.16686 8.51400 8.74745 8.86007 10.01863 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.003060 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.026731 B = 9149.540565 C = 9733.644094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.035 4.035 3 C -0.228 4.228 4 C 0.121 3.879 5 C -0.451 4.451 6 H 0.081 0.919 7 C 0.075 3.925 8 N -0.780 5.780 9 Si 0.911 3.089 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.261 1.261 13 C -0.173 4.173 14 C -0.072 4.072 15 C -0.207 4.207 16 C 0.032 3.968 17 C -0.120 4.120 18 C -0.113 4.113 19 C 0.030 3.970 20 C 0.068 3.932 21 C -0.125 4.125 22 O -0.322 6.322 23 C 0.060 3.940 24 C -0.185 4.185 25 C 0.059 3.941 26 O -0.321 6.321 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.284 0.716 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 -9.941 -1.526 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.035 4.035 3 C -0.247 4.247 4 C 0.118 3.882 5 C -0.479 4.479 6 H 0.099 0.901 7 C -0.145 4.145 8 N -0.404 5.404 9 Si 0.735 3.265 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.185 1.185 13 C -0.192 4.192 14 C -0.091 4.091 15 C -0.208 4.208 16 C 0.031 3.969 17 C -0.138 4.138 18 C -0.132 4.132 19 C -0.013 4.013 20 C 0.024 3.976 21 C -0.144 4.144 22 O -0.238 6.238 23 C -0.015 4.015 24 C -0.223 4.223 25 C -0.016 4.016 26 O -0.238 6.238 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.172 -10.259 -1.566 14.532 hybrid contribution 0.420 0.653 -0.214 0.805 sum -9.752 -9.606 -1.780 13.804 Atomic orbital electron populations 1.20821 0.93819 1.01168 1.00720 1.19057 0.93468 0.92671 0.98272 1.20514 0.94189 0.95370 1.14628 1.17689 0.90927 0.93211 0.86373 1.19658 0.97555 0.96153 1.34579 0.90109 1.26000 0.98529 0.97433 0.92551 1.69828 1.17892 1.31672 1.21047 0.86265 0.79704 0.81386 0.79176 1.19084 1.20171 1.18468 1.20973 0.99740 0.91365 1.07102 1.20454 0.92364 0.97093 0.99156 1.17829 0.92472 0.89447 1.21101 1.18902 0.93066 0.93152 0.91744 1.21300 0.96900 0.96433 0.99153 1.20915 1.00752 0.91852 0.99664 1.19081 0.95377 0.87493 0.99376 1.19055 0.97127 0.89118 0.92263 1.21314 1.01734 0.90689 1.00618 1.86359 1.42603 1.53429 1.41428 1.22558 0.90142 0.98557 0.90266 1.22459 0.99241 1.01300 0.99275 1.22557 0.92073 1.00609 0.86382 1.86327 1.59775 1.35020 1.42644 0.92471 0.92880 0.92595 0.88787 0.90531 0.86396 0.89188 0.85291 0.85584 0.85104 0.92567 0.88295 0.89656 0.90107 0.92720 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 8.43 36.00 0.30 -1.56 16 2 C -0.03 -0.74 5.83 -104.70 -0.61 -1.35 16 3 C -0.23 -5.36 9.36 -39.28 -0.37 -5.73 16 4 C 0.12 3.10 5.57 -106.80 -0.60 2.50 16 5 C -0.45 -11.47 9.03 -37.89 -0.34 -11.81 16 6 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 7 C 0.07 1.79 5.13 -17.33 -0.09 1.71 16 8 N -0.78 -19.41 10.96 55.55 0.61 -18.81 16 9 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 12 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 13 C -0.17 -4.35 8.63 -39.28 -0.34 -4.69 16 14 C -0.07 -1.67 9.44 -39.65 -0.37 -2.04 16 15 C -0.21 -4.47 5.49 -104.63 -0.57 -5.05 16 16 C 0.03 0.59 4.72 -104.83 -0.49 0.10 16 17 C -0.12 -1.98 7.86 -39.15 -0.31 -2.28 16 18 C -0.11 -1.73 9.99 -39.50 -0.39 -2.12 16 19 C 0.03 0.49 5.74 -39.10 -0.22 0.27 16 20 C 0.07 1.17 5.72 -39.34 -0.23 0.94 16 21 C -0.13 -2.29 9.46 -39.06 -0.37 -2.66 16 22 O -0.32 -5.20 10.16 -36.73 -0.37 -5.57 16 23 C 0.06 0.70 6.51 36.68 0.24 0.94 16 24 C -0.18 -1.80 5.93 -27.69 -0.16 -1.97 16 25 C 0.06 0.64 6.51 36.68 0.24 0.88 16 26 O -0.32 -4.82 10.15 -36.47 -0.37 -5.19 16 27 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 28 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.06 0.92 6.43 -51.92 -0.33 0.59 16 30 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 32 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 33 H 0.09 1.94 8.04 -52.48 -0.42 1.51 16 34 H 0.13 1.99 6.83 -52.49 -0.36 1.63 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 2.42 8.04 -52.49 -0.42 2.00 16 37 H 0.06 0.64 7.93 -51.93 -0.41 0.23 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.57 7.93 -51.93 -0.41 0.16 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -27.84 343.35 -10.26 -38.10 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.58 Total: 7.34 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -4.69 Total: -33.92 kcal Atomic # 7 Polarization: -19.41 SS G_CDS: 0.61 Total: -18.81 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.74 Total: -10.76 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.84 -10.26 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242208089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.992 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds