Wall clock time and date at job start Tue Mar 31 2020 09:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36227 * 119.94020 * 2 1 4 4 C 1.40939 * 119.88354 * 179.97438 * 3 2 1 5 5 C 1.40995 * 120.11399 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00176 * 24.70118 * 5 4 3 7 7 C 1.39973 * 119.99746 * 204.69943 * 5 4 3 8 8 N 1.30822 * 119.99877 * 17.97627 * 7 5 4 9 9 Si 1.86799 * 119.99849 * 197.97456 * 7 5 4 10 10 H 1.48496 * 109.46996 * 90.00168 * 9 7 5 11 11 H 1.48501 * 109.46830 * 210.00253 * 9 7 5 12 12 H 1.48502 * 109.47026 * 330.00385 * 9 7 5 13 13 C 1.40969 * 119.77258 * 359.97438 * 4 3 2 14 14 C 1.36199 * 119.88192 * 359.74148 * 13 4 3 15 15 C 1.39982 * 119.94416 * 179.97438 * 2 1 3 16 16 C 1.47882 * 119.88124 * 0.02562 * 15 2 1 17 17 C 1.39697 * 120.04422 * 309.99371 * 16 15 2 18 18 C 1.37934 * 120.06818 * 179.97438 * 17 16 15 19 19 C 1.38748 * 119.90701 * 0.02562 * 18 17 16 20 20 C 1.39030 * 120.29566 * 0.04482 * 19 18 17 21 21 C 1.38099 * 120.20907 * 359.92765 * 20 19 18 22 22 O 1.36488 * 119.59426 * 179.89882 * 20 19 18 23 23 C 1.42895 * 115.92866 * 68.32992 * 22 20 19 24 24 C 1.52063 * 110.77515 * 275.58534 * 23 22 20 25 25 C 1.52064 * 112.36556 * 64.80382 * 24 23 22 26 26 O 1.36410 * 120.16063 * 180.02562 * 19 18 17 27 27 H 1.08999 * 109.47455 * 270.01889 * 1 2 3 28 28 H 1.09000 * 109.47298 * 30.02220 * 1 2 3 29 29 H 1.09008 * 109.47134 * 150.01941 * 1 2 3 30 30 H 1.07997 * 120.05943 * 359.95665 * 3 2 1 31 31 H 0.97000 * 119.99897 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.05805 * 180.02562 * 13 4 3 33 33 H 1.08003 * 119.93924 * 180.25172 * 14 13 4 34 34 H 1.07997 * 119.96402 * 359.67429 * 17 16 15 35 35 H 1.08000 * 120.04784 * 179.97438 * 18 17 16 36 36 H 1.07998 * 120.20049 * 180.02562 * 21 20 19 37 37 H 1.08997 * 109.22082 * 35.92418 * 23 22 20 38 38 H 1.09001 * 109.21746 * 155.25499 * 23 22 20 39 39 H 1.08997 * 108.90812 * 185.55320 * 24 23 22 40 40 H 1.09004 * 108.90089 * 304.16207 * 24 23 22 41 41 H 1.09001 * 109.20971 * 55.49240 * 25 24 23 42 42 H 1.09005 * 109.20812 * 174.80722 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1868 1.1805 0.0000 4 6 3.5962 1.1791 0.0005 5 6 4.3048 2.3980 0.0000 6 1 3.8415 3.2922 0.3901 7 6 5.6089 2.4492 -0.5061 8 7 6.0463 1.4933 -1.2848 9 14 6.7245 3.8824 -0.0695 10 1 7.4824 3.5611 1.1664 11 1 7.6752 4.1268 -1.1839 12 1 5.9027 5.0986 0.1558 13 6 4.2950 -0.0452 0.0016 14 6 3.6058 -1.2199 0.0075 15 6 2.2057 -1.2130 0.0005 16 6 1.4624 -2.4914 0.0005 17 6 0.4386 -2.7052 0.9266 18 6 -0.2554 -3.8972 0.9267 19 6 0.0651 -4.8844 0.0059 20 6 1.0839 -4.6782 -0.9174 21 6 1.7838 -3.4877 -0.9254 22 8 1.3886 -5.6598 -1.8154 23 6 0.3983 -5.9252 -2.8108 24 6 -0.6523 -6.8894 -2.2827 25 6 -1.4542 -6.2987 -1.1336 26 8 -0.6182 -6.0650 0.0010 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5136 30 1 1.6469 2.1158 -0.0007 31 1 6.9498 1.5289 -1.6358 32 1 5.3750 -0.0517 0.0025 33 1 4.1402 -2.1584 0.0124 34 1 0.1934 -1.9382 1.6464 35 1 -1.0466 -4.0623 1.6431 36 1 2.5750 -3.3275 -1.6429 37 1 -0.0837 -4.9901 -3.0958 38 1 0.8781 -6.3620 -3.6867 39 1 -1.3340 -7.1474 -3.0931 40 1 -0.1569 -7.7964 -1.9362 41 1 -1.8974 -5.3555 -1.4531 42 1 -2.2487 -6.9920 -0.8571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242208089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:51 Heat of formation + Delta-G solvation = -55.567063 kcal Electronic energy + Delta-G solvation = -24791.944962 eV Core-core repulsion = 21279.976020 eV Total energy + Delta-G solvation = -3511.968942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79123 -40.04197 -38.43320 -38.21773 -35.84423 -33.90695 -33.09973 -32.50068 -31.15404 -29.73172 -27.66683 -27.50682 -26.52270 -24.06901 -23.05472 -22.55044 -22.07775 -21.52143 -19.35537 -18.84066 -18.08320 -17.82897 -17.12272 -16.55110 -16.34428 -16.27032 -15.54588 -15.46794 -15.11270 -14.94793 -14.89945 -14.76219 -14.23324 -14.18262 -13.88482 -13.69539 -13.28490 -13.21852 -12.92576 -12.74716 -12.67852 -12.62667 -12.36751 -12.06926 -12.01058 -11.77787 -11.43985 -11.32887 -11.28610 -11.05872 -10.86053 -9.85168 -9.62429 -9.27356 -8.84360 -8.68495 -6.34522 0.01634 0.27711 0.97449 1.17470 1.37503 1.50999 1.51385 2.18028 2.39398 2.52037 2.68845 2.95708 3.68448 3.74175 3.78970 3.96628 4.05318 4.22974 4.31384 4.35808 4.36848 4.40281 4.40554 4.50331 4.52398 4.70410 4.72099 4.80828 4.93370 4.97495 4.99844 5.08951 5.11210 5.15290 5.24166 5.28553 5.34799 5.47424 5.58405 5.65902 5.75365 6.03393 6.11248 6.17340 6.23930 6.34811 6.62667 6.66236 6.88676 7.01343 8.26387 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.003060 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.026731 B = 9149.540565 C = 9733.644094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.039 4.039 3 C -0.243 4.243 4 C 0.090 3.910 5 C -0.490 4.490 6 H 0.080 0.920 7 C 0.034 3.966 8 N -0.817 5.817 9 Si 0.984 3.016 10 H -0.262 1.262 11 H -0.268 1.268 12 H -0.255 1.255 13 C -0.197 4.197 14 C -0.083 4.083 15 C -0.198 4.198 16 C 0.008 3.992 17 C -0.111 4.111 18 C -0.106 4.106 19 C 0.039 3.961 20 C 0.062 3.938 21 C -0.136 4.136 22 O -0.345 6.345 23 C 0.047 3.953 24 C -0.180 4.180 25 C 0.049 3.951 26 O -0.336 6.336 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.290 0.710 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.272 -11.315 -1.276 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.039 4.039 3 C -0.263 4.263 4 C 0.088 3.912 5 C -0.518 4.518 6 H 0.098 0.902 7 C -0.182 4.182 8 N -0.442 5.442 9 Si 0.805 3.195 10 H -0.187 1.187 11 H -0.192 1.192 12 H -0.179 1.179 13 C -0.216 4.216 14 C -0.101 4.101 15 C -0.199 4.199 16 C 0.008 3.992 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.005 4.005 20 C 0.018 3.982 21 C -0.155 4.155 22 O -0.262 6.262 23 C -0.027 4.027 24 C -0.217 4.217 25 C -0.025 4.025 26 O -0.253 6.253 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.923 -11.653 -1.327 17.451 hybrid contribution 1.060 0.755 -0.361 1.351 sum -11.863 -10.898 -1.688 16.197 Atomic orbital electron populations 1.20830 0.90297 1.02148 1.02564 1.19519 0.96087 0.91685 0.96577 1.20726 0.93647 0.96684 1.15198 1.18021 0.92245 0.93538 0.87433 1.19879 0.99125 0.96227 1.36603 0.90181 1.26846 0.99416 1.00168 0.91761 1.69887 1.18577 1.33680 1.22085 0.85169 0.77546 0.77863 0.78968 1.18716 1.19219 1.17904 1.20898 0.99042 0.92353 1.09312 1.20633 0.93642 0.96633 0.99212 1.18147 0.91977 0.91222 1.18521 1.18753 0.94597 0.92153 0.93712 1.21385 0.95655 0.97405 0.98411 1.21183 1.00874 0.90767 0.99552 1.19254 0.94790 0.87941 0.98519 1.19103 0.97151 0.88867 0.93070 1.21217 1.01906 0.91604 1.00756 1.86310 1.44759 1.52973 1.42159 1.22931 0.90325 0.99404 0.90021 1.22447 0.99113 1.00089 1.00080 1.22930 0.92205 1.01822 0.85568 1.86290 1.60151 1.34228 1.44660 0.90012 0.91847 0.91644 0.88105 0.89939 0.88303 0.88613 0.83906 0.82409 0.86642 0.92506 0.86209 0.85932 0.90675 0.92148 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.27 8.43 71.23 0.60 -2.67 16 2 C -0.04 -1.65 5.83 -19.91 -0.12 -1.76 16 3 C -0.24 -11.76 9.36 22.46 0.21 -11.55 16 4 C 0.09 4.87 5.57 -21.27 -0.12 4.75 16 5 C -0.49 -26.19 9.03 23.37 0.21 -25.98 16 6 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 7 C 0.03 1.71 5.13 85.26 0.44 2.15 16 8 N -0.82 -42.79 10.96 21.83 0.24 -42.56 16 9 Si 0.98 37.75 29.60 68.60 2.03 39.78 16 10 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 12 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 13 C -0.20 -10.56 8.63 22.46 0.19 -10.37 16 14 C -0.08 -4.01 9.44 22.23 0.21 -3.80 16 15 C -0.20 -8.63 5.49 -19.87 -0.11 -8.74 16 16 C 0.01 0.30 4.72 -20.00 -0.09 0.20 16 17 C -0.11 -3.37 7.86 22.55 0.18 -3.20 16 18 C -0.11 -2.86 9.99 22.32 0.22 -2.64 16 19 C 0.04 1.16 5.74 22.58 0.13 1.29 16 20 C 0.06 2.06 5.72 22.43 0.13 2.19 16 21 C -0.14 -5.00 9.46 22.61 0.21 -4.78 16 22 O -0.34 -10.81 10.16 -84.44 -0.86 -11.67 16 23 C 0.05 1.00 6.51 71.67 0.47 1.47 16 24 C -0.18 -2.87 5.93 29.98 0.18 -2.69 16 25 C 0.05 0.87 6.51 71.67 0.47 1.34 16 26 O -0.34 -9.01 10.15 -83.53 -0.85 -9.86 16 27 H 0.08 2.24 7.48 -2.39 -0.02 2.22 16 28 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 29 H 0.06 1.98 6.43 -2.38 -0.02 1.96 16 30 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 32 H 0.10 5.56 6.16 -2.91 -0.02 5.55 16 33 H 0.10 4.37 8.04 -2.91 -0.02 4.34 16 34 H 0.14 3.94 6.83 -2.91 -0.02 3.92 16 35 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.12 4.47 8.04 -2.91 -0.02 4.45 16 37 H 0.06 1.19 7.93 -2.39 -0.02 1.17 16 38 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.03 7.93 -2.39 -0.02 1.01 16 42 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -63.89 343.35 5.00 -58.89 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 1.03 Total: 30.20 kcal Atomic # 6 Polarization: -68.19 SS G_CDS: 3.41 Total: -64.79 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.24 Total: -42.56 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.71 Total: -21.53 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -63.89 5.00 -58.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242208089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.326 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds