Wall clock time and date at job start Tue Mar 31 2020 11:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35849 * 117.00160 * 2 1 4 4 C 1.38561 * 120.12331 * 0.30136 * 3 2 1 5 5 C 1.38202 * 120.07069 * 180.31972 * 4 3 2 6 6 C 1.38396 * 120.31042 * 359.67694 * 5 4 3 7 7 C 1.37992 * 120.24270 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.03627 * 180.02562 * 7 6 5 9 9 C 1.52999 * 117.49749 * 8.72801 * 8 7 6 10 10 C 1.52996 * 117.49839 * 300.06723 * 8 7 6 11 11 C 1.39352 * 119.92937 * 0.02562 * 7 6 5 12 12 C 1.48230 * 120.15947 * 179.97438 * 11 7 6 13 13 C 1.39309 * 120.15634 * 89.97555 * 12 11 7 14 14 C 1.38015 * 119.94248 * 180.02562 * 13 12 11 15 15 C 1.38449 * 120.27038 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.32767 * 359.97438 * 15 14 13 17 17 C 1.38743 * 120.04918 * 0.02562 * 16 15 14 18 18 O 1.35678 * 120.13068 * 179.97438 * 17 16 15 19 19 C 1.34811 * 117.00182 * 354.40030 * 18 17 16 20 20 H 1.07994 * 119.99759 * 5.06762 * 19 18 17 21 21 C 1.38640 * 119.99934 * 185.05960 * 19 18 17 22 22 N 1.31572 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00133 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47157 * 90.00009 * 23 21 19 25 25 H 1.48501 * 109.47273 * 210.00039 * 23 21 19 26 26 H 1.48494 * 109.46941 * 329.99947 * 23 21 19 27 27 H 1.09003 * 109.47246 * 299.99712 * 1 2 3 28 28 H 1.09000 * 109.47316 * 59.99497 * 1 2 3 29 29 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.96372 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.84397 * 179.70246 * 5 4 3 32 32 H 1.07996 * 119.87313 * 180.02562 * 6 5 4 33 33 H 1.09000 * 115.54830 * 154.39823 * 8 7 6 34 34 H 1.08996 * 117.49814 * 359.97438 * 9 8 7 35 35 H 1.08998 * 117.49911 * 145.02603 * 9 8 7 36 36 H 1.09000 * 117.49778 * 214.98367 * 10 8 7 37 37 H 1.09004 * 117.49869 * 359.97438 * 10 8 7 38 38 H 1.08003 * 120.03247 * 0.05675 * 13 12 11 39 39 H 1.07997 * 119.87192 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.83968 * 180.27783 * 15 14 13 41 41 H 1.08000 * 119.97365 * 180.02562 * 16 15 14 42 42 H 0.96992 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2936 2.3741 0.0063 5 6 1.9222 3.6049 -0.0004 6 6 3.3039 3.6835 -0.0066 7 6 4.0655 2.5329 -0.0057 8 6 5.5698 2.6239 -0.0120 9 6 6.1946 4.0063 0.1868 10 6 6.2292 3.3413 -1.1915 11 6 3.4422 1.2865 0.0010 12 6 4.2554 0.0472 0.0014 13 6 4.6450 -0.5338 1.2061 14 6 5.4026 -1.6875 1.2014 15 6 5.7782 -2.2708 0.0033 16 6 5.3981 -1.7042 -1.1977 17 6 4.6365 -0.5445 -1.2086 18 8 4.2627 0.0137 -2.3873 19 6 4.7595 -0.5399 -3.5116 20 1 5.3567 -1.4378 -3.4530 21 6 4.5037 0.0433 -4.7431 22 7 3.7764 1.1375 -4.8145 23 14 5.1915 -0.7241 -6.3010 24 1 4.2166 -1.7051 -6.8417 25 1 5.4363 0.3379 -7.3097 26 1 6.4685 -1.4153 -5.9902 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2150 2.3192 0.0116 31 1 1.3323 4.5096 -0.0003 32 1 3.7877 4.6491 -0.0114 33 1 6.0943 1.7685 0.4138 34 1 5.5178 4.8498 0.3216 35 1 7.1305 4.0603 0.7429 36 1 7.1877 2.9580 -1.5416 37 1 5.5750 3.7470 -1.9633 38 1 4.3541 -0.0822 2.1431 39 1 5.7036 -2.1371 2.1360 40 1 6.3672 -3.1759 0.0077 41 1 5.6940 -2.1642 -2.1289 42 1 3.5978 1.5457 -5.6760 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244254630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:22 Heat of formation + Delta-G solvation = 16.225178 kcal Electronic energy + Delta-G solvation = -25989.667153 eV Core-core repulsion = 22480.811356 eV Total energy + Delta-G solvation = -3508.855797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.99999 -38.63650 -37.81192 -36.21089 -35.56090 -32.32604 -31.94337 -29.39965 -29.07516 -28.15295 -26.85804 -25.26161 -23.28512 -22.74230 -21.88463 -21.34634 -20.45903 -19.66505 -17.85200 -17.40545 -16.75083 -15.94306 -15.62274 -15.28180 -14.98620 -14.57417 -14.42588 -14.16455 -13.95830 -13.49920 -13.48308 -13.05880 -12.79150 -12.58886 -12.26104 -12.11797 -11.63377 -11.53456 -11.30193 -11.19734 -11.03970 -10.90117 -10.83486 -10.70977 -10.66799 -10.41357 -10.21863 -10.02634 -9.93820 -9.25027 -8.77728 -7.99793 -7.95680 -7.57938 -7.10903 -6.37403 -3.95394 1.79798 1.97928 2.21526 2.49107 3.15307 3.16158 3.20372 3.73462 4.01065 4.06262 4.52402 4.62695 5.05683 5.14973 5.20426 5.32344 5.35193 5.36357 5.38777 5.45479 5.50394 5.52298 5.70672 5.74255 5.76484 5.83292 5.93114 5.99043 6.14836 6.21529 6.31494 6.38190 6.45402 6.49609 6.59938 6.78075 6.79846 6.87720 6.94699 7.14480 7.15722 7.25195 7.36076 7.45251 7.48946 7.88749 7.95886 8.06527 9.07653 9.81013 10.79704 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.006165 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.864990 B = 4540.508358 C = 4718.306250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.303 6.303 3 C 0.146 3.854 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.161 4.161 7 C 0.005 3.995 8 C -0.106 4.106 9 C -0.185 4.185 10 C -0.154 4.154 11 C -0.033 4.033 12 C -0.113 4.113 13 C -0.060 4.060 14 C -0.216 4.216 15 C -0.073 4.073 16 C -0.237 4.237 17 C 0.172 3.828 18 O -0.163 6.163 19 C -0.390 4.390 20 H 0.089 0.911 21 C 0.042 3.958 22 N -0.857 5.857 23 Si 0.935 3.065 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 2.589 9.654 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.215 6.215 3 C 0.101 3.899 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.179 4.179 7 C 0.005 3.995 8 C -0.124 4.124 9 C -0.222 4.222 10 C -0.191 4.191 11 C -0.033 4.033 12 C -0.114 4.114 13 C -0.079 4.079 14 C -0.235 4.235 15 C -0.091 4.091 16 C -0.256 4.256 17 C 0.118 3.882 18 O -0.065 6.065 19 C -0.467 4.467 20 H 0.106 0.894 21 C -0.162 4.162 22 N -0.491 5.491 23 Si 0.760 3.240 24 H -0.200 1.200 25 H -0.203 1.203 26 H -0.193 1.193 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.565 2.749 9.389 9.908 hybrid contribution 0.001 -0.426 -0.989 1.077 sum -1.564 2.323 8.401 8.855 Atomic orbital electron populations 1.22976 0.79524 1.03370 1.00754 1.86158 1.20250 1.26793 1.88317 1.18986 0.91495 0.83983 0.95472 1.21005 0.99367 0.92432 1.10838 1.20728 0.94344 0.96499 0.98721 1.20724 0.93548 0.97679 1.05981 1.18905 0.93139 0.91351 0.96084 1.20891 0.91306 0.95946 1.04222 1.23074 1.02316 0.95883 1.00938 1.22922 1.02235 1.02702 0.91246 1.17612 0.88975 0.92569 1.04162 1.17503 1.06078 0.96920 0.90935 1.20634 0.96707 0.95021 0.95488 1.20461 1.06711 0.99340 0.96980 1.20761 0.97906 0.98111 0.92345 1.21093 1.06766 0.99299 0.98480 1.19293 0.91172 0.90794 0.86951 1.84003 1.60567 1.51552 1.10412 1.21290 1.32935 1.10126 0.82337 0.89355 1.25206 0.96834 0.95912 0.98269 1.70066 1.35399 1.18054 1.25629 0.85810 0.79206 0.78551 0.80465 1.20021 1.20334 1.19255 0.93292 0.92866 0.88756 0.86103 0.86484 0.86316 0.86913 0.88760 0.88986 0.88780 0.88314 0.87329 0.87724 0.87706 0.85628 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.05 9.95 -19.26 -0.19 -6.24 16 3 C 0.15 2.99 6.69 -38.86 -0.26 2.73 16 4 C -0.22 -3.80 9.03 -39.48 -0.36 -4.16 16 5 C -0.08 -1.39 10.03 -39.54 -0.40 -1.79 16 6 C -0.16 -2.80 9.29 -39.61 -0.37 -3.16 16 7 C 0.01 0.11 5.64 -104.30 -0.59 -0.48 16 8 C -0.11 -1.91 5.54 -91.77 -0.51 -2.42 16 9 C -0.19 -2.67 9.86 -26.69 -0.26 -2.93 16 10 C -0.15 -2.70 10.17 -26.69 -0.27 -2.97 16 11 C -0.03 -0.70 4.85 -104.77 -0.51 -1.21 16 12 C -0.11 -2.50 3.47 -104.74 -0.36 -2.87 16 13 C -0.06 -1.16 9.66 -39.26 -0.38 -1.54 16 14 C -0.22 -3.92 10.03 -39.59 -0.40 -4.32 16 15 C -0.07 -1.39 10.03 -39.55 -0.40 -1.79 16 16 C -0.24 -5.33 9.16 -39.44 -0.36 -5.69 16 17 C 0.17 4.28 6.65 -38.74 -0.26 4.02 16 18 O -0.16 -4.68 9.21 0.33 0.00 -4.67 16 19 C -0.39 -10.98 9.49 30.88 0.29 -10.69 16 20 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 21 C 0.04 1.17 5.49 -17.51 -0.10 1.07 16 22 N -0.86 -25.13 13.67 55.48 0.76 -24.38 16 23 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 28 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.12 1.76 6.30 -52.49 -0.33 1.43 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.76 6.01 -52.49 -0.32 1.45 16 33 H 0.11 2.11 7.24 -51.93 -0.38 1.73 16 34 H 0.09 1.23 6.18 -51.93 -0.32 0.91 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 37 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 38 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -32.18 353.60 -8.84 -41.02 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.23 Total: 9.99 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: -4.49 Total: -36.79 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.38 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.19 Total: -10.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.18 -8.84 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244254630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.243 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds