Wall clock time and date at job start Tue Mar 31 2020 11:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35849 * 117.00160 * 2 1 4 4 C 1.38561 * 120.12331 * 0.30136 * 3 2 1 5 5 C 1.38202 * 120.07069 * 180.31972 * 4 3 2 6 6 C 1.38396 * 120.31042 * 359.67694 * 5 4 3 7 7 C 1.37992 * 120.24270 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.03627 * 180.02562 * 7 6 5 9 9 C 1.52999 * 117.49749 * 8.72801 * 8 7 6 10 10 C 1.52996 * 117.49839 * 300.06723 * 8 7 6 11 11 C 1.39352 * 119.92937 * 0.02562 * 7 6 5 12 12 C 1.48230 * 120.15947 * 179.97438 * 11 7 6 13 13 C 1.39309 * 120.15634 * 89.97555 * 12 11 7 14 14 C 1.38015 * 119.94248 * 180.02562 * 13 12 11 15 15 C 1.38449 * 120.27038 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.32767 * 359.97438 * 15 14 13 17 17 C 1.38743 * 120.04918 * 0.02562 * 16 15 14 18 18 O 1.35678 * 120.13068 * 179.97438 * 17 16 15 19 19 C 1.34811 * 117.00182 * 354.40030 * 18 17 16 20 20 H 1.07994 * 119.99759 * 5.06762 * 19 18 17 21 21 C 1.38640 * 119.99934 * 185.05960 * 19 18 17 22 22 N 1.31572 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00133 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47157 * 90.00009 * 23 21 19 25 25 H 1.48501 * 109.47273 * 210.00039 * 23 21 19 26 26 H 1.48494 * 109.46941 * 329.99947 * 23 21 19 27 27 H 1.09003 * 109.47246 * 299.99712 * 1 2 3 28 28 H 1.09000 * 109.47316 * 59.99497 * 1 2 3 29 29 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.96372 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.84397 * 179.70246 * 5 4 3 32 32 H 1.07996 * 119.87313 * 180.02562 * 6 5 4 33 33 H 1.09000 * 115.54830 * 154.39823 * 8 7 6 34 34 H 1.08996 * 117.49814 * 359.97438 * 9 8 7 35 35 H 1.08998 * 117.49911 * 145.02603 * 9 8 7 36 36 H 1.09000 * 117.49778 * 214.98367 * 10 8 7 37 37 H 1.09004 * 117.49869 * 359.97438 * 10 8 7 38 38 H 1.08003 * 120.03247 * 0.05675 * 13 12 11 39 39 H 1.07997 * 119.87192 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.83968 * 180.27783 * 15 14 13 41 41 H 1.08000 * 119.97365 * 180.02562 * 16 15 14 42 42 H 0.96992 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2936 2.3741 0.0063 5 6 1.9222 3.6049 -0.0004 6 6 3.3039 3.6835 -0.0066 7 6 4.0655 2.5329 -0.0057 8 6 5.5698 2.6239 -0.0120 9 6 6.1946 4.0063 0.1868 10 6 6.2292 3.3413 -1.1915 11 6 3.4422 1.2865 0.0010 12 6 4.2554 0.0472 0.0014 13 6 4.6450 -0.5338 1.2061 14 6 5.4026 -1.6875 1.2014 15 6 5.7782 -2.2708 0.0033 16 6 5.3981 -1.7042 -1.1977 17 6 4.6365 -0.5445 -1.2086 18 8 4.2627 0.0137 -2.3873 19 6 4.7595 -0.5399 -3.5116 20 1 5.3567 -1.4378 -3.4530 21 6 4.5037 0.0433 -4.7431 22 7 3.7764 1.1375 -4.8145 23 14 5.1915 -0.7241 -6.3010 24 1 4.2166 -1.7051 -6.8417 25 1 5.4363 0.3379 -7.3097 26 1 6.4685 -1.4153 -5.9902 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2150 2.3192 0.0116 31 1 1.3323 4.5096 -0.0003 32 1 3.7877 4.6491 -0.0114 33 1 6.0943 1.7685 0.4138 34 1 5.5178 4.8498 0.3216 35 1 7.1305 4.0603 0.7429 36 1 7.1877 2.9580 -1.5416 37 1 5.5750 3.7470 -1.9633 38 1 4.3541 -0.0822 2.1431 39 1 5.7036 -2.1371 2.1360 40 1 6.3672 -3.1759 0.0077 41 1 5.6940 -2.1642 -2.1289 42 1 3.5978 1.5457 -5.6760 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244254630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:18 Heat of formation + Delta-G solvation = -1.083758 kcal Electronic energy + Delta-G solvation = -25990.417725 eV Core-core repulsion = 22480.811356 eV Total energy + Delta-G solvation = -3509.606369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.45810 -40.30820 -39.19314 -37.96340 -36.90206 -34.25987 -33.51669 -30.79616 -30.67637 -29.70229 -28.10582 -27.27061 -24.68637 -24.15862 -23.22022 -23.08181 -21.96968 -21.04945 -19.74076 -18.97054 -18.34709 -17.32582 -17.10982 -16.65200 -16.43596 -16.23498 -16.14175 -15.65668 -15.41895 -15.21228 -15.08241 -14.49589 -14.40593 -14.14014 -13.60404 -13.58132 -13.43960 -13.04556 -12.79743 -12.59772 -12.49284 -12.39415 -12.30534 -12.22440 -12.13287 -12.06948 -11.69546 -11.36450 -11.26709 -11.05686 -10.76799 -9.59485 -9.37544 -8.98911 -8.87656 -8.40927 -6.07027 0.40087 0.55872 0.60162 0.82367 1.32478 1.41550 1.48774 2.17937 2.44653 2.70019 2.87532 3.16548 3.21971 3.58055 3.74011 3.86367 4.01573 4.07231 4.16072 4.17713 4.24738 4.25588 4.31188 4.36548 4.43900 4.47513 4.64964 4.66324 4.74670 4.78717 4.89235 4.94521 5.07561 5.11841 5.14563 5.17733 5.24281 5.29738 5.46407 5.53464 5.70880 5.72209 5.75856 5.80680 5.96960 6.07484 6.28265 6.58997 7.03108 7.88798 8.80962 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.006165 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.864990 B = 4540.508358 C = 4718.306250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.122 3.878 4 C -0.223 4.223 5 C -0.081 4.081 6 C -0.169 4.169 7 C -0.012 4.012 8 C -0.127 4.127 9 C -0.139 4.139 10 C -0.175 4.175 11 C -0.074 4.074 12 C -0.110 4.110 13 C -0.067 4.067 14 C -0.191 4.191 15 C -0.074 4.074 16 C -0.253 4.253 17 C 0.132 3.868 18 O -0.211 6.211 19 C -0.411 4.411 20 H 0.094 0.906 21 C -0.016 4.016 22 N -0.911 5.911 23 Si 1.008 2.992 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.255 1.255 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.116 0.884 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 2.714 11.767 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.077 3.923 4 C -0.241 4.241 5 C -0.099 4.099 6 C -0.186 4.186 7 C -0.012 4.012 8 C -0.145 4.145 9 C -0.175 4.175 10 C -0.213 4.213 11 C -0.075 4.075 12 C -0.111 4.111 13 C -0.085 4.085 14 C -0.209 4.209 15 C -0.092 4.092 16 C -0.272 4.272 17 C 0.081 3.919 18 O -0.116 6.116 19 C -0.487 4.487 20 H 0.111 0.889 21 C -0.214 4.214 22 N -0.549 5.549 23 Si 0.828 3.172 24 H -0.191 1.191 25 H -0.196 1.196 26 H -0.179 1.179 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.153 2.845 11.558 11.959 hybrid contribution -0.143 -0.533 -1.342 1.451 sum -1.296 2.313 10.217 10.555 Atomic orbital electron populations 1.23274 0.77043 1.05068 1.01932 1.86087 1.23028 1.27338 1.88542 1.19287 0.91662 0.85046 0.96320 1.21381 1.00754 0.91952 1.10025 1.21238 0.94406 0.97600 0.96665 1.21093 0.94221 0.98006 1.05323 1.19202 0.94061 0.91649 0.96264 1.20873 0.90875 0.97742 1.04997 1.23201 1.03001 0.93973 0.97327 1.22845 1.01694 1.04568 0.92154 1.17934 0.89920 0.93071 1.06587 1.17859 1.05191 0.97198 0.90869 1.21030 0.96558 0.95498 0.95461 1.21013 1.03724 0.97828 0.98376 1.21153 0.97671 0.99119 0.91249 1.21252 1.07112 0.99110 0.99751 1.19853 0.92934 0.92153 0.86942 1.83976 1.62924 1.53316 1.11420 1.21720 1.33266 1.10562 0.83153 0.88882 1.26382 0.97086 0.96391 1.01545 1.70217 1.37985 1.20237 1.26440 0.84735 0.78915 0.77830 0.75689 1.19106 1.19578 1.17901 0.90529 0.93088 0.86959 0.83376 0.82539 0.83759 0.88364 0.86805 0.86212 0.89043 0.90752 0.84984 0.83321 0.83965 0.86650 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.34 -13.81 9.95 -91.85 -0.91 -14.73 16 3 C 0.12 5.11 6.69 22.74 0.15 5.26 16 4 C -0.22 -7.63 9.03 22.34 0.20 -7.43 16 5 C -0.08 -2.53 10.03 22.30 0.22 -2.31 16 6 C -0.17 -5.70 9.29 22.25 0.21 -5.50 16 7 C -0.01 -0.47 5.64 -19.65 -0.11 -0.58 16 8 C -0.13 -4.66 5.54 -11.54 -0.06 -4.72 16 9 C -0.14 -3.74 9.86 30.62 0.30 -3.44 16 10 C -0.18 -6.36 10.17 30.62 0.31 -6.05 16 11 C -0.07 -3.31 4.85 -19.96 -0.10 -3.41 16 12 C -0.11 -5.02 3.47 -19.94 -0.07 -5.09 16 13 C -0.07 -2.54 9.66 22.47 0.22 -2.32 16 14 C -0.19 -6.40 10.03 22.27 0.22 -6.18 16 15 C -0.07 -2.70 10.03 22.29 0.22 -2.48 16 16 C -0.25 -11.71 9.16 22.36 0.20 -11.50 16 17 C 0.13 6.92 6.65 22.81 0.15 7.07 16 18 O -0.21 -12.98 9.21 -21.74 -0.20 -13.18 16 19 C -0.41 -24.55 9.49 67.92 0.64 -23.91 16 20 H 0.09 5.20 5.21 -2.91 -0.02 5.19 16 21 C -0.02 -0.93 5.49 84.83 0.47 -0.46 16 22 N -0.91 -56.63 13.67 21.61 0.30 -56.34 16 23 Si 1.01 44.19 29.55 68.60 2.03 46.21 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 27 H 0.08 1.69 7.65 -2.39 -0.02 1.67 16 28 H 0.05 1.43 7.68 -2.39 -0.02 1.41 16 29 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.15 4.06 6.30 -2.91 -0.02 4.05 16 31 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.14 3.97 6.01 -2.91 -0.02 3.95 16 33 H 0.10 3.79 7.24 -2.39 -0.02 3.77 16 34 H 0.11 2.63 6.18 -2.39 -0.01 2.62 16 35 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 39 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 40 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.11 353.60 6.55 -70.56 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 1.04 Total: 38.81 kcal Atomic # 6 Polarization: -75.64 SS G_CDS: 4.30 Total: -71.34 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.30 Total: -56.34 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.11 Total: -27.91 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -77.11 6.55 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244254630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.478 kcal (2) G-P(sol) polarization free energy of solvation -77.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds