Wall clock time and date at job start Tue Mar 31 2020 11:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35912 * 116.99627 * 2 1 4 4 C 1.38526 * 119.99320 * 359.97438 * 3 2 1 5 5 C 1.39295 * 119.81355 * 179.97438 * 4 3 2 6 6 C 1.48286 * 120.09830 * 179.97438 * 5 4 3 7 7 C 1.39289 * 120.16123 * 310.00665 * 6 5 4 8 8 C 1.38007 * 119.94678 * 179.97438 * 7 6 5 9 9 C 1.38451 * 120.27043 * 0.02562 * 8 7 6 10 10 C 1.38103 * 120.32332 * 0.02562 * 9 8 7 11 11 C 1.38759 * 120.04928 * 359.67893 * 10 9 8 12 12 O 1.35668 * 120.13949 * 180.32044 * 11 10 9 13 13 C 1.34811 * 116.99396 * 354.40487 * 12 11 10 14 14 H 1.08003 * 120.00270 * 5.06396 * 13 12 11 15 15 C 1.38656 * 119.99838 * 185.06372 * 13 12 11 16 16 N 1.31559 * 119.99853 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47254 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47223 * 119.99981 * 17 15 13 20 20 H 1.48504 * 109.46509 * 239.99711 * 17 15 13 21 21 C 1.39439 * 119.80065 * 0.02562 * 5 4 3 22 22 C 1.38012 * 119.98689 * 359.97438 * 21 5 4 23 23 C 1.38266 * 120.18459 * 359.97438 * 22 21 5 24 24 C 1.50689 * 119.89890 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.50266 * 8.62801 * 24 23 22 26 26 C 1.52997 * 60.00180 * 252.50905 * 25 24 23 27 27 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47297 * 299.99758 * 1 2 3 29 29 H 1.08998 * 109.47483 * 59.99891 * 1 2 3 30 30 H 1.07992 * 120.09100 * 0.25752 * 4 3 2 31 31 H 1.08002 * 120.02698 * 0.02562 * 7 6 5 32 32 H 1.08005 * 119.86554 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.83608 * 180.02562 * 9 8 7 34 34 H 1.08003 * 119.97369 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00008 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.00491 * 180.02562 * 21 5 4 37 37 H 1.07999 * 119.90435 * 180.02562 * 22 21 5 38 38 H 1.09006 * 115.55080 * 154.33207 * 24 23 22 39 39 H 1.09003 * 117.49801 * 359.97438 * 25 24 23 40 40 H 1.09001 * 117.50241 * 145.01638 * 25 24 23 41 41 H 1.08999 * 117.49303 * 252.50951 * 26 25 24 42 42 H 1.09000 * 117.50115 * 107.49109 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3727 -0.0005 5 6 1.9274 3.6118 0.0000 6 6 1.1257 4.8593 -0.0011 7 6 0.0971 5.0294 -0.9248 8 6 -0.6465 6.1919 -0.9216 9 6 -0.3744 7.1919 -0.0035 10 6 0.6436 7.0355 0.9166 11 6 1.3957 5.8695 0.9292 12 8 2.3918 5.7113 1.8365 13 6 2.6774 6.7688 2.6224 14 1 2.0698 7.6601 2.5702 15 6 3.7514 6.7121 3.4976 16 7 4.4912 5.6261 3.5615 17 14 4.1468 8.1771 4.5870 18 1 3.1709 9.2656 4.3262 19 1 4.0656 7.7700 6.0127 20 1 5.5186 8.6605 4.2875 21 6 3.3203 3.6757 0.0005 22 6 4.0641 2.5132 0.0011 23 6 3.4320 1.2834 0.0016 24 6 4.2505 0.0182 0.0016 25 6 5.7609 0.1537 0.2046 26 6 5.2036 -0.2067 -1.1739 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2127 2.3177 0.0032 31 1 -0.1188 4.2517 -1.6425 32 1 -1.4435 6.3226 -1.6387 33 1 -0.9610 8.0987 -0.0070 34 1 0.8507 7.8191 1.6305 35 1 5.2427 5.5866 4.1735 36 1 3.8170 4.6347 0.0014 37 1 5.1429 2.5642 0.0019 38 1 3.7617 -0.8579 0.4280 39 1 6.1626 1.1582 0.3377 40 1 6.2661 -0.6331 0.7647 41 1 5.3422 -1.2307 -1.5207 42 1 5.2387 0.5606 -1.9474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244890941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:46 Heat of formation + Delta-G solvation = 10.639647 kcal Electronic energy + Delta-G solvation = -25008.495653 eV Core-core repulsion = 21499.397649 eV Total energy + Delta-G solvation = -3509.098004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04414 -39.01935 -37.55545 -36.57996 -35.88011 -32.36193 -31.67448 -29.69019 -29.14525 -28.45573 -26.83301 -25.39593 -23.77069 -22.37437 -21.82078 -21.40938 -20.81204 -19.80686 -17.99769 -17.80446 -16.58218 -16.23300 -15.47988 -15.35649 -15.02490 -14.60660 -14.47627 -14.36345 -13.93502 -13.74758 -13.65937 -13.11132 -13.03026 -12.65706 -12.35347 -12.10656 -11.82405 -11.72770 -11.40045 -11.33878 -11.03794 -10.99787 -10.87811 -10.81625 -10.61557 -10.48821 -10.41824 -10.23436 -10.07090 -9.37519 -8.89149 -8.49307 -8.00028 -7.55665 -7.08178 -6.48190 -4.06757 1.53799 2.01702 2.28418 2.37066 3.09994 3.11549 3.16739 3.57491 3.92392 3.97833 4.39486 4.58566 4.80759 5.04991 5.09462 5.14794 5.18821 5.24804 5.30339 5.35163 5.40412 5.53999 5.59373 5.63473 5.74491 5.75329 5.87635 5.96844 6.00448 6.05263 6.10935 6.22841 6.27251 6.41811 6.49585 6.62995 6.68810 6.85668 6.99602 7.08425 7.15065 7.21341 7.31198 7.34030 7.42351 7.75745 7.80190 7.95272 8.96331 9.65075 10.68149 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.005059 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.790133 B = 5533.754109 C = 7425.907236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.200 4.200 5 C 0.024 3.976 6 C -0.137 4.137 7 C -0.060 4.060 8 C -0.216 4.216 9 C -0.069 4.069 10 C -0.234 4.234 11 C 0.166 3.834 12 O -0.162 6.162 13 C -0.396 4.396 14 H 0.092 0.908 15 C 0.043 3.957 16 N -0.852 5.852 17 Si 0.938 3.062 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.107 4.107 22 C -0.081 4.081 23 C -0.096 4.096 24 C -0.095 4.095 25 C -0.181 4.181 26 C -0.175 4.175 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.270 0.730 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 -7.507 -7.565 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.219 4.219 5 C 0.024 3.976 6 C -0.139 4.139 7 C -0.078 4.078 8 C -0.235 4.235 9 C -0.088 4.088 10 C -0.253 4.253 11 C 0.111 3.889 12 O -0.064 6.064 13 C -0.472 4.472 14 H 0.109 0.891 15 C -0.162 4.162 16 N -0.486 5.486 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.125 4.125 22 C -0.099 4.099 23 C -0.097 4.097 24 C -0.113 4.113 25 C -0.218 4.218 26 C -0.212 4.212 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.440 -7.977 -7.356 11.383 hybrid contribution -0.201 1.066 0.729 1.307 sum -3.641 -6.911 -6.627 10.244 Atomic orbital electron populations 1.22963 0.79229 1.03113 1.01358 1.86006 1.20633 1.27242 1.89373 1.18494 0.91291 0.83703 0.98739 1.21151 0.99351 0.91433 1.09982 1.18378 0.92712 0.91137 0.95361 1.17865 1.01368 0.94592 1.00063 1.20698 0.93573 0.96900 0.96623 1.20515 1.03824 0.95909 1.03281 1.20820 0.95958 0.97659 0.94325 1.21124 1.00439 0.99741 1.04012 1.19308 0.89047 0.92068 0.88521 1.84001 1.43956 1.37914 1.40514 1.21392 1.13990 0.93836 1.17972 0.89058 1.25265 0.95039 0.98378 0.97561 1.70060 1.16744 1.26394 1.35376 0.85684 0.78800 0.79861 0.79322 1.19129 1.20157 1.20116 1.21131 0.92889 0.98510 0.99976 1.20721 0.99623 0.90842 0.98671 1.18322 0.89695 0.93777 1.07915 1.20721 0.90556 0.97106 1.02901 1.23073 0.95992 1.03162 0.99545 1.22989 1.04215 1.02139 0.91841 0.88854 0.92807 0.92961 0.85895 0.87021 0.87497 0.87441 0.85352 0.92039 0.85501 0.85761 0.87191 0.88217 0.88860 0.89057 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.97 9.66 -19.46 -0.19 -5.16 16 3 C 0.12 2.17 6.65 -39.27 -0.26 1.91 16 4 C -0.20 -3.69 8.50 -39.08 -0.33 -4.02 16 5 C 0.02 0.50 5.27 -104.92 -0.55 -0.05 16 6 C -0.14 -2.92 5.49 -104.73 -0.57 -3.50 16 7 C -0.06 -1.08 9.51 -39.28 -0.37 -1.46 16 8 C -0.22 -3.70 10.03 -39.59 -0.40 -4.10 16 9 C -0.07 -1.26 10.03 -39.55 -0.40 -1.65 16 10 C -0.23 -5.01 9.16 -39.44 -0.36 -5.37 16 11 C 0.17 3.94 6.56 -38.74 -0.25 3.68 16 12 O -0.16 -4.43 8.13 0.36 0.00 -4.43 16 13 C -0.40 -10.73 9.49 30.89 0.29 -10.44 16 14 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 15 C 0.04 1.15 5.49 -17.51 -0.10 1.05 16 16 N -0.85 -24.18 13.67 55.48 0.76 -23.43 16 17 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 C -0.11 -2.26 8.79 -39.22 -0.34 -2.60 16 22 C -0.08 -1.51 9.28 -39.65 -0.37 -1.88 16 23 C -0.10 -1.71 5.63 -104.41 -0.59 -2.29 16 24 C -0.09 -1.41 5.74 -91.78 -0.53 -1.94 16 25 C -0.18 -2.37 9.86 -26.73 -0.26 -2.63 16 26 C -0.17 -2.18 10.16 -26.73 -0.27 -2.45 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 30 H 0.12 2.01 6.28 -52.49 -0.33 1.68 16 31 H 0.11 1.74 8.04 -52.49 -0.42 1.32 16 32 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.13 2.89 7.70 -52.49 -0.40 2.49 16 37 H 0.12 2.11 6.00 -52.49 -0.32 1.80 16 38 H 0.11 1.61 7.76 -51.93 -0.40 1.21 16 39 H 0.10 1.36 6.17 -51.93 -0.32 1.04 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -30.18 352.87 -9.04 -39.22 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.23 Total: 9.79 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: -4.68 Total: -36.42 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.76 Total: -23.43 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.19 Total: -9.58 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.18 -9.04 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244890941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.856 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds