Wall clock time and date at job start Tue Mar 31 2020 11:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35912 * 116.99627 * 2 1 4 4 C 1.38526 * 119.99320 * 359.97438 * 3 2 1 5 5 C 1.39295 * 119.81355 * 179.97438 * 4 3 2 6 6 C 1.48286 * 120.09830 * 179.97438 * 5 4 3 7 7 C 1.39289 * 120.16123 * 310.00665 * 6 5 4 8 8 C 1.38007 * 119.94678 * 179.97438 * 7 6 5 9 9 C 1.38451 * 120.27043 * 0.02562 * 8 7 6 10 10 C 1.38103 * 120.32332 * 0.02562 * 9 8 7 11 11 C 1.38759 * 120.04928 * 359.67893 * 10 9 8 12 12 O 1.35668 * 120.13949 * 180.32044 * 11 10 9 13 13 C 1.34811 * 116.99396 * 354.40487 * 12 11 10 14 14 H 1.08003 * 120.00270 * 5.06396 * 13 12 11 15 15 C 1.38656 * 119.99838 * 185.06372 * 13 12 11 16 16 N 1.31559 * 119.99853 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47254 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47223 * 119.99981 * 17 15 13 20 20 H 1.48504 * 109.46509 * 239.99711 * 17 15 13 21 21 C 1.39439 * 119.80065 * 0.02562 * 5 4 3 22 22 C 1.38012 * 119.98689 * 359.97438 * 21 5 4 23 23 C 1.38266 * 120.18459 * 359.97438 * 22 21 5 24 24 C 1.50689 * 119.89890 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.50266 * 8.62801 * 24 23 22 26 26 C 1.52997 * 60.00180 * 252.50905 * 25 24 23 27 27 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47297 * 299.99758 * 1 2 3 29 29 H 1.08998 * 109.47483 * 59.99891 * 1 2 3 30 30 H 1.07992 * 120.09100 * 0.25752 * 4 3 2 31 31 H 1.08002 * 120.02698 * 0.02562 * 7 6 5 32 32 H 1.08005 * 119.86554 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.83608 * 180.02562 * 9 8 7 34 34 H 1.08003 * 119.97369 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00008 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.00491 * 180.02562 * 21 5 4 37 37 H 1.07999 * 119.90435 * 180.02562 * 22 21 5 38 38 H 1.09006 * 115.55080 * 154.33207 * 24 23 22 39 39 H 1.09003 * 117.49801 * 359.97438 * 25 24 23 40 40 H 1.09001 * 117.50241 * 145.01638 * 25 24 23 41 41 H 1.08999 * 117.49303 * 252.50951 * 26 25 24 42 42 H 1.09000 * 117.50115 * 107.49109 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3727 -0.0005 5 6 1.9274 3.6118 0.0000 6 6 1.1257 4.8593 -0.0011 7 6 0.0971 5.0294 -0.9248 8 6 -0.6465 6.1919 -0.9216 9 6 -0.3744 7.1919 -0.0035 10 6 0.6436 7.0355 0.9166 11 6 1.3957 5.8695 0.9292 12 8 2.3918 5.7113 1.8365 13 6 2.6774 6.7688 2.6224 14 1 2.0698 7.6601 2.5702 15 6 3.7514 6.7121 3.4976 16 7 4.4912 5.6261 3.5615 17 14 4.1468 8.1771 4.5870 18 1 3.1709 9.2656 4.3262 19 1 4.0656 7.7700 6.0127 20 1 5.5186 8.6605 4.2875 21 6 3.3203 3.6757 0.0005 22 6 4.0641 2.5132 0.0011 23 6 3.4320 1.2834 0.0016 24 6 4.2505 0.0182 0.0016 25 6 5.7609 0.1537 0.2046 26 6 5.2036 -0.2067 -1.1739 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2127 2.3177 0.0032 31 1 -0.1188 4.2517 -1.6425 32 1 -1.4435 6.3226 -1.6387 33 1 -0.9610 8.0987 -0.0070 34 1 0.8507 7.8191 1.6305 35 1 5.2427 5.5866 4.1735 36 1 3.8170 4.6347 0.0014 37 1 5.1429 2.5642 0.0019 38 1 3.7617 -0.8579 0.4280 39 1 6.1626 1.1582 0.3377 40 1 6.2661 -0.6331 0.7647 41 1 5.3422 -1.2307 -1.5207 42 1 5.2387 0.5606 -1.9474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244890941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:46 Heat of formation + Delta-G solvation = -4.405640 kcal Electronic energy + Delta-G solvation = -25009.148066 eV Core-core repulsion = 21499.397649 eV Total energy + Delta-G solvation = -3509.750416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45019 -40.61206 -38.76398 -38.20392 -37.24390 -34.28611 -33.15266 -31.12282 -30.69886 -29.91425 -27.95890 -27.33021 -25.15349 -23.62502 -23.23963 -22.82579 -22.26905 -21.15112 -19.80095 -19.29062 -18.18867 -17.51373 -16.74815 -16.62571 -16.54847 -16.24322 -16.08682 -15.59808 -15.47258 -15.32425 -15.09735 -14.59467 -14.49764 -14.27918 -13.67607 -13.54316 -13.48490 -13.06284 -12.86441 -12.58635 -12.47894 -12.43904 -12.34614 -12.14935 -12.10642 -11.91222 -11.79908 -11.52115 -11.22580 -11.11660 -10.80484 -9.97809 -9.48395 -9.09202 -8.66535 -8.44119 -6.11219 0.03723 0.51835 0.70806 0.84656 1.34178 1.42040 1.51304 2.16577 2.40053 2.64024 2.87045 3.15158 3.22885 3.48966 3.59648 3.78197 3.96298 4.05094 4.16648 4.19629 4.24641 4.28456 4.34929 4.41406 4.49490 4.51857 4.56452 4.64489 4.71789 4.74788 4.81432 4.97662 5.01534 5.07533 5.13844 5.18565 5.21217 5.28312 5.38878 5.55631 5.62881 5.64504 5.74464 5.82437 5.85661 6.03851 6.22361 6.48611 6.99420 7.80515 8.77009 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.005059 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.790133 B = 5533.754109 C = 7425.907236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.322 6.322 3 C 0.123 3.877 4 C -0.199 4.199 5 C 0.002 3.998 6 C -0.147 4.147 7 C -0.060 4.060 8 C -0.191 4.191 9 C -0.067 4.067 10 C -0.249 4.249 11 C 0.125 3.875 12 O -0.209 6.209 13 C -0.416 4.416 14 H 0.099 0.901 15 C -0.016 4.016 16 N -0.908 5.908 17 Si 1.013 2.987 18 H -0.253 1.253 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.133 4.133 22 C -0.088 4.088 23 C -0.098 4.098 24 C -0.116 4.116 25 C -0.180 4.180 26 C -0.154 4.154 27 H 0.126 0.874 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.270 0.730 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 -8.333 -9.220 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.078 3.922 4 C -0.218 4.218 5 C 0.001 3.999 6 C -0.149 4.149 7 C -0.078 4.078 8 C -0.209 4.209 9 C -0.085 4.085 10 C -0.268 4.268 11 C 0.074 3.926 12 O -0.114 6.114 13 C -0.493 4.493 14 H 0.116 0.884 15 C -0.215 4.215 16 N -0.545 5.545 17 Si 0.833 3.167 18 H -0.176 1.176 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.151 4.151 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.134 4.134 25 C -0.217 4.217 26 C -0.191 4.191 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.786 -8.800 -9.054 13.888 hybrid contribution 0.256 1.200 0.989 1.576 sum -5.530 -7.600 -8.065 12.385 Atomic orbital electron populations 1.23324 0.76932 1.05566 1.01853 1.86014 1.22948 1.25760 1.88871 1.18608 0.91517 0.84413 0.97642 1.21303 1.00430 0.90648 1.09406 1.18515 0.92487 0.92161 0.96704 1.18267 1.02188 0.94317 1.00094 1.21131 0.92331 0.98346 0.95967 1.21106 1.03250 0.94227 1.02354 1.21254 0.94789 0.99451 0.93037 1.21272 1.01575 0.98860 1.05133 1.19908 0.89299 0.94055 0.89343 1.83989 1.46345 1.38546 1.42536 1.21834 1.14572 0.94417 1.18428 0.88401 1.26452 0.94610 1.01473 0.98953 1.70213 1.17987 1.29049 1.37233 0.84607 0.78830 0.76246 0.77034 1.17632 1.19583 1.19473 1.20982 0.93786 0.97838 1.02543 1.20822 1.00067 0.90851 0.98822 1.18646 0.90495 0.94380 1.06394 1.20763 0.91191 0.95853 1.05622 1.23148 0.94629 1.03314 1.00581 1.23067 1.01457 1.03518 0.91033 0.85549 0.93052 0.91638 0.83744 0.83839 0.82840 0.83630 0.86288 0.92064 0.89032 0.84993 0.86628 0.89429 0.86812 0.86390 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.32 -9.46 9.66 -92.56 -0.89 -10.35 16 3 C 0.12 4.33 6.65 22.47 0.15 4.48 16 4 C -0.20 -7.30 8.50 22.59 0.19 -7.11 16 5 C 0.00 0.07 5.27 -20.06 -0.11 -0.04 16 6 C -0.15 -6.40 5.49 -19.93 -0.11 -6.51 16 7 C -0.06 -2.03 9.51 22.47 0.21 -1.82 16 8 C -0.19 -5.75 10.03 22.27 0.22 -5.53 16 9 C -0.07 -2.26 10.03 22.29 0.22 -2.04 16 10 C -0.25 -10.84 9.16 22.36 0.20 -10.63 16 11 C 0.13 6.27 6.56 22.81 0.15 6.42 16 12 O -0.21 -12.37 8.13 -21.64 -0.18 -12.55 16 13 C -0.42 -24.10 9.49 67.92 0.64 -23.46 16 14 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 15 C -0.02 -0.91 5.49 84.83 0.47 -0.45 16 16 N -0.91 -55.26 13.67 21.61 0.30 -54.96 16 17 Si 1.01 43.07 29.55 68.60 2.03 45.10 16 18 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 C -0.13 -6.11 8.79 22.51 0.20 -5.91 16 22 C -0.09 -3.51 9.28 22.22 0.21 -3.30 16 23 C -0.10 -3.53 5.63 -19.73 -0.11 -3.64 16 24 C -0.12 -3.36 5.74 -11.54 -0.07 -3.43 16 25 C -0.18 -4.56 9.86 30.59 0.30 -4.25 16 26 C -0.15 -3.56 10.16 30.59 0.31 -3.25 16 27 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 29 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 30 H 0.14 4.49 6.28 -2.91 -0.02 4.47 16 31 H 0.14 3.93 8.04 -2.91 -0.02 3.91 16 32 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.09 4.73 7.70 -2.91 -0.02 4.71 16 37 H 0.13 4.86 6.00 -2.91 -0.02 4.84 16 38 H 0.12 3.21 7.76 -2.38 -0.02 3.19 16 39 H 0.09 2.43 6.17 -2.39 -0.01 2.42 16 40 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.27 352.87 6.50 -65.77 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 1.04 Total: 36.00 kcal Atomic # 6 Polarization: -73.21 SS G_CDS: 4.20 Total: -69.01 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.30 Total: -54.96 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.07 Total: -22.90 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.27 6.50 -65.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244890941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.361 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds