Wall clock time and date at job start Tue Mar 31 2020 09:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37963 * 120.07514 * 2 1 4 4 C 1.38342 * 120.14876 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.84991 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47167 * 89.99881 * 5 4 3 7 7 H 1.08003 * 120.00344 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00415 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99788 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00530 * 179.97438 * 8 6 5 11 11 H 1.48511 * 109.46962 * 89.99797 * 10 8 6 12 12 H 1.48502 * 109.47351 * 209.99609 * 10 8 6 13 13 H 1.48497 * 109.47322 * 330.00355 * 10 8 6 14 14 C 1.38396 * 120.30244 * 359.70035 * 4 3 2 15 15 C 1.37921 * 120.14995 * 0.55124 * 14 4 3 16 16 C 1.39608 * 120.07478 * 179.97438 * 2 1 3 17 17 C 1.47729 * 120.15119 * 0.02562 * 16 2 1 18 18 O 1.21470 * 120.00045 * 353.79334 * 17 16 2 19 19 O 1.34708 * 119.99980 * 173.79913 * 17 16 2 20 20 C 1.45201 * 117.00102 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47094 * 179.97438 * 20 19 17 22 22 C 1.38237 * 119.99591 * 269.72224 * 21 20 19 23 23 C 1.38241 * 119.99306 * 179.76576 * 22 21 20 24 24 C 1.38235 * 120.00146 * 0.51282 * 23 22 21 25 25 C 1.38228 * 120.00102 * 359.74335 * 24 23 22 26 26 C 1.38235 * 120.00001 * 90.00083 * 21 20 19 27 27 H 1.09002 * 109.47026 * 263.44145 * 1 2 3 28 28 H 1.09000 * 109.46770 * 23.44755 * 1 2 3 29 29 H 1.09007 * 109.46711 * 143.44526 * 1 2 3 30 30 H 1.08003 * 119.92695 * 359.97338 * 3 2 1 31 31 H 1.08996 * 109.47431 * 210.00138 * 5 4 3 32 32 H 1.09000 * 109.46962 * 330.00047 * 5 4 3 33 33 H 0.97004 * 120.00394 * 179.97438 * 9 8 6 34 34 H 1.07997 * 119.92043 * 180.28020 * 14 4 3 35 35 H 1.07993 * 120.07289 * 179.74893 * 15 14 4 36 36 H 1.09001 * 109.46639 * 299.99767 * 20 19 17 37 37 H 1.09002 * 109.46804 * 59.99540 * 20 19 17 38 38 H 1.07998 * 120.00287 * 0.02562 * 22 21 20 39 39 H 1.08003 * 119.99358 * 180.22887 * 23 22 21 40 40 H 1.08001 * 119.99703 * 179.72205 * 24 23 22 41 41 H 1.08002 * 120.00504 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.99870 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 -0.0005 5 6 4.3303 2.5037 -0.0011 6 6 4.5803 2.9400 1.4195 7 1 4.2317 2.3313 2.2407 8 6 5.2530 4.1169 1.6710 9 7 5.6771 4.8585 0.6710 10 14 5.5623 4.6582 3.4319 11 1 6.8598 4.1066 3.8986 12 1 5.6040 6.1413 3.4939 13 1 4.4693 4.1567 4.3031 14 6 4.2817 0.0017 0.0052 15 6 3.6031 -1.1990 0.0000 16 6 2.2067 -1.2081 0.0005 17 6 1.4731 -2.4904 0.0005 18 8 0.2637 -2.4982 0.1138 19 8 2.1454 -3.6510 -0.1249 20 6 1.3597 -4.8721 -0.1174 21 6 2.2754 -6.0595 -0.2677 22 6 2.5789 -6.5431 -1.5266 23 6 3.4228 -7.6293 -1.6647 24 6 3.9545 -8.2384 -0.5435 25 6 3.6467 -7.7581 0.7156 26 6 2.8071 -6.6686 0.8535 27 1 -0.3633 -0.1174 1.0210 28 1 -0.3633 0.9428 -0.4089 29 1 -0.3633 -0.8256 -0.6121 30 1 1.6585 2.1292 -0.0004 31 1 5.2829 2.3770 -0.5153 32 1 3.7380 3.2609 -0.5149 33 1 6.1502 5.6867 0.8479 34 1 5.3616 0.0103 0.0093 35 1 4.1505 -2.1300 0.0003 36 1 0.8165 -4.9486 0.8245 37 1 0.6508 -4.8531 -0.9452 38 1 2.1603 -6.0697 -2.4024 39 1 3.6629 -8.0048 -2.6485 40 1 4.6102 -9.0898 -0.6513 41 1 4.0617 -8.2342 1.5916 42 1 2.5666 -6.2932 1.8372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:10 Heat of formation + Delta-G solvation = -49.261276 kcal Electronic energy + Delta-G solvation = -23679.190577 eV Core-core repulsion = 20167.495074 eV Total energy + Delta-G solvation = -3511.695503 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57380 -39.47068 -38.51324 -36.40516 -33.74038 -32.53316 -32.15856 -31.31427 -31.22147 -27.89874 -26.96493 -26.32754 -23.96881 -22.90575 -21.98837 -21.69239 -21.29406 -19.71724 -17.68423 -17.37514 -16.51414 -16.47385 -16.38052 -15.41815 -15.17254 -14.86173 -14.83085 -14.13371 -14.02064 -13.76706 -13.54118 -13.26837 -13.09819 -12.76244 -12.64082 -12.47443 -12.39561 -12.02101 -11.75632 -11.41843 -11.39290 -11.32231 -11.21223 -10.80849 -10.69856 -10.67275 -10.38115 -10.06007 -9.61054 -9.53325 -9.23130 -9.15372 -8.49703 -8.29741 -8.05764 -6.12017 -4.16599 0.87970 1.09260 1.18861 1.88283 2.76048 2.88137 3.26745 3.33333 3.37601 3.58368 4.24354 4.38067 4.42875 4.49495 4.68134 4.80576 4.93090 4.93700 5.16654 5.20370 5.21069 5.25136 5.32420 5.32788 5.62836 5.63406 5.71858 5.89656 5.91669 6.00721 6.10577 6.14206 6.18600 6.21516 6.25375 6.31893 6.48689 6.63261 6.65942 6.79693 7.00521 7.01509 7.36696 7.50714 7.68492 7.83297 7.92449 8.20021 8.88277 9.47855 10.97941 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002630 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.433734 B =10644.259875 C =11421.549215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.012 3.988 5 C 0.041 3.959 6 C -0.514 4.514 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C -0.145 4.145 15 C -0.058 4.058 16 C -0.168 4.168 17 C 0.514 3.486 18 O -0.513 6.513 19 O -0.349 6.349 20 C 0.109 3.891 21 C -0.095 4.095 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.095 4.095 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 -23.041 -3.576 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.019 4.019 3 C -0.159 4.159 4 C 0.012 3.988 5 C 0.005 3.995 6 C -0.552 4.552 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.163 4.163 15 C -0.077 4.077 16 C -0.169 4.169 17 C 0.362 3.638 18 O -0.404 6.404 19 O -0.267 6.267 20 C 0.036 3.964 21 C -0.095 4.095 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.113 4.113 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.147 0.853 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.482 -22.913 -3.586 24.081 hybrid contribution 0.242 0.305 1.015 1.087 sum -6.239 -22.609 -2.571 23.595 Atomic orbital electron populations 1.21054 0.90730 1.02619 1.03055 1.19936 0.96142 0.91404 0.94375 1.20976 0.94194 0.96798 1.03946 1.21047 0.93618 0.97599 0.86510 1.18490 0.95223 0.87677 0.98133 1.20992 1.36797 1.06358 0.91100 0.92331 1.25004 0.95446 0.96363 0.97402 1.69953 1.38295 1.14078 1.30761 0.86506 0.78767 0.77746 0.84532 1.20505 1.21088 1.19742 1.21100 1.00475 0.91420 1.03343 1.21314 0.92482 0.98606 0.95256 1.18657 0.93556 0.88956 1.15753 1.21395 0.85909 0.84104 0.72377 1.90748 1.15133 1.87542 1.46983 1.86642 1.41576 1.14432 1.84026 1.21743 0.91776 0.79697 1.03226 1.19550 0.99949 0.96104 0.93901 1.21118 0.97300 0.96186 0.96699 1.21169 0.97710 0.96378 0.98930 1.21239 0.99307 0.99743 0.92693 1.21172 0.98438 0.96885 0.97671 1.21127 0.96229 0.95551 0.98376 0.91029 0.92255 0.89588 0.85345 0.94803 0.94834 0.92705 0.85470 0.85501 0.90350 0.90373 0.85734 0.85739 0.85895 0.85726 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.73 36.01 0.31 -1.49 16 2 C -0.02 -0.32 5.92 -104.21 -0.62 -0.94 16 3 C -0.14 -2.71 9.31 -39.64 -0.37 -3.08 16 4 C 0.01 0.26 5.08 -104.53 -0.53 -0.27 16 5 C 0.04 1.03 5.09 -29.04 -0.15 0.88 16 6 C -0.51 -13.98 9.09 -34.44 -0.31 -14.30 16 7 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 10 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 14 C -0.15 -2.72 9.68 -39.64 -0.38 -3.11 16 15 C -0.06 -0.98 9.62 -39.17 -0.38 -1.35 16 16 C -0.17 -2.88 5.87 -104.98 -0.62 -3.50 16 17 C 0.51 8.21 7.83 34.61 0.27 8.48 16 18 O -0.51 -8.61 13.14 -19.24 -0.25 -8.86 16 19 O -0.35 -4.92 9.48 -40.51 -0.38 -5.31 16 20 C 0.11 1.22 5.60 36.00 0.20 1.42 16 21 C -0.09 -0.97 5.52 -104.62 -0.58 -1.55 16 22 C -0.09 -0.87 9.70 -39.58 -0.38 -1.26 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 24 C -0.11 -0.86 10.05 -39.59 -0.40 -1.26 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 26 C -0.09 -0.89 9.70 -39.58 -0.38 -1.27 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16 29 H 0.09 1.33 5.86 -51.92 -0.30 1.03 16 30 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 31 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.13 1.85 7.63 -52.49 -0.40 1.45 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -30.23 363.54 -10.37 -40.60 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.72 Total: 0.78 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -5.20 Total: -23.82 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -24.99 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.64 Total: -14.17 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.23 -10.37 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.662 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds