Wall clock time and date at job start Tue Mar 31 2020 09:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37963 * 120.07514 * 2 1 4 4 C 1.38342 * 120.14876 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.84991 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47167 * 89.99881 * 5 4 3 7 7 H 1.08003 * 120.00344 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00415 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99788 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00530 * 179.97438 * 8 6 5 11 11 H 1.48511 * 109.46962 * 89.99797 * 10 8 6 12 12 H 1.48502 * 109.47351 * 209.99609 * 10 8 6 13 13 H 1.48497 * 109.47322 * 330.00355 * 10 8 6 14 14 C 1.38396 * 120.30244 * 359.70035 * 4 3 2 15 15 C 1.37921 * 120.14995 * 0.55124 * 14 4 3 16 16 C 1.39608 * 120.07478 * 179.97438 * 2 1 3 17 17 C 1.47729 * 120.15119 * 0.02562 * 16 2 1 18 18 O 1.21470 * 120.00045 * 353.79334 * 17 16 2 19 19 O 1.34708 * 119.99980 * 173.79913 * 17 16 2 20 20 C 1.45201 * 117.00102 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47094 * 179.97438 * 20 19 17 22 22 C 1.38237 * 119.99591 * 269.72224 * 21 20 19 23 23 C 1.38241 * 119.99306 * 179.76576 * 22 21 20 24 24 C 1.38235 * 120.00146 * 0.51282 * 23 22 21 25 25 C 1.38228 * 120.00102 * 359.74335 * 24 23 22 26 26 C 1.38235 * 120.00001 * 90.00083 * 21 20 19 27 27 H 1.09002 * 109.47026 * 263.44145 * 1 2 3 28 28 H 1.09000 * 109.46770 * 23.44755 * 1 2 3 29 29 H 1.09007 * 109.46711 * 143.44526 * 1 2 3 30 30 H 1.08003 * 119.92695 * 359.97338 * 3 2 1 31 31 H 1.08996 * 109.47431 * 210.00138 * 5 4 3 32 32 H 1.09000 * 109.46962 * 330.00047 * 5 4 3 33 33 H 0.97004 * 120.00394 * 179.97438 * 9 8 6 34 34 H 1.07997 * 119.92043 * 180.28020 * 14 4 3 35 35 H 1.07993 * 120.07289 * 179.74893 * 15 14 4 36 36 H 1.09001 * 109.46639 * 299.99767 * 20 19 17 37 37 H 1.09002 * 109.46804 * 59.99540 * 20 19 17 38 38 H 1.07998 * 120.00287 * 0.02562 * 22 21 20 39 39 H 1.08003 * 119.99358 * 180.22887 * 23 22 21 40 40 H 1.08001 * 119.99703 * 179.72205 * 24 23 22 41 41 H 1.08002 * 120.00504 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.99870 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1957 -0.0005 5 6 4.3303 2.5037 -0.0011 6 6 4.5803 2.9400 1.4195 7 1 4.2317 2.3313 2.2407 8 6 5.2530 4.1169 1.6710 9 7 5.6771 4.8585 0.6710 10 14 5.5623 4.6582 3.4319 11 1 6.8598 4.1066 3.8986 12 1 5.6040 6.1413 3.4939 13 1 4.4693 4.1567 4.3031 14 6 4.2817 0.0017 0.0052 15 6 3.6031 -1.1990 0.0000 16 6 2.2067 -1.2081 0.0005 17 6 1.4731 -2.4904 0.0005 18 8 0.2637 -2.4982 0.1138 19 8 2.1454 -3.6510 -0.1249 20 6 1.3597 -4.8721 -0.1174 21 6 2.2754 -6.0595 -0.2677 22 6 2.5789 -6.5431 -1.5266 23 6 3.4228 -7.6293 -1.6647 24 6 3.9545 -8.2384 -0.5435 25 6 3.6467 -7.7581 0.7156 26 6 2.8071 -6.6686 0.8535 27 1 -0.3633 -0.1174 1.0210 28 1 -0.3633 0.9428 -0.4089 29 1 -0.3633 -0.8256 -0.6121 30 1 1.6585 2.1292 -0.0004 31 1 5.2829 2.3770 -0.5153 32 1 3.7380 3.2609 -0.5149 33 1 6.1502 5.6867 0.8479 34 1 5.3616 0.0103 0.0093 35 1 4.1505 -2.1300 0.0003 36 1 0.8165 -4.9486 0.8245 37 1 0.6508 -4.8531 -0.9452 38 1 2.1603 -6.0697 -2.4024 39 1 3.6629 -8.0048 -2.6485 40 1 4.6102 -9.0898 -0.6513 41 1 4.0617 -8.2342 1.5916 42 1 2.5666 -6.2932 1.8372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:09 Heat of formation + Delta-G solvation = -61.343008 kcal Electronic energy + Delta-G solvation = -23679.714480 eV Core-core repulsion = 20167.495074 eV Total energy + Delta-G solvation = -3512.219406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78071 -40.32470 -39.74773 -37.57813 -35.61410 -33.78685 -33.42358 -32.71273 -31.83486 -29.58285 -28.25572 -27.35998 -25.74525 -23.52715 -23.38725 -22.98679 -22.17250 -21.18819 -18.94280 -18.52357 -18.25939 -17.53010 -17.41796 -16.73546 -16.30641 -16.13692 -15.95006 -15.65397 -15.19880 -14.82774 -14.45840 -14.32983 -14.25742 -14.06440 -13.95256 -13.77784 -13.50200 -13.46867 -13.27851 -13.02802 -12.77942 -12.58483 -12.47813 -12.08808 -12.05420 -11.90775 -11.71549 -11.66013 -11.55851 -11.06846 -10.61338 -9.85851 -9.83408 -9.75053 -9.60243 -8.22442 -6.35006 -0.22294 0.18927 0.44421 0.46678 1.40562 1.41185 1.51360 1.55342 1.71775 2.39227 2.84171 2.88783 3.09840 3.55534 3.79417 3.80486 3.87465 3.93675 4.11071 4.15710 4.22938 4.26013 4.32030 4.45666 4.50293 4.59494 4.70413 4.77721 4.79960 4.84542 4.96081 5.00368 5.11702 5.11928 5.28157 5.31272 5.33207 5.38784 5.51290 5.58091 5.58840 5.58939 5.72280 5.92760 5.95091 6.04951 6.14827 6.69808 6.77023 7.33703 8.87436 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002630 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.433734 B =10644.259875 C =11421.549215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.019 4.019 3 C -0.148 4.148 4 C -0.013 4.013 5 C 0.051 3.949 6 C -0.529 4.529 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.267 1.267 14 C -0.151 4.151 15 C -0.046 4.046 16 C -0.169 4.169 17 C 0.520 3.480 18 O -0.522 6.522 19 O -0.350 6.350 20 C 0.108 3.892 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.108 4.108 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.266 0.734 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -25.339 -2.838 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.020 4.020 3 C -0.166 4.166 4 C -0.013 4.013 5 C 0.014 3.986 6 C -0.567 4.567 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.192 1.192 14 C -0.168 4.168 15 C -0.064 4.064 16 C -0.170 4.170 17 C 0.367 3.633 18 O -0.413 6.413 19 O -0.268 6.268 20 C 0.035 3.965 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.131 4.131 25 C -0.148 4.148 26 C -0.126 4.126 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.641 -25.233 -2.851 26.248 hybrid contribution 0.270 0.850 0.728 1.152 sum -6.370 -24.383 -2.123 25.291 Atomic orbital electron populations 1.21052 0.88963 1.03517 1.03387 1.20144 0.97402 0.90896 0.93537 1.20972 0.93577 0.97675 1.04335 1.20757 0.94330 0.96543 0.89700 1.18224 0.94345 0.89374 0.96689 1.21306 1.36659 1.06564 0.92169 0.92662 1.25873 0.95158 0.96430 1.01630 1.70066 1.39094 1.14577 1.32961 0.85465 0.78889 0.77419 0.79416 1.19639 1.20523 1.19153 1.21139 1.00777 0.91410 1.03523 1.21483 0.92467 0.98704 0.93712 1.18918 0.93918 0.89732 1.14457 1.21090 0.85582 0.84323 0.72265 1.90745 1.15435 1.87817 1.47332 1.86621 1.41970 1.14717 1.83446 1.21954 0.92050 0.78767 1.03746 1.19573 1.00919 0.96160 0.94737 1.21323 0.97746 0.96826 0.96637 1.21484 0.97118 0.95903 1.00228 1.21610 0.99018 1.00119 0.92353 1.21476 0.97990 0.96505 0.98819 1.21319 0.96670 0.96191 0.98460 0.90608 0.90749 0.89524 0.85393 0.96859 0.97078 0.92478 0.85095 0.82950 0.89936 0.89760 0.85066 0.83676 0.83472 0.83775 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 8.73 71.24 0.62 -2.66 16 2 C -0.02 -0.67 5.92 -19.60 -0.12 -0.78 16 3 C -0.15 -5.72 9.31 22.23 0.21 -5.51 16 4 C -0.01 -0.56 5.08 -19.80 -0.10 -0.66 16 5 C 0.05 2.61 5.09 29.10 0.15 2.76 16 6 C -0.53 -29.43 9.09 25.60 0.23 -29.20 16 7 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 10 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 C -0.15 -5.63 9.68 22.23 0.22 -5.41 16 15 C -0.05 -1.47 9.62 22.54 0.22 -1.25 16 16 C -0.17 -5.57 5.87 -20.10 -0.12 -5.69 16 17 C 0.52 15.71 7.83 70.33 0.55 16.26 16 18 O -0.52 -16.63 13.14 19.93 0.26 -16.36 16 19 O -0.35 -9.27 9.48 -56.17 -0.53 -9.81 16 20 C 0.11 2.26 5.60 71.24 0.40 2.66 16 21 C -0.11 -2.16 5.52 -19.87 -0.11 -2.27 16 22 C -0.11 -1.80 9.70 22.27 0.22 -1.59 16 23 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 24 C -0.11 -1.44 10.05 22.27 0.22 -1.21 16 25 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 26 C -0.11 -1.86 9.70 22.27 0.22 -1.64 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 28 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 29 H 0.09 2.53 5.86 -2.38 -0.01 2.52 16 30 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 31 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.15 4.09 7.63 -2.91 -0.02 4.07 16 36 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 37 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 38 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -64.81 363.54 6.77 -58.04 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.01 Total: 15.38 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.71 Total: -38.47 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.28 Total: -54.36 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.27 Total: -26.17 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.81 6.77 -58.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.300 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds