Wall clock time and date at job start Tue Mar 31 2020 10:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 H 1.09007 * 109.47357 * 54.99272 * 3 2 1 5 5 C 1.50701 * 109.47420 * 174.99384 * 3 2 1 6 6 H 1.08004 * 119.99872 * 119.99044 * 5 3 2 7 7 C 1.37876 * 119.99989 * 300.00320 * 5 3 2 8 8 N 1.31515 * 119.99952 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99934 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47329 * 90.00473 * 9 7 5 11 11 H 1.48508 * 109.47219 * 210.00292 * 9 7 5 12 12 H 1.48499 * 109.47244 * 330.00224 * 9 7 5 13 13 N 1.46903 * 109.46989 * 294.99405 * 3 2 1 14 14 C 1.46955 * 110.99947 * 179.97438 * 13 3 2 15 15 C 1.53052 * 109.36293 * 183.18836 * 14 13 3 16 16 N 1.46957 * 109.36543 * 301.59739 * 15 14 13 17 17 C 1.39111 * 111.00035 * 183.18616 * 16 15 14 18 18 C 1.39499 * 120.14283 * 180.02562 * 17 16 15 19 19 C 1.38526 * 117.91420 * 179.97438 * 18 17 16 20 20 C 1.38956 * 118.02350 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.00653 * 180.02562 * 20 19 18 22 22 N 1.31865 * 119.98647 * 0.02562 * 20 19 18 23 23 N 1.28354 * 122.26805 * 359.97438 * 22 20 19 24 24 C 1.46962 * 110.87844 * 59.32469 * 16 15 14 25 25 C 1.46957 * 111.00044 * 303.80156 * 13 3 2 26 26 H 1.09002 * 109.46967 * 60.00782 * 1 2 3 27 27 H 1.09008 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47752 * 300.00688 * 1 2 3 29 29 H 1.08994 * 109.47752 * 239.99312 * 2 1 3 30 30 H 1.09001 * 109.46506 * 119.99483 * 2 1 3 31 31 H 0.97004 * 119.99758 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.48897 * 63.22714 * 14 13 3 33 33 H 1.09003 * 109.51109 * 303.16808 * 14 13 3 34 34 H 1.08999 * 109.48845 * 181.63562 * 15 14 13 35 35 H 1.08995 * 109.50733 * 61.58191 * 15 14 13 36 36 H 1.08004 * 121.04118 * 359.96151 * 18 17 16 37 37 H 1.07996 * 120.98684 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.48861 * 60.63938 * 24 16 15 39 39 H 1.08995 * 109.48686 * 180.71300 * 24 16 15 40 40 H 1.09002 * 109.48374 * 296.77665 * 25 13 3 41 41 H 1.08999 * 109.48704 * 56.82329 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5419 1.4444 0.1240 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2282 8 7 5.4539 0.8798 1.3361 9 14 3.0961 0.1101 2.5708 10 1 2.8744 -1.3260 2.2647 11 1 3.7938 0.2361 3.8757 12 1 1.7879 0.8094 2.6394 13 7 1.6514 2.0992 -1.2553 14 6 2.1249 3.4899 -1.2906 15 6 1.6330 4.1610 -2.5752 16 7 2.1273 3.4098 -3.7375 17 6 1.7593 4.0316 -4.9263 18 6 2.1307 3.4769 -6.1512 19 6 1.7392 4.1341 -7.3060 20 6 1.0010 5.3038 -7.1732 21 17 0.4830 6.1687 -8.5865 22 7 0.6941 5.7568 -5.9735 23 7 1.0540 5.1522 -4.9000 24 6 1.6537 2.0190 -3.7022 25 6 2.1451 1.3476 -2.4176 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 1.8934 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 5.8769 0.4820 2.1132 32 1 3.2147 3.5038 -1.2674 33 1 1.7359 4.0290 -0.4268 34 1 2.0073 5.1838 -2.6175 35 1 0.5432 4.1719 -2.5859 36 1 2.7056 2.5637 -6.1976 37 1 1.9993 3.7483 -8.2807 38 1 0.5641 2.0052 -3.7254 39 1 2.0431 1.4802 -4.5660 40 1 3.2351 1.3368 -2.4073 41 1 1.7708 0.3248 -2.3750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:54 Heat of formation + Delta-G solvation = 82.840985 kcal Electronic energy + Delta-G solvation = -23808.996371 eV Core-core repulsion = 20365.181905 eV Total energy + Delta-G solvation = -3443.814466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44134 -39.12946 -37.14179 -36.41577 -33.56154 -33.01215 -31.99507 -30.91473 -30.41502 -27.73440 -25.68763 -25.21560 -23.34286 -23.06307 -22.31971 -20.35201 -19.21469 -18.02976 -17.61033 -17.10269 -16.72498 -15.64784 -15.45508 -14.73986 -14.55947 -14.33323 -14.24349 -13.99064 -13.67573 -13.41326 -12.84550 -12.59101 -12.36327 -12.20318 -11.92970 -11.83810 -11.65135 -11.55714 -11.27933 -10.99772 -10.89737 -10.75637 -10.66174 -10.31505 -10.22026 -10.10106 -9.81914 -9.67012 -9.63871 -9.30289 -8.62742 -8.41460 -7.30577 -6.17556 -4.19070 0.49533 0.57947 1.42302 3.09211 3.20489 3.32849 3.34156 3.41739 4.04447 4.25635 4.31673 4.42253 4.55882 4.71166 4.96217 5.12053 5.24457 5.27740 5.37212 5.51364 5.58233 5.62258 5.79781 5.88843 5.92131 5.94364 6.07383 6.12558 6.35708 6.53984 6.59436 6.62530 6.70293 6.74592 6.82614 6.91966 7.00520 7.15587 7.46482 7.95002 7.97882 8.37212 8.42002 8.84437 9.45347 10.95000 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.003006 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.381711 B = 9313.529157 C = 9532.641008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.182 3.818 4 H 0.042 0.958 5 C -0.547 4.547 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.263 1.263 13 N -0.528 5.528 14 C 0.059 3.941 15 C 0.066 3.934 16 N -0.462 5.462 17 C 0.268 3.732 18 C -0.121 4.121 19 C -0.085 4.085 20 C 0.078 3.922 21 Cl -0.018 7.018 22 N -0.206 5.206 23 N -0.264 5.264 24 C 0.063 3.937 25 C 0.055 3.945 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 3.237 -16.382 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.075 3.925 4 H 0.059 0.941 5 C -0.585 4.585 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.188 1.188 13 N -0.252 5.252 14 C -0.070 4.070 15 C -0.061 4.061 16 N -0.180 5.180 17 C 0.029 3.971 18 C -0.153 4.153 19 C -0.114 4.114 20 C -0.096 4.096 21 Cl 0.010 6.990 22 N -0.050 5.050 23 N -0.113 5.113 24 C -0.063 4.063 25 C -0.074 4.074 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.340 4.367 -15.375 18.512 hybrid contribution 0.631 -1.480 -0.195 1.621 sum -8.709 2.886 -15.570 18.072 Atomic orbital electron populations 1.21748 0.97307 0.99426 1.01707 1.22004 0.94069 0.99358 1.00860 1.19714 0.94708 0.90373 0.87726 0.94072 1.21596 0.90471 1.39201 1.07264 0.90414 1.24975 0.94701 0.95283 0.97823 1.69914 1.08853 1.44854 1.29698 0.86873 0.80749 0.79779 0.80958 1.20564 1.22584 1.18823 1.62611 1.57979 1.01511 1.03117 1.22051 1.00062 0.89970 0.94883 1.22304 0.99091 0.96980 0.87712 1.59199 1.54074 1.04549 1.00148 1.21792 0.89785 0.93117 0.92366 1.22063 1.00521 1.02253 0.90443 1.22073 0.95428 0.92987 1.00916 1.23268 1.00875 0.94362 0.91132 1.98404 1.89689 1.76636 1.34308 1.72691 1.14182 1.23935 0.94182 1.73409 1.10482 1.08934 1.18434 1.22518 0.98761 0.84586 1.00428 1.22103 0.99954 0.97199 0.88100 0.92131 0.94722 0.93776 0.92138 0.93332 0.92609 0.92368 0.90379 0.89643 0.92369 0.82114 0.82329 0.92862 0.90126 0.92337 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.80 37.16 0.36 -2.08 16 2 C -0.13 -2.51 4.59 -26.73 -0.12 -2.63 16 3 C 0.18 3.94 1.41 -68.86 -0.10 3.85 16 4 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 5 C -0.55 -14.11 7.70 -34.44 -0.27 -14.37 16 6 H 0.08 2.21 6.05 -52.48 -0.32 1.89 16 7 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 9 Si 0.89 21.07 24.41 -169.99 -4.15 16.93 16 10 H -0.28 -6.48 6.83 56.52 0.39 -6.09 16 11 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.00 6.53 56.52 0.37 -5.63 16 13 N -0.53 -9.76 4.19 -227.87 -0.95 -10.71 16 14 C 0.06 1.06 5.25 -3.77 -0.02 1.04 16 15 C 0.07 1.02 4.80 -3.77 -0.02 1.00 16 16 N -0.46 -6.72 4.74 -172.87 -0.82 -7.54 16 17 C 0.27 3.62 6.48 -154.74 -1.00 2.62 16 18 C -0.12 -1.24 9.32 -39.01 -0.36 -1.60 16 19 C -0.08 -0.77 9.99 -39.21 -0.39 -1.16 16 20 C 0.08 0.90 7.36 -17.27 -0.13 0.77 16 21 Cl -0.02 -0.17 29.13 -51.86 -1.51 -1.69 16 22 N -0.21 -2.96 11.48 32.90 0.38 -2.59 16 23 N -0.26 -3.97 9.90 31.24 0.31 -3.66 16 24 C 0.06 0.84 5.37 -3.76 -0.02 0.82 16 25 C 0.06 0.92 4.93 -3.77 -0.02 0.90 16 26 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 27 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.17 6.00 -51.93 -0.31 0.86 16 30 H 0.05 1.06 3.22 -51.93 -0.17 0.89 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 1.20 6.58 -51.92 -0.34 0.86 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.32 7.84 -51.93 -0.41 0.91 16 35 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.16 1.25 7.25 -52.48 -0.38 0.87 16 37 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.86 6.85 -51.93 -0.36 0.50 16 40 H 0.06 1.14 6.81 -51.93 -0.35 0.78 16 41 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -29.31 329.23 -8.63 -37.94 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.44 Total: 0.82 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.18 Total: -8.90 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.31 Total: -50.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.15 Total: 16.93 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.31 -8.63 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.780 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds