Wall clock time and date at job start Tue Mar 31 2020 10:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 H 1.09007 * 109.47357 * 54.99272 * 3 2 1 5 5 C 1.50701 * 109.47420 * 174.99384 * 3 2 1 6 6 H 1.08004 * 119.99872 * 119.99044 * 5 3 2 7 7 C 1.37876 * 119.99989 * 300.00320 * 5 3 2 8 8 N 1.31515 * 119.99952 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99934 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47329 * 90.00473 * 9 7 5 11 11 H 1.48508 * 109.47219 * 210.00292 * 9 7 5 12 12 H 1.48499 * 109.47244 * 330.00224 * 9 7 5 13 13 N 1.46903 * 109.46989 * 294.99405 * 3 2 1 14 14 C 1.46955 * 110.99947 * 179.97438 * 13 3 2 15 15 C 1.53052 * 109.36293 * 183.18836 * 14 13 3 16 16 N 1.46957 * 109.36543 * 301.59739 * 15 14 13 17 17 C 1.39111 * 111.00035 * 183.18616 * 16 15 14 18 18 C 1.39499 * 120.14283 * 180.02562 * 17 16 15 19 19 C 1.38526 * 117.91420 * 179.97438 * 18 17 16 20 20 C 1.38956 * 118.02350 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.00653 * 180.02562 * 20 19 18 22 22 N 1.31865 * 119.98647 * 0.02562 * 20 19 18 23 23 N 1.28354 * 122.26805 * 359.97438 * 22 20 19 24 24 C 1.46962 * 110.87844 * 59.32469 * 16 15 14 25 25 C 1.46957 * 111.00044 * 303.80156 * 13 3 2 26 26 H 1.09002 * 109.46967 * 60.00782 * 1 2 3 27 27 H 1.09008 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47752 * 300.00688 * 1 2 3 29 29 H 1.08994 * 109.47752 * 239.99312 * 2 1 3 30 30 H 1.09001 * 109.46506 * 119.99483 * 2 1 3 31 31 H 0.97004 * 119.99758 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.48897 * 63.22714 * 14 13 3 33 33 H 1.09003 * 109.51109 * 303.16808 * 14 13 3 34 34 H 1.08999 * 109.48845 * 181.63562 * 15 14 13 35 35 H 1.08995 * 109.50733 * 61.58191 * 15 14 13 36 36 H 1.08004 * 121.04118 * 359.96151 * 18 17 16 37 37 H 1.07996 * 120.98684 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.48861 * 60.63938 * 24 16 15 39 39 H 1.08995 * 109.48686 * 180.71300 * 24 16 15 40 40 H 1.09002 * 109.48374 * 296.77665 * 25 13 3 41 41 H 1.08999 * 109.48704 * 56.82329 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5419 1.4444 0.1240 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2282 8 7 5.4539 0.8798 1.3361 9 14 3.0961 0.1101 2.5708 10 1 2.8744 -1.3260 2.2647 11 1 3.7938 0.2361 3.8757 12 1 1.7879 0.8094 2.6394 13 7 1.6514 2.0992 -1.2553 14 6 2.1249 3.4899 -1.2906 15 6 1.6330 4.1610 -2.5752 16 7 2.1273 3.4098 -3.7375 17 6 1.7593 4.0316 -4.9263 18 6 2.1307 3.4769 -6.1512 19 6 1.7392 4.1341 -7.3060 20 6 1.0010 5.3038 -7.1732 21 17 0.4830 6.1687 -8.5865 22 7 0.6941 5.7568 -5.9735 23 7 1.0540 5.1522 -4.9000 24 6 1.6537 2.0190 -3.7022 25 6 2.1451 1.3476 -2.4176 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 1.8934 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 5.8769 0.4820 2.1132 32 1 3.2147 3.5038 -1.2674 33 1 1.7359 4.0290 -0.4268 34 1 2.0073 5.1838 -2.6175 35 1 0.5432 4.1719 -2.5859 36 1 2.7056 2.5637 -6.1976 37 1 1.9993 3.7483 -8.2807 38 1 0.5641 2.0052 -3.7254 39 1 2.0431 1.4802 -4.5660 40 1 3.2351 1.3368 -2.4073 41 1 1.7708 0.3248 -2.3750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:53 Heat of formation + Delta-G solvation = 62.189886 kcal Electronic energy + Delta-G solvation = -23809.891870 eV Core-core repulsion = 20365.181905 eV Total energy + Delta-G solvation = -3444.709965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40332 -40.43159 -38.16329 -37.62037 -34.77609 -34.29877 -33.75092 -32.12380 -31.63036 -29.34278 -27.14194 -26.21992 -24.60258 -24.32928 -23.73071 -21.80429 -20.81636 -19.09150 -18.62780 -18.51809 -18.02281 -17.13126 -16.66344 -16.09656 -15.89890 -15.68488 -15.48596 -15.13198 -14.96940 -14.58329 -14.49225 -14.04927 -13.67976 -13.64815 -13.26763 -13.07018 -12.84258 -12.70378 -12.56970 -12.50278 -12.29059 -12.21413 -11.96272 -11.76686 -11.56750 -11.41010 -11.31616 -11.11640 -11.11066 -10.69242 -10.66011 -9.48011 -8.95747 -8.29918 -6.33890 -0.32321 -0.31456 0.58478 1.30376 1.37212 1.46510 2.13702 2.31565 2.42946 3.05758 3.13465 3.21592 3.40129 3.63280 3.75422 3.89580 4.08742 4.21425 4.30816 4.36033 4.40036 4.45471 4.49451 4.58175 4.64893 4.66550 4.81830 4.83082 4.95027 5.05625 5.12916 5.17714 5.19232 5.26772 5.45717 5.52360 5.61006 5.63191 5.80872 6.15792 6.36000 6.42435 6.74679 7.34272 7.48276 8.86305 Molecular weight = 310.13amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.003006 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.381711 B = 9313.529157 C = 9532.641008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.186 3.814 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.038 0.962 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.306 1.306 12 H -0.246 1.246 13 N -0.518 5.518 14 C 0.064 3.936 15 C 0.082 3.918 16 N -0.475 5.475 17 C 0.253 3.747 18 C -0.113 4.113 19 C -0.069 4.069 20 C 0.076 3.924 21 Cl -0.003 7.003 22 N -0.242 5.242 23 N -0.296 5.296 24 C 0.071 3.929 25 C 0.057 3.943 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.191 0.809 37 H 0.202 0.798 38 H 0.061 0.939 39 H 0.116 0.884 40 H 0.023 0.977 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 1.994 -18.579 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.077 3.923 4 H 0.048 0.952 5 C -0.573 4.573 6 H 0.056 0.944 7 C -0.181 4.181 8 N -0.588 5.588 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.234 1.234 12 H -0.170 1.170 13 N -0.242 5.242 14 C -0.065 4.065 15 C -0.045 4.045 16 N -0.193 5.193 17 C 0.014 3.986 18 C -0.144 4.144 19 C -0.097 4.097 20 C -0.099 4.099 21 Cl 0.025 6.975 22 N -0.085 5.085 23 N -0.143 5.143 24 C -0.054 4.054 25 C -0.071 4.071 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.208 0.792 37 H 0.219 0.781 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.041 0.959 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.493 3.143 -17.603 21.256 hybrid contribution 1.330 -0.990 0.292 1.683 sum -10.163 2.153 -17.311 20.189 Atomic orbital electron populations 1.21661 0.94308 1.01193 1.02111 1.21917 0.96666 0.97227 1.00408 1.19587 0.91553 0.92100 0.89039 0.95247 1.21853 0.92729 1.37120 1.05624 0.94393 1.25785 0.95622 0.96273 1.00393 1.70068 1.10882 1.47111 1.30741 0.85906 0.79611 0.79687 0.77506 1.19146 1.23417 1.17000 1.62631 1.57329 1.01573 1.02666 1.21974 0.97690 0.90213 0.96618 1.21994 0.98805 0.96575 0.87087 1.59219 1.54851 1.04926 1.00287 1.21878 0.90649 0.93278 0.92833 1.22392 0.99808 1.02962 0.89248 1.22513 0.93394 0.91406 1.02414 1.23612 1.00404 0.95045 0.90880 1.98413 1.89552 1.76527 1.33026 1.72588 1.15719 1.25078 0.95102 1.73285 1.11778 1.09883 1.19401 1.22494 0.99185 0.84162 0.99596 1.22127 0.97857 0.98149 0.89002 0.91202 0.92272 0.93932 0.91600 0.94813 0.92772 0.96087 0.90644 0.90069 0.92254 0.79163 0.78096 0.92098 0.86599 0.95854 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.80 71.98 0.71 -3.43 16 2 C -0.12 -4.77 4.59 30.59 0.14 -4.63 16 3 C 0.19 8.04 1.41 44.17 0.06 8.10 16 4 H 0.03 1.36 7.20 -2.38 -0.02 1.34 16 5 C -0.53 -28.63 7.70 25.60 0.20 -28.43 16 6 H 0.04 2.30 6.05 -2.91 -0.02 2.28 16 7 C 0.02 0.96 5.45 84.65 0.46 1.42 16 8 N -0.95 -58.07 13.96 21.45 0.30 -57.77 16 9 Si 0.95 43.83 24.41 68.60 1.67 45.51 16 10 H -0.27 -11.66 6.83 99.48 0.68 -10.98 16 11 H -0.31 -14.46 7.11 99.48 0.71 -13.76 16 12 H -0.25 -10.61 6.53 99.48 0.65 -9.96 16 13 N -0.52 -19.13 4.19 -874.84 -3.67 -22.80 16 14 C 0.06 2.38 5.25 86.31 0.45 2.84 16 15 C 0.08 2.58 4.80 86.31 0.41 3.00 16 16 N -0.47 -13.39 4.74 -700.85 -3.32 -16.72 16 17 C 0.25 6.41 6.48 133.10 0.86 7.27 16 18 C -0.11 -1.92 9.32 22.64 0.21 -1.71 16 19 C -0.07 -0.98 9.99 22.51 0.22 -0.76 16 20 C 0.08 1.57 7.36 84.86 0.62 2.19 16 21 Cl 0.00 -0.05 29.13 -2.72 -0.08 -0.13 16 22 N -0.24 -6.72 11.48 -49.84 -0.57 -7.30 16 23 N -0.30 -8.71 9.90 -55.07 -0.55 -9.25 16 24 C 0.07 1.74 5.37 86.31 0.46 2.21 16 25 C 0.06 1.86 4.93 86.31 0.43 2.29 16 26 H 0.07 2.00 7.75 -2.39 -0.02 1.98 16 27 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 2.43 6.00 -2.39 -0.01 2.41 16 30 H 0.03 1.40 3.22 -2.39 -0.01 1.39 16 31 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.02 0.93 6.58 -2.38 -0.02 0.92 16 33 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.08 2.59 7.84 -2.39 -0.02 2.57 16 35 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 36 H 0.19 2.04 7.25 -2.91 -0.02 2.02 16 37 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 2.04 6.85 -2.39 -0.02 2.02 16 40 H 0.02 0.93 6.81 -2.39 -0.02 0.91 16 41 H 0.10 2.89 5.95 -2.39 -0.01 2.87 16 Total: -1.00 -67.68 329.23 0.00 -67.68 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.97 Total: 10.43 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.25 Total: -9.65 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -7.81 Total: -113.83 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.67 Total: 45.51 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -67.68 0.00 -67.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.867 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds