Wall clock time and date at job start Tue Mar 31 2020 11:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00307 * 2 1 4 4 H 1.08999 * 110.77435 * 26.76489 * 3 2 1 5 5 C 1.54315 * 110.71936 * 263.52509 * 3 2 1 6 6 N 1.47023 * 107.27241 * 219.44329 * 5 3 2 7 7 C 1.34775 * 125.65072 * 178.89619 * 6 5 3 8 8 O 1.21588 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99745 * 179.97438 * 7 6 5 10 10 C 1.40194 * 120.00008 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.96989 * 359.71317 * 10 9 7 12 12 C 1.35246 * 107.86775 * 179.83003 * 11 10 9 13 13 N 1.34969 * 107.85470 * 0.43183 * 12 11 10 14 14 C 1.46507 * 125.97241 * 179.70508 * 13 12 11 15 15 C 1.50698 * 109.46836 * 125.00061 * 14 13 12 16 16 H 1.08007 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99828 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99653 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47014 * 60.00551 * 19 17 15 21 21 H 1.48511 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47544 * 299.99813 * 19 17 15 23 23 N 1.31211 * 125.97465 * 180.02562 * 10 9 7 24 24 C 1.47426 * 108.69981 * 358.93706 * 6 5 3 25 25 C 1.54907 * 104.82942 * 24.13288 * 24 6 5 26 26 H 1.09005 * 111.04094 * 81.08152 * 25 24 6 27 27 O 1.42903 * 111.00431 * 204.90944 * 25 24 6 28 28 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47068 * 300.00163 * 1 2 3 30 30 H 1.08997 * 109.47286 * 59.99789 * 1 2 3 31 31 H 1.09003 * 109.88697 * 338.85804 * 5 3 2 32 32 H 1.08998 * 109.88724 * 99.87085 * 5 3 2 33 33 H 0.97001 * 120.00444 * 359.97438 * 9 7 6 34 34 H 1.07999 * 126.06792 * 0.02562 * 11 10 9 35 35 H 1.08000 * 126.07382 * 180.14091 * 12 11 10 36 36 H 1.08994 * 109.46972 * 244.99996 * 14 13 12 37 37 H 1.08994 * 109.47048 * 5.00225 * 14 13 12 38 38 H 0.97001 * 119.99778 * 179.97438 * 18 17 15 39 39 H 1.08994 * 110.37345 * 265.29076 * 24 6 5 40 40 H 1.09007 * 110.36591 * 142.96519 * 24 6 5 41 41 H 0.96700 * 114.00311 * 292.19952 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3811 1.7380 -1.4341 6 7 3.6686 2.4438 -1.3581 7 6 4.3440 2.9606 -2.4037 8 8 3.8926 2.8608 -3.5282 9 7 5.5198 3.5880 -2.2026 10 6 6.2221 4.1261 -3.2900 11 6 5.8221 4.0787 -4.6350 12 6 6.7650 4.7100 -5.3709 13 7 7.7316 5.1336 -4.5295 14 6 8.9458 5.8600 -4.9097 15 6 9.0313 7.1421 -4.1223 16 1 8.2588 7.3907 -3.4096 17 6 10.0964 7.9971 -4.3108 18 7 11.0373 7.6941 -5.1782 19 14 10.2020 9.5866 -3.3353 20 1 10.2450 9.2748 -1.8841 21 1 11.4329 10.3230 -3.7205 22 1 9.0122 10.4261 -3.6263 23 7 7.3710 4.7570 -3.2295 24 6 4.0988 2.4917 0.0511 25 6 3.3817 1.2957 0.7255 26 1 3.9156 0.3637 0.5395 27 8 3.2209 1.5193 2.1278 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 2.4768 0.8601 -2.0731 32 1 1.6140 2.4030 -1.8308 33 1 5.8797 3.6679 -1.3054 34 1 4.9198 3.6221 -5.0143 35 1 6.7498 4.8463 -6.4422 36 1 9.8193 5.2439 -4.6968 37 1 8.9135 6.0892 -5.9747 38 1 11.7864 8.2959 -5.3111 39 1 3.7873 3.4293 0.5113 40 1 5.1803 2.3744 0.1218 41 1 4.0512 1.5219 2.6234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364252106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:38 Heat of formation + Delta-G solvation = -18.751570 kcal Electronic energy + Delta-G solvation = -25119.825184 eV Core-core repulsion = 21230.896170 eV Total energy + Delta-G solvation = -3888.929015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95012 -40.17759 -38.87162 -37.22890 -35.82240 -34.76665 -33.35383 -31.27106 -30.16686 -29.30280 -28.78698 -27.06294 -26.49893 -24.07995 -22.91343 -21.77470 -21.14671 -20.25900 -19.42405 -18.36515 -18.17598 -16.78002 -16.63229 -16.56063 -15.93009 -15.84614 -15.67324 -15.26588 -14.76532 -14.56183 -14.37091 -14.01889 -13.72018 -13.32030 -13.25080 -13.09037 -12.78517 -12.41788 -12.29916 -12.20727 -11.89440 -11.75978 -11.20000 -11.06677 -10.87984 -10.77838 -10.46654 -10.26230 -10.20062 -10.06404 -9.70649 -9.51214 -8.97964 -8.62866 -8.11494 -7.42876 -6.24139 -4.29239 2.09814 2.61910 3.03120 3.11929 3.25292 3.27083 3.28547 3.33874 3.73702 3.80357 3.90151 4.16361 4.24826 4.33553 4.51455 4.69932 4.81328 4.96041 5.00572 5.04932 5.10861 5.28162 5.32307 5.36417 5.39843 5.52628 5.78393 5.80242 6.26184 6.52862 6.59339 6.66780 6.79159 6.96541 7.07783 7.09217 7.45965 7.68540 7.77211 7.92301 8.06121 8.49731 8.64744 8.80288 9.36216 10.84506 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.002539 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.633702 B =11024.326076 C =11790.379501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.084 3.916 4 H 0.091 0.909 5 C 0.112 3.888 6 N -0.630 5.630 7 C 0.734 3.266 8 O -0.559 6.559 9 N -0.640 5.640 10 C 0.274 3.726 11 C -0.286 4.286 12 C 0.052 3.948 13 N -0.320 5.320 14 C 0.259 3.741 15 C -0.529 4.529 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.307 5.307 24 C 0.067 3.933 25 C 0.096 3.904 26 H 0.088 0.912 27 O -0.553 6.553 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.406 0.594 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.268 0.732 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.622 -13.869 11.688 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C 0.025 3.975 4 H 0.109 0.891 5 C -0.012 4.012 6 N -0.372 5.372 7 C 0.435 3.565 8 O -0.434 6.434 9 N -0.290 5.290 10 C 0.021 3.979 11 C -0.318 4.318 12 C -0.098 4.098 13 N -0.102 5.102 14 C 0.141 3.859 15 C -0.567 4.567 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.201 1.201 23 N -0.138 5.138 24 C -0.058 4.058 25 C 0.036 3.964 26 H 0.106 0.894 27 O -0.358 6.358 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.241 0.759 34 H 0.178 0.822 35 H 0.186 0.814 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.219 -13.512 11.258 24.614 hybrid contribution 0.194 0.915 0.579 1.100 sum -17.026 -12.597 11.837 24.263 Atomic orbital electron populations 1.22881 0.80229 1.03229 1.00416 1.87938 1.20419 1.25893 1.94673 1.23048 0.94640 0.86220 0.93549 0.89067 1.22195 0.84702 0.97465 0.96815 1.47112 1.23406 1.61167 1.05542 1.15020 0.79767 0.78389 0.83309 1.90886 1.68725 1.63232 1.20552 1.41339 1.20543 1.58130 1.08994 1.18764 0.92937 0.98991 0.87245 1.21506 1.05035 1.14504 0.90707 1.22558 0.90409 0.99117 0.97701 1.49069 1.18468 1.40841 1.01803 1.19736 0.78105 0.91168 0.96847 1.21219 1.08645 1.03268 1.23578 0.91379 1.24945 0.95021 0.98732 0.95394 1.69906 1.11289 1.37804 1.34354 0.86384 0.77451 0.82297 0.80335 1.19963 1.21046 1.20053 1.77319 1.13294 1.21101 1.02066 1.23031 1.00554 0.99939 0.82227 1.22950 0.95269 0.96848 0.81321 0.89390 1.86511 1.36266 1.95266 1.17744 0.89226 0.93565 0.93564 0.89781 0.90463 0.75903 0.82211 0.81450 0.93734 0.92510 0.92273 0.89868 0.89761 0.76527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.37 -3.27 10.43 -35.23 -0.37 -3.64 16 3 C 0.08 0.69 3.18 -24.91 -0.08 0.61 16 4 H 0.09 0.67 7.83 -51.93 -0.41 0.27 16 5 C 0.11 1.09 6.64 -3.07 -0.02 1.07 16 6 N -0.63 -7.12 3.33 -176.24 -0.59 -7.70 16 7 C 0.73 11.39 8.46 -86.92 -0.74 10.65 16 8 O -0.56 -10.46 13.80 5.29 0.07 -10.39 16 9 N -0.64 -10.29 5.41 -15.51 -0.08 -10.37 16 10 C 0.27 5.60 8.11 -154.36 -1.25 4.35 16 11 C -0.29 -5.79 9.61 -39.83 -0.38 -6.17 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 13 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 14 C 0.26 6.59 6.26 -5.19 -0.03 6.55 16 15 C -0.53 -14.70 9.24 -34.44 -0.32 -15.02 16 16 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.30 13.29 55.43 0.74 -24.57 16 19 Si 0.91 21.33 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 N -0.31 -7.09 12.42 31.44 0.39 -6.70 16 24 C 0.07 0.52 6.31 -2.53 -0.02 0.50 16 25 C 0.10 0.70 4.15 -24.59 -0.10 0.60 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 O -0.55 -3.72 13.47 -35.23 -0.47 -4.20 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.24 8.11 -51.93 -0.42 -0.18 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.41 5.35 7.30 -40.82 -0.30 5.05 16 34 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 35 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 36 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.55 7.30 -51.92 -0.38 0.17 16 41 H 0.39 0.95 9.12 45.56 0.42 1.36 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -34.83 351.09 -7.15 -41.97 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.74 Total: 4.84 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -2.14 Total: 6.87 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.23 Total: -57.05 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.77 Total: -18.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.83 -7.15 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364252106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.223 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds