Wall clock time and date at job start Tue Mar 31 2020 11:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00307 * 2 1 4 4 H 1.08999 * 110.77435 * 26.76489 * 3 2 1 5 5 C 1.54315 * 110.71936 * 263.52509 * 3 2 1 6 6 N 1.47023 * 107.27241 * 219.44329 * 5 3 2 7 7 C 1.34775 * 125.65072 * 178.89619 * 6 5 3 8 8 O 1.21588 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99745 * 179.97438 * 7 6 5 10 10 C 1.40194 * 120.00008 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.96989 * 359.71317 * 10 9 7 12 12 C 1.35246 * 107.86775 * 179.83003 * 11 10 9 13 13 N 1.34969 * 107.85470 * 0.43183 * 12 11 10 14 14 C 1.46507 * 125.97241 * 179.70508 * 13 12 11 15 15 C 1.50698 * 109.46836 * 125.00061 * 14 13 12 16 16 H 1.08007 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99828 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99653 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47014 * 60.00551 * 19 17 15 21 21 H 1.48511 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47544 * 299.99813 * 19 17 15 23 23 N 1.31211 * 125.97465 * 180.02562 * 10 9 7 24 24 C 1.47426 * 108.69981 * 358.93706 * 6 5 3 25 25 C 1.54907 * 104.82942 * 24.13288 * 24 6 5 26 26 H 1.09005 * 111.04094 * 81.08152 * 25 24 6 27 27 O 1.42903 * 111.00431 * 204.90944 * 25 24 6 28 28 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47068 * 300.00163 * 1 2 3 30 30 H 1.08997 * 109.47286 * 59.99789 * 1 2 3 31 31 H 1.09003 * 109.88697 * 338.85804 * 5 3 2 32 32 H 1.08998 * 109.88724 * 99.87085 * 5 3 2 33 33 H 0.97001 * 120.00444 * 359.97438 * 9 7 6 34 34 H 1.07999 * 126.06792 * 0.02562 * 11 10 9 35 35 H 1.08000 * 126.07382 * 180.14091 * 12 11 10 36 36 H 1.08994 * 109.46972 * 244.99996 * 14 13 12 37 37 H 1.08994 * 109.47048 * 5.00225 * 14 13 12 38 38 H 0.97001 * 119.99778 * 179.97438 * 18 17 15 39 39 H 1.08994 * 110.37345 * 265.29076 * 24 6 5 40 40 H 1.09007 * 110.36591 * 142.96519 * 24 6 5 41 41 H 0.96700 * 114.00311 * 292.19952 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3811 1.7380 -1.4341 6 7 3.6686 2.4438 -1.3581 7 6 4.3440 2.9606 -2.4037 8 8 3.8926 2.8608 -3.5282 9 7 5.5198 3.5880 -2.2026 10 6 6.2221 4.1261 -3.2900 11 6 5.8221 4.0787 -4.6350 12 6 6.7650 4.7100 -5.3709 13 7 7.7316 5.1336 -4.5295 14 6 8.9458 5.8600 -4.9097 15 6 9.0313 7.1421 -4.1223 16 1 8.2588 7.3907 -3.4096 17 6 10.0964 7.9971 -4.3108 18 7 11.0373 7.6941 -5.1782 19 14 10.2020 9.5866 -3.3353 20 1 10.2450 9.2748 -1.8841 21 1 11.4329 10.3230 -3.7205 22 1 9.0122 10.4261 -3.6263 23 7 7.3710 4.7570 -3.2295 24 6 4.0988 2.4917 0.0511 25 6 3.3817 1.2957 0.7255 26 1 3.9156 0.3637 0.5395 27 8 3.2209 1.5193 2.1278 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 2.4768 0.8601 -2.0731 32 1 1.6140 2.4030 -1.8308 33 1 5.8797 3.6679 -1.3054 34 1 4.9198 3.6221 -5.0143 35 1 6.7498 4.8463 -6.4422 36 1 9.8193 5.2439 -4.6968 37 1 8.9135 6.0892 -5.9747 38 1 11.7864 8.2959 -5.3111 39 1 3.7873 3.4293 0.5113 40 1 5.1803 2.3744 0.1218 41 1 4.0512 1.5219 2.6234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364252106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:37 Heat of formation + Delta-G solvation = -45.764062 kcal Electronic energy + Delta-G solvation = -25120.996534 eV Core-core repulsion = 21230.896170 eV Total energy + Delta-G solvation = -3890.100364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31011 -41.37557 -39.83902 -37.84327 -36.61935 -36.24193 -35.27555 -32.90567 -31.23891 -30.88309 -29.50562 -28.54235 -27.44850 -25.31098 -24.45116 -22.75966 -22.27991 -21.69237 -20.75078 -19.28409 -18.94907 -18.67416 -18.13221 -17.46148 -17.11037 -16.93183 -16.60962 -16.29112 -16.02653 -15.83581 -15.55332 -15.34583 -14.77816 -14.52919 -14.22024 -14.01467 -13.95489 -13.78899 -13.74030 -13.58682 -13.02893 -12.94878 -12.71973 -12.38342 -12.27851 -12.11441 -11.77366 -11.70608 -11.45495 -11.37382 -11.09472 -10.71956 -10.71072 -9.98020 -9.72143 -9.07075 -8.31994 -6.46113 0.91862 1.05859 1.39011 1.40851 1.49538 1.63672 1.92226 2.32185 2.35409 2.55801 2.73132 2.99697 3.15443 3.30776 3.66188 3.91790 3.95646 4.09185 4.25589 4.26523 4.43368 4.45301 4.55568 4.62093 4.64789 4.72746 4.80437 4.87689 4.89150 4.93453 4.98070 5.03446 5.27592 5.56384 5.67300 5.83788 5.92679 6.10658 6.28323 6.52915 6.66317 6.79153 7.06611 7.23623 7.27639 8.75338 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.002539 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.633702 B =11024.326076 C =11790.379501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.390 6.390 3 C 0.088 3.912 4 H 0.101 0.899 5 C 0.110 3.890 6 N -0.623 5.623 7 C 0.731 3.269 8 O -0.595 6.595 9 N -0.632 5.632 10 C 0.283 3.717 11 C -0.293 4.293 12 C 0.059 3.941 13 N -0.344 5.344 14 C 0.273 3.727 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.270 1.270 23 N -0.345 5.345 24 C 0.064 3.936 25 C 0.106 3.894 26 H 0.089 0.911 27 O -0.561 6.561 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.419 0.581 34 H 0.166 0.834 35 H 0.202 0.798 36 H 0.022 0.978 37 H 0.059 0.941 38 H 0.273 0.727 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.627 -13.763 13.112 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.308 6.308 3 C 0.029 3.971 4 H 0.119 0.881 5 C -0.013 4.013 6 N -0.363 5.363 7 C 0.432 3.568 8 O -0.473 6.473 9 N -0.284 5.284 10 C 0.028 3.972 11 C -0.324 4.324 12 C -0.090 4.090 13 N -0.126 5.126 14 C 0.154 3.846 15 C -0.586 4.586 16 H 0.071 0.929 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.195 1.195 23 N -0.176 5.176 24 C -0.059 4.059 25 C 0.045 3.955 26 H 0.107 0.893 27 O -0.369 6.369 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.219 0.781 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -18.245 -13.439 12.749 26.001 hybrid contribution 0.381 0.761 0.195 0.873 sum -17.864 -12.678 12.943 25.444 Atomic orbital electron populations 1.23067 0.78884 1.04290 1.01139 1.87916 1.22004 1.26190 1.94665 1.23022 0.95350 0.86349 0.92330 0.88095 1.22313 0.83927 0.96916 0.98151 1.47077 1.23390 1.59706 1.06131 1.15141 0.79523 0.78331 0.83760 1.90848 1.69476 1.64566 1.22371 1.41298 1.20566 1.57892 1.08662 1.19042 0.92137 0.97431 0.88591 1.21671 1.05218 1.14699 0.90852 1.23157 0.89154 0.97579 0.99113 1.48842 1.18832 1.42334 1.02590 1.19345 0.78508 0.90181 0.96557 1.21368 1.08700 1.04601 1.23902 0.92926 1.25742 0.94471 1.01810 0.96221 1.69986 1.11685 1.38983 1.35241 0.85406 0.77879 0.78380 0.78796 1.19765 1.19844 1.19536 1.77240 1.14864 1.23030 1.02432 1.23283 1.01707 1.00932 0.79963 1.22788 0.94509 0.96432 0.81723 0.89323 1.86478 1.37995 1.95172 1.17270 0.88112 0.92740 0.92929 0.90852 0.90280 0.74318 0.81710 0.78101 0.95993 0.92311 0.91842 0.88712 0.88205 0.74332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.39 -6.27 10.43 -148.98 -1.55 -7.83 16 3 C 0.09 1.28 3.18 31.78 0.10 1.38 16 4 H 0.10 1.27 7.83 -2.39 -0.02 1.25 16 5 C 0.11 2.03 6.64 86.73 0.58 2.61 16 6 N -0.62 -13.23 3.33 -829.77 -2.76 -15.99 16 7 C 0.73 22.10 8.46 179.05 1.51 23.62 16 8 O -0.60 -22.09 13.80 -3.99 -0.06 -22.15 16 9 N -0.63 -19.83 5.41 -321.23 -1.74 -21.57 16 10 C 0.28 11.52 8.11 133.31 1.08 12.60 16 11 C -0.29 -11.76 9.61 22.11 0.21 -11.55 16 12 C 0.06 2.34 11.44 83.52 0.96 3.29 16 13 N -0.34 -16.25 3.67 -351.84 -1.29 -17.54 16 14 C 0.27 14.16 6.26 85.63 0.54 14.70 16 15 C -0.55 -30.84 9.24 25.60 0.24 -30.60 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 0.99 5.46 84.66 0.46 1.45 16 18 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 19 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 N -0.34 -16.08 12.42 -54.43 -0.68 -16.76 16 24 C 0.06 0.85 6.31 86.85 0.55 1.40 16 25 C 0.11 1.31 4.15 31.98 0.13 1.45 16 26 H 0.09 1.11 8.14 -2.38 -0.02 1.10 16 27 O -0.56 -6.06 13.47 -148.98 -2.01 -8.07 16 28 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.05 0.46 8.11 -2.39 -0.02 0.44 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.42 10.54 7.30 -92.71 -0.68 9.86 16 34 H 0.17 6.50 5.91 -2.91 -0.02 6.48 16 35 H 0.20 6.33 8.06 -2.91 -0.02 6.30 16 36 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 38 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.04 7.30 -2.38 -0.02 1.03 16 41 H 0.41 0.85 9.12 -74.06 -0.68 0.18 16 Total: -1.00 -74.61 351.09 -0.46 -75.07 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.28 Total: 19.39 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 7.59 Total: 21.79 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -6.18 Total: -123.64 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -3.62 Total: -38.05 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -74.61 -0.46 -75.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364252106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.304 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds