Wall clock time and date at job start Tue Mar 31 2020 10:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46808 * 2 1 4 4 C 1.50695 * 109.47366 * 119.99542 * 2 1 3 5 5 N 1.30000 * 126.21952 * 300.02992 * 4 2 1 6 6 O 1.21285 * 110.45849 * 179.73535 * 5 4 2 7 7 C 1.34003 * 109.75749 * 359.97438 * 6 5 4 8 8 N 1.37967 * 126.65403 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99894 * 359.97234 * 8 7 6 10 10 O 1.21555 * 120.00402 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00143 * 180.02562 * 9 8 7 12 12 C 1.47025 * 125.64650 * 359.69330 * 11 9 8 13 13 C 1.54335 * 107.26730 * 178.84814 * 12 11 9 14 14 C 1.55152 * 103.02075 * 338.14415 * 13 12 11 15 15 O 1.42901 * 111.00285 * 277.23020 * 14 13 12 16 16 C 1.50702 * 111.03780 * 153.39351 * 14 13 12 17 17 H 1.07996 * 119.99772 * 272.60836 * 16 14 13 18 18 C 1.37881 * 119.99767 * 92.61113 * 16 14 13 19 19 N 1.31516 * 119.99675 * 173.52148 * 18 16 14 20 20 Si 1.86799 * 120.00144 * 353.51244 * 18 16 14 21 21 H 1.48506 * 109.46752 * 87.32507 * 20 18 16 22 22 H 1.48492 * 109.47234 * 207.32749 * 20 18 16 23 23 H 1.48495 * 109.47370 * 327.32937 * 20 18 16 24 24 C 1.47424 * 125.65308 * 180.02562 * 11 9 8 25 25 N 1.32017 * 106.69016 * 0.02562 * 7 6 5 26 26 H 1.08992 * 109.47600 * 60.00348 * 1 2 3 27 27 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47258 * 299.99893 * 1 2 3 29 29 H 1.08992 * 109.47456 * 240.00065 * 2 1 3 30 30 H 1.08999 * 109.47073 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46960 * 300.00386 * 3 2 1 32 32 H 1.09001 * 109.47124 * 60.00025 * 3 2 1 33 33 H 0.97004 * 120.00067 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.88198 * 298.39776 * 12 11 9 35 35 H 1.09002 * 109.88304 * 59.55728 * 12 11 9 36 36 H 1.08998 * 110.85020 * 219.67376 * 13 12 11 37 37 H 1.09006 * 110.51435 * 96.45399 * 13 12 11 38 38 H 0.96697 * 114.00350 * 168.39804 * 15 14 13 39 39 H 0.96997 * 119.99705 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36257 * 322.92602 * 24 11 9 41 41 H 1.08998 * 110.36780 * 85.14300 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7936 -0.3734 2.4631 6 8 2.3339 -1.1461 3.2260 7 6 2.9920 -2.0836 2.5305 8 7 3.7255 -3.1307 3.0492 9 6 3.8315 -3.2831 4.3840 10 8 3.2805 -2.4984 5.1311 11 7 4.5486 -4.3057 4.8907 12 6 5.2576 -5.3268 4.1057 13 6 5.9579 -6.2698 5.1069 14 6 6.0635 -5.4024 6.3889 15 8 7.2013 -4.5398 6.3314 16 6 6.1052 -6.2651 7.6239 17 1 5.1854 -6.5761 8.0966 18 6 7.3178 -6.6572 8.1502 19 7 7.3598 -7.3011 9.2962 20 14 8.9008 -6.2741 7.2355 21 1 9.3843 -4.9255 7.6263 22 1 9.9295 -7.2880 7.5803 23 1 8.6470 -6.3042 5.7727 24 6 4.7461 -4.5897 6.3238 25 7 2.8032 -1.8102 1.2529 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 4.1650 -3.7572 2.4530 34 1 4.5467 -5.8883 3.4996 35 1 6.0005 -4.8520 3.4648 36 1 6.9482 -6.5502 4.7482 37 1 5.3478 -7.1546 5.2891 38 1 7.2139 -3.8589 7.0179 39 1 8.2128 -7.5772 9.6663 40 1 4.8457 -3.6602 6.8844 41 1 3.9152 -5.1788 6.7119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414459194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:19 Heat of formation + Delta-G solvation = 3.208411 kcal Electronic energy + Delta-G solvation = -25857.672004 eV Core-core repulsion = 21969.695245 eV Total energy + Delta-G solvation = -3887.976758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.52255 -40.56973 -38.24236 -37.02605 -35.84182 -35.02556 -33.99898 -32.47266 -31.21988 -30.22064 -28.55623 -27.55279 -25.75612 -24.81717 -23.83689 -22.97440 -21.48028 -20.01594 -19.62870 -18.81411 -18.20462 -17.89425 -17.58660 -16.68229 -15.96445 -15.37079 -15.24702 -15.16987 -14.79325 -14.53131 -14.12694 -13.81021 -13.74031 -12.86065 -12.71409 -12.59057 -12.55269 -12.33888 -12.09295 -12.02889 -11.88116 -11.77248 -11.67448 -11.43159 -11.19750 -11.04449 -10.96704 -10.67046 -10.51538 -10.40778 -10.33493 -9.34679 -9.22170 -8.82567 -8.64295 -8.36913 -6.28035 -4.41566 1.11400 1.55618 2.07262 2.90217 3.04210 3.38877 3.46114 3.47400 3.61335 3.86745 4.24551 4.41014 4.68516 4.69841 4.80596 4.87892 4.95799 5.12383 5.25866 5.31147 5.34426 5.44808 5.45334 5.53575 5.59675 5.62371 5.72197 5.83970 5.87709 5.94688 6.00192 6.15268 6.28745 6.42144 6.55604 6.64683 6.90165 7.33105 7.60093 8.02186 8.16047 8.24420 8.49880 8.71789 9.32314 10.80527 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.002763 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.520181 B =10132.145131 C =10263.236272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.001 4.001 3 C -0.145 4.145 4 C 0.195 3.805 5 N -0.387 5.387 6 O 0.088 5.912 7 C 0.435 3.565 8 N -0.615 5.615 9 C 0.715 3.285 10 O -0.552 6.552 11 N -0.611 5.611 12 C 0.090 3.910 13 C -0.119 4.119 14 C 0.221 3.779 15 O -0.559 6.559 16 C -0.555 4.555 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.884 5.884 20 Si 0.952 3.048 21 H -0.293 1.293 22 H -0.326 1.326 23 H -0.270 1.270 24 C 0.105 3.895 25 N -0.516 5.516 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.435 0.565 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.373 0.627 39 H 0.268 0.732 40 H 0.076 0.924 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 9.656 -18.436 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 C -0.204 4.204 4 C -0.080 4.080 5 N -0.101 5.101 6 O 0.037 5.963 7 C 0.125 3.875 8 N -0.278 5.278 9 C 0.416 3.584 10 O -0.425 6.425 11 N -0.347 5.347 12 C -0.033 4.033 13 C -0.157 4.157 14 C 0.180 3.820 15 O -0.367 6.367 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.519 5.519 20 Si 0.787 3.213 21 H -0.220 1.220 22 H -0.257 1.257 23 H -0.196 1.196 24 C -0.016 4.016 25 N -0.260 5.260 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.276 0.724 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.222 0.778 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.655 10.376 -18.318 22.762 hybrid contribution 1.099 -0.168 -0.051 1.113 sum -7.556 10.208 -18.369 22.332 Atomic orbital electron populations 1.21852 0.92854 1.02644 1.02993 1.19544 0.96379 0.95338 0.90900 1.21855 1.01552 0.93968 1.02987 1.25451 0.95841 0.91995 0.94664 1.74610 1.19099 1.13917 1.02475 1.85658 1.48491 1.28818 1.33324 1.23747 0.91033 0.87979 0.84745 1.41564 1.51545 1.26606 1.08088 1.15354 0.80643 0.82272 0.80175 1.91056 1.50356 1.44585 1.56510 1.47748 1.50663 1.26167 1.10079 1.22303 0.95378 0.90125 0.95470 1.22987 1.00873 0.97540 0.94331 1.20260 0.80405 0.86889 0.94436 1.86117 1.45742 1.47115 1.57736 1.21055 0.95334 1.33130 1.09654 0.89900 1.25120 1.00418 0.93263 0.94211 1.69961 1.27018 1.37424 1.17461 0.85639 0.79801 0.75615 0.80236 1.22012 1.25717 1.19577 1.23254 1.00686 1.00624 0.77061 1.72211 1.23042 1.17192 1.13583 0.91080 0.92243 0.91736 0.88028 0.92230 0.91091 0.91729 0.72390 0.91847 0.91666 0.89746 0.89239 0.77846 0.92263 0.90529 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.17 37.16 0.34 -0.77 16 2 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 3 C -0.15 -1.12 9.18 37.16 0.34 -0.78 16 4 C 0.19 2.51 6.71 -156.47 -1.05 1.46 16 5 N -0.39 -5.83 12.15 31.12 0.38 -5.45 16 6 O 0.09 1.47 9.69 -4.43 -0.04 1.43 16 7 C 0.43 6.37 8.99 -87.10 -0.78 5.59 16 8 N -0.61 -8.13 5.32 -17.65 -0.09 -8.22 16 9 C 0.71 11.66 8.45 -86.92 -0.73 10.93 16 10 O -0.55 -10.96 15.40 -16.29 -0.25 -11.21 16 11 N -0.61 -9.69 3.33 -176.22 -0.59 -10.28 16 12 C 0.09 1.21 6.15 -3.06 -0.02 1.19 16 13 C -0.12 -2.03 5.90 -24.89 -0.15 -2.18 16 14 C 0.22 4.40 0.70 -89.61 -0.06 4.34 16 15 O -0.56 -11.15 8.52 -35.23 -0.30 -11.45 16 16 C -0.55 -13.64 8.89 -34.44 -0.31 -13.95 16 17 H 0.08 2.23 8.00 -52.49 -0.42 1.81 16 18 C 0.08 1.99 5.46 -17.82 -0.10 1.89 16 19 N -0.88 -25.10 13.96 55.43 0.77 -24.33 16 20 Si 0.95 22.10 24.93 -169.99 -4.24 17.86 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.33 -7.86 7.11 56.52 0.40 -7.46 16 23 H -0.27 -6.02 5.42 56.52 0.31 -5.72 16 24 C 0.11 1.91 6.07 -2.52 -0.02 1.90 16 25 N -0.52 -7.03 11.59 -12.97 -0.15 -7.18 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.43 4.37 7.80 -40.82 -0.32 4.05 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.49 6.65 -51.93 -0.35 1.14 16 37 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.37 6.68 8.99 45.56 0.41 7.09 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 41 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -31.40 340.64 -7.18 -38.58 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.96 Total: 5.83 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -2.84 Total: 9.30 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.32 Total: -55.46 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.59 Total: -21.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.24 Total: 17.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.40 -7.18 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414459194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.786 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds