Wall clock time and date at job start Tue Mar 31 2020 10:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46808 * 2 1 4 4 C 1.50695 * 109.47366 * 119.99542 * 2 1 3 5 5 N 1.30000 * 126.21952 * 300.02992 * 4 2 1 6 6 O 1.21285 * 110.45849 * 179.73535 * 5 4 2 7 7 C 1.34003 * 109.75749 * 359.97438 * 6 5 4 8 8 N 1.37967 * 126.65403 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99894 * 359.97234 * 8 7 6 10 10 O 1.21555 * 120.00402 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00143 * 180.02562 * 9 8 7 12 12 C 1.47025 * 125.64650 * 359.69330 * 11 9 8 13 13 C 1.54335 * 107.26730 * 178.84814 * 12 11 9 14 14 C 1.55152 * 103.02075 * 338.14415 * 13 12 11 15 15 O 1.42901 * 111.00285 * 277.23020 * 14 13 12 16 16 C 1.50702 * 111.03780 * 153.39351 * 14 13 12 17 17 H 1.07996 * 119.99772 * 272.60836 * 16 14 13 18 18 C 1.37881 * 119.99767 * 92.61113 * 16 14 13 19 19 N 1.31516 * 119.99675 * 173.52148 * 18 16 14 20 20 Si 1.86799 * 120.00144 * 353.51244 * 18 16 14 21 21 H 1.48506 * 109.46752 * 87.32507 * 20 18 16 22 22 H 1.48492 * 109.47234 * 207.32749 * 20 18 16 23 23 H 1.48495 * 109.47370 * 327.32937 * 20 18 16 24 24 C 1.47424 * 125.65308 * 180.02562 * 11 9 8 25 25 N 1.32017 * 106.69016 * 0.02562 * 7 6 5 26 26 H 1.08992 * 109.47600 * 60.00348 * 1 2 3 27 27 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47258 * 299.99893 * 1 2 3 29 29 H 1.08992 * 109.47456 * 240.00065 * 2 1 3 30 30 H 1.08999 * 109.47073 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46960 * 300.00386 * 3 2 1 32 32 H 1.09001 * 109.47124 * 60.00025 * 3 2 1 33 33 H 0.97004 * 120.00067 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.88198 * 298.39776 * 12 11 9 35 35 H 1.09002 * 109.88304 * 59.55728 * 12 11 9 36 36 H 1.08998 * 110.85020 * 219.67376 * 13 12 11 37 37 H 1.09006 * 110.51435 * 96.45399 * 13 12 11 38 38 H 0.96697 * 114.00350 * 168.39804 * 15 14 13 39 39 H 0.96997 * 119.99705 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36257 * 322.92602 * 24 11 9 41 41 H 1.08998 * 110.36780 * 85.14300 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7936 -0.3734 2.4631 6 8 2.3339 -1.1461 3.2260 7 6 2.9920 -2.0836 2.5305 8 7 3.7255 -3.1307 3.0492 9 6 3.8315 -3.2831 4.3840 10 8 3.2805 -2.4984 5.1311 11 7 4.5486 -4.3057 4.8907 12 6 5.2576 -5.3268 4.1057 13 6 5.9579 -6.2698 5.1069 14 6 6.0635 -5.4024 6.3889 15 8 7.2013 -4.5398 6.3314 16 6 6.1052 -6.2651 7.6239 17 1 5.1854 -6.5761 8.0966 18 6 7.3178 -6.6572 8.1502 19 7 7.3598 -7.3011 9.2962 20 14 8.9008 -6.2741 7.2355 21 1 9.3843 -4.9255 7.6263 22 1 9.9295 -7.2880 7.5803 23 1 8.6470 -6.3042 5.7727 24 6 4.7461 -4.5897 6.3238 25 7 2.8032 -1.8102 1.2529 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 4.1650 -3.7572 2.4530 34 1 4.5467 -5.8883 3.4996 35 1 6.0005 -4.8520 3.4648 36 1 6.9482 -6.5502 4.7482 37 1 5.3478 -7.1546 5.2891 38 1 7.2139 -3.8589 7.0179 39 1 8.2128 -7.5772 9.6663 40 1 4.8457 -3.6602 6.8844 41 1 3.9152 -5.1788 6.7119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414459194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:18 Heat of formation + Delta-G solvation = -21.287511 kcal Electronic energy + Delta-G solvation = -25858.734226 eV Core-core repulsion = 21969.695245 eV Total energy + Delta-G solvation = -3889.038981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -46.60900 -41.87235 -39.69279 -37.92086 -37.01651 -36.50910 -34.95698 -34.43893 -32.47561 -31.50148 -30.00446 -28.13198 -27.42607 -25.81179 -25.10215 -24.19449 -22.54784 -21.58918 -20.71473 -20.05172 -19.36944 -19.30106 -18.98664 -17.77257 -17.29624 -17.05645 -16.68729 -16.45621 -16.04223 -15.53889 -15.24070 -15.16990 -14.54364 -14.42518 -14.15965 -13.87962 -13.63607 -13.55981 -13.24769 -13.20783 -13.16435 -12.75718 -12.66799 -12.51070 -12.37476 -12.31700 -12.21015 -11.96762 -11.87068 -11.86144 -11.82232 -11.23587 -10.62658 -10.44475 -10.35564 -9.70080 -8.31913 -6.45987 -0.01953 0.40550 1.03237 1.53826 1.56718 1.72645 1.77268 1.79255 2.41486 2.47519 2.88430 2.99783 3.27055 3.49060 3.75643 3.98744 4.01262 4.06208 4.06521 4.24828 4.38619 4.49995 4.58240 4.59146 4.72987 4.78722 4.84519 4.86256 4.87364 4.91232 5.04373 5.05863 5.21365 5.26157 5.31667 5.34991 5.47285 5.56974 6.06882 6.37794 6.60995 6.90576 6.93140 7.12174 7.32181 8.80793 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.040657 B = 0.002763 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.520181 B =10132.145131 C =10263.236272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 C -0.142 4.142 4 C 0.201 3.799 5 N -0.406 5.406 6 O 0.056 5.944 7 C 0.428 3.572 8 N -0.595 5.595 9 C 0.720 3.280 10 O -0.591 6.591 11 N -0.608 5.608 12 C 0.093 3.907 13 C -0.118 4.118 14 C 0.216 3.784 15 O -0.559 6.559 16 C -0.546 4.546 17 H 0.047 0.953 18 C 0.025 3.975 19 N -0.937 5.937 20 Si 1.009 2.991 21 H -0.289 1.289 22 H -0.341 1.341 23 H -0.250 1.250 24 C 0.114 3.886 25 N -0.511 5.511 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.451 0.549 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.381 0.619 39 H 0.266 0.734 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 10.525 -22.259 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 C -0.200 4.200 4 C -0.073 4.073 5 N -0.125 5.125 6 O 0.010 5.990 7 C 0.118 3.882 8 N -0.259 5.259 9 C 0.421 3.579 10 O -0.467 6.467 11 N -0.343 5.343 12 C -0.028 4.028 13 C -0.156 4.156 14 C 0.175 3.825 15 O -0.368 6.368 16 C -0.584 4.584 17 H 0.065 0.935 18 C -0.175 4.175 19 N -0.575 5.575 20 Si 0.843 3.157 21 H -0.216 1.216 22 H -0.274 1.274 23 H -0.174 1.174 24 C -0.008 4.008 25 N -0.256 5.256 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.297 0.703 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.624 11.225 -22.184 26.316 hybrid contribution 0.988 -0.414 1.117 1.548 sum -7.636 10.811 -21.067 24.880 Atomic orbital electron populations 1.21848 0.91780 1.02561 1.03762 1.19876 0.97204 0.95768 0.89601 1.21852 1.01165 0.93208 1.03762 1.26305 0.94345 0.91332 0.95300 1.74639 1.20186 1.14433 1.03275 1.85630 1.49368 1.29651 1.34399 1.23988 0.91131 0.88035 0.85042 1.41201 1.51102 1.26494 1.07149 1.15299 0.80150 0.81697 0.80776 1.91041 1.51853 1.45969 1.57884 1.47582 1.50803 1.26617 1.09287 1.22463 0.96547 0.89203 0.94555 1.22885 1.01563 0.97778 0.93367 1.20158 0.81315 0.86951 0.94053 1.86074 1.45587 1.47179 1.57968 1.21315 0.93627 1.32592 1.10866 0.93463 1.25872 1.03532 0.93432 0.94699 1.70090 1.27537 1.40239 1.19595 0.84697 0.75991 0.74883 0.80132 1.21640 1.27391 1.17448 1.22886 0.99451 0.99792 0.78720 1.72259 1.23082 1.17417 1.12822 0.88165 0.92755 0.93115 0.86225 0.92811 0.88169 0.93107 0.70350 0.87878 0.89174 0.89673 0.89181 0.76974 0.92484 0.91392 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.17 71.98 0.66 -1.16 16 2 C 0.00 -0.07 3.39 -11.54 -0.04 -0.11 16 3 C -0.14 -1.85 9.18 71.98 0.66 -1.19 16 4 C 0.20 4.89 6.71 138.50 0.93 5.82 16 5 N -0.41 -12.08 12.15 -58.99 -0.72 -12.79 16 6 O 0.06 1.84 9.69 92.19 0.89 2.74 16 7 C 0.43 11.91 8.99 179.12 1.61 13.52 16 8 N -0.59 -14.27 5.32 -438.71 -2.34 -16.61 16 9 C 0.72 22.24 8.45 179.06 1.51 23.76 16 10 O -0.59 -23.33 15.40 16.77 0.26 -23.07 16 11 N -0.61 -17.85 3.33 -829.73 -2.76 -20.61 16 12 C 0.09 2.14 6.15 86.73 0.53 2.68 16 13 C -0.12 -3.68 5.90 31.79 0.19 -3.49 16 14 C 0.22 8.35 0.70 -10.14 -0.01 8.34 16 15 O -0.56 -21.10 8.52 -148.98 -1.27 -22.37 16 16 C -0.55 -27.25 8.89 25.60 0.23 -27.03 16 17 H 0.05 2.65 8.00 -2.91 -0.02 2.62 16 18 C 0.02 1.31 5.46 84.66 0.46 1.77 16 19 N -0.94 -54.93 13.96 21.45 0.30 -54.63 16 20 Si 1.01 45.18 24.93 68.60 1.71 46.89 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.34 -16.06 7.11 99.48 0.71 -15.36 16 23 H -0.25 -10.23 5.42 99.48 0.54 -9.69 16 24 C 0.11 4.07 6.07 86.86 0.53 4.60 16 25 N -0.51 -12.89 11.59 -311.88 -3.61 -16.50 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.45 7.38 7.80 -92.71 -0.72 6.65 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.68 6.65 -2.39 -0.02 2.67 16 37 H 0.09 2.79 8.03 -2.38 -0.02 2.77 16 38 H 0.38 13.07 8.99 -74.06 -0.67 12.41 16 39 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.07 2.52 8.02 -2.39 -0.02 2.51 16 41 H 0.07 2.63 7.99 -2.39 -0.02 2.61 16 Total: -1.00 -70.22 340.64 -0.74 -70.96 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.48 Total: 18.49 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 7.27 Total: 27.50 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -9.13 Total: -121.15 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.12 Total: -42.70 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.71 Total: 46.89 kcal Total: -70.22 -0.74 -70.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414459194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.677 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds