Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34781 * 117.00023 * 2 1 4 4 O 1.21547 * 120.00055 * 359.97438 * 3 2 1 5 5 C 1.47080 * 119.99865 * 180.02562 * 3 2 1 6 6 C 1.38197 * 126.46547 * 0.02562 * 5 3 2 7 7 N 1.34127 * 107.53313 * 179.97438 * 6 5 3 8 8 C 1.46496 * 125.66531 * 180.02562 * 7 6 5 9 9 N 1.39920 * 108.67069 * 359.75541 * 7 6 5 10 10 C 1.30911 * 108.88222 * 0.41996 * 9 7 6 11 11 N 1.39783 * 126.07722 * 179.84776 * 10 9 7 12 12 C 1.34771 * 119.99825 * 359.69525 * 11 10 9 13 13 O 1.21584 * 120.00138 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99706 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99903 * 359.97438 * 14 12 11 16 16 C 1.46499 * 119.99826 * 179.97438 * 14 12 11 17 17 H 1.09002 * 109.47391 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.46840 * 120.00322 * 16 14 12 19 19 C 1.50699 * 109.47060 * 240.00064 * 16 14 12 20 20 H 1.07999 * 120.00019 * 0.02562 * 19 16 14 21 21 C 1.37877 * 120.00129 * 180.02562 * 19 16 14 22 22 N 1.31519 * 119.99723 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99900 * 179.97438 * 21 19 16 24 24 H 1.48491 * 109.47312 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46948 * 119.99892 * 23 21 19 26 26 H 1.48500 * 109.46809 * 239.99811 * 23 21 19 27 27 H 1.09001 * 109.47005 * 300.00632 * 1 2 3 28 28 H 1.09007 * 109.47051 * 59.99446 * 1 2 3 29 29 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08005 * 126.23381 * 359.94669 * 6 5 3 31 31 H 1.08997 * 109.47161 * 90.00372 * 8 7 6 32 32 H 1.09005 * 109.46847 * 210.00483 * 8 7 6 33 33 H 1.08995 * 109.47205 * 329.99803 * 8 7 6 34 34 H 0.96997 * 119.99635 * 179.69280 * 11 10 9 35 35 H 1.08994 * 109.47057 * 269.99924 * 15 14 12 36 36 H 1.09006 * 109.46711 * 30.00085 * 15 14 12 37 37 H 1.08998 * 109.46853 * 149.99878 * 15 14 12 38 38 H 1.09004 * 109.46724 * 180.02562 * 18 16 14 39 39 H 1.09001 * 109.47194 * 299.99493 * 18 16 14 40 40 H 1.08992 * 109.47399 * 59.99666 * 18 16 14 41 41 H 0.97003 * 119.99231 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5326 1.2778 -0.0006 6 6 4.4110 0.2109 -0.0016 7 7 5.6552 0.7119 -0.0024 8 6 6.8921 -0.0732 -0.0042 9 7 5.5756 2.1088 -0.0075 10 6 4.3149 2.4614 -0.0007 11 7 3.8264 3.7711 0.0002 12 6 4.6846 4.8103 -0.0001 13 8 5.8836 4.6086 -0.0006 14 7 4.2135 6.0731 0.0003 15 6 2.7688 6.3160 0.0004 16 6 5.1463 7.2028 0.0006 17 1 6.1701 6.8287 0.0009 18 6 4.9147 8.0556 -1.2484 19 6 4.9184 8.0421 1.2313 20 1 4.1553 7.7618 1.9423 21 6 5.6840 9.1678 1.4495 22 7 6.6135 9.5088 0.5839 23 14 5.4009 10.2085 2.9748 24 1 4.3054 9.6151 3.7826 25 1 6.6458 10.2508 3.7832 26 1 5.0262 11.5874 2.5705 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1442 -0.8356 -0.0014 31 1 7.1979 -0.2670 -1.0322 32 1 7.6762 0.4831 0.5095 33 1 6.7224 -1.0196 0.5091 34 1 2.8699 3.9319 0.0010 35 1 2.4105 6.3765 -1.0272 36 1 2.2630 5.4984 0.5141 37 1 2.5581 7.2538 0.5145 38 1 5.6091 8.8959 -1.2484 39 1 5.0796 7.4486 -2.1386 40 1 3.8910 8.4297 -1.2483 41 1 7.1518 10.3010 0.7373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414525541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = -12.414599 kcal Electronic energy + Delta-G solvation = -26021.388139 eV Core-core repulsion = 22132.733916 eV Total energy + Delta-G solvation = -3888.654223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55642 -39.95395 -39.35716 -36.46658 -35.59932 -34.51246 -32.96976 -32.06771 -30.69483 -29.15831 -27.91979 -26.71287 -25.98070 -25.15188 -23.19887 -22.38026 -20.97856 -20.09565 -18.77253 -18.02317 -17.31044 -17.03131 -16.49322 -16.43454 -16.08540 -15.65107 -15.52825 -14.86786 -14.70055 -14.03110 -13.81993 -13.50087 -13.44284 -13.05119 -12.92096 -12.88689 -12.46110 -12.35777 -12.19832 -11.58795 -11.43691 -11.01714 -10.91339 -10.87818 -10.82932 -10.67063 -10.55239 -10.45234 -10.16530 -10.11023 -9.25627 -9.05338 -8.97278 -8.37390 -8.27295 -7.48155 -6.01576 -4.08814 1.23705 2.13921 2.20304 2.65743 3.12011 3.26683 3.30560 3.38353 3.42714 4.07344 4.26044 4.40587 4.49895 4.68341 4.93259 4.94801 4.98957 5.03137 5.16469 5.25714 5.29771 5.33258 5.40524 5.69243 5.82624 6.09644 6.26197 6.40297 6.68438 6.76839 6.87354 6.95469 7.09965 7.16970 7.51171 7.59298 7.76726 7.77462 7.97901 8.15873 8.28589 8.71468 8.92689 9.30307 9.57963 11.03868 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.003615 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.993209 B = 7744.197413 C = 8673.680815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.549 3.451 4 O -0.522 6.522 5 C -0.313 4.313 6 C 0.141 3.859 7 N -0.355 5.355 8 C 0.098 3.902 9 N -0.276 5.276 10 C 0.385 3.615 11 N -0.650 5.650 12 C 0.689 3.311 13 O -0.552 6.552 14 N -0.602 5.602 15 C 0.082 3.918 16 C 0.273 3.727 17 H 0.065 0.935 18 C -0.146 4.146 19 C -0.524 4.524 20 H 0.060 0.940 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.899 3.101 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.192 0.808 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.422 0.578 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.011 0.989 40 H 0.030 0.970 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 -22.405 -2.415 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.395 3.605 4 O -0.412 6.412 5 C -0.329 4.329 6 C -0.014 4.014 7 N -0.131 5.131 8 C -0.042 4.042 9 N -0.105 5.105 10 C 0.124 3.876 11 N -0.308 5.308 12 C 0.390 3.610 13 O -0.425 6.425 14 N -0.337 5.337 15 C -0.062 4.062 16 C 0.173 3.827 17 H 0.083 0.917 18 C -0.205 4.205 19 C -0.563 4.563 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.209 0.791 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.030 0.970 40 H 0.049 0.951 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.659 -21.597 -2.452 22.733 hybrid contribution -1.771 0.416 0.823 1.997 sum -8.430 -21.181 -1.629 22.855 Atomic orbital electron populations 1.23229 0.76213 1.03388 1.02714 1.86517 1.23340 1.32796 1.85025 1.19893 0.87246 0.81291 0.72080 1.90783 1.66410 1.35908 1.48095 1.18911 0.90180 0.92083 1.31719 1.23103 0.84121 0.99512 0.94688 1.48425 1.05891 1.05481 1.53289 1.22013 0.83783 0.94398 1.04043 1.78310 1.15037 0.86752 1.30435 1.18862 0.89775 0.84698 0.94227 1.42684 1.11238 1.00648 1.76194 1.16067 0.85080 0.80780 0.79051 1.90963 1.12720 1.83093 1.55682 1.47584 1.07300 1.04231 1.74590 1.21591 0.81541 1.02547 1.00560 1.18910 0.89266 0.80569 0.93996 0.91681 1.22099 1.00985 1.01574 0.95848 1.21391 1.19530 1.09033 1.06342 0.92139 1.24886 0.94860 0.97330 0.96728 1.69901 1.21451 1.25983 1.35286 0.86429 0.78114 0.79915 0.82859 1.19825 1.20954 1.20969 0.91862 0.91869 0.88273 0.79103 0.90038 0.88408 0.89017 0.73648 0.93718 0.93248 0.89547 0.88744 0.96963 0.95115 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.78 10.39 -40.71 -0.42 -4.20 16 3 C 0.55 7.48 7.95 34.32 0.27 7.75 16 4 O -0.52 -8.24 14.99 -19.30 -0.29 -8.53 16 5 C -0.31 -4.48 6.14 -104.94 -0.64 -5.12 16 6 C 0.14 1.48 11.32 -16.56 -0.19 1.29 16 7 N -0.35 -4.41 3.97 -67.59 -0.27 -4.68 16 8 C 0.10 0.70 11.43 59.84 0.68 1.39 16 9 N -0.28 -5.18 10.72 31.62 0.34 -4.84 16 10 C 0.39 7.10 7.79 -154.45 -1.20 5.90 16 11 N -0.65 -12.89 5.28 -15.30 -0.08 -12.97 16 12 C 0.69 16.34 8.25 -86.92 -0.72 15.63 16 13 O -0.55 -15.06 14.39 5.29 0.08 -14.98 16 14 N -0.60 -14.02 2.75 -181.01 -0.50 -14.52 16 15 C 0.08 1.52 9.20 59.85 0.55 2.08 16 16 C 0.27 7.31 2.64 -69.08 -0.18 7.13 16 17 H 0.07 2.01 6.90 -51.93 -0.36 1.65 16 18 C -0.15 -3.65 8.97 37.16 0.33 -3.32 16 19 C -0.52 -14.64 7.99 -34.44 -0.28 -14.91 16 20 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 21 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 22 N -0.89 -25.66 11.32 55.43 0.63 -25.04 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.42 7.58 4.68 -40.82 -0.19 7.39 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.81 6.36 -51.93 -0.33 0.48 16 37 H 0.09 1.65 7.02 -51.93 -0.36 1.29 16 38 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -37.28 349.73 -5.94 -43.22 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.28 Total: 3.88 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: -0.39 Total: 20.86 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.12 Total: -62.04 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.64 Total: -27.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.28 -5.94 -43.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414525541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.807 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds